mRNA_F-serratus_M_contig931.20705.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig931.20705.1
Unique NamemRNA_F-serratus_M_contig931.20705.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig931.20705.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 540 bits (1390), Expect = 1.910e-192
Identity = 272/314 (86.62%), Postives = 291/314 (92.68%), Query Frame = 1 
Query:    1 MAKAKKAASRPKQPKVWCNLSQVEARRLILKVGLGRDLGPGDVATVKHPNRLCETLANMLASSCMRGWTVTKFSSAGAHGHVFRAVHTDGTNAALKVQTGDAKRLRGELNAQRAFHKQGLAPKIIRYCSFKPKNRLGMVAHERLNKAVQDKTVPFQTEDESPSGNLVHVIIMEEIAGVLGQWLRREKSKQQLEKTAFEITKLMVAFKNHKLTHGDLHLNNIGYVYTDASKRYMKLMPIDFVRSDV--AFTSLEVGALMRTLAPTFRGGLHPENRGPLARYIKKFSLSSDLNYRVDSFAVMAAKFTSQMRVYMMK 936
            MAKAKKAA RPKQPKVWC+LSQ+EARRLILKV LGRD+GPGDVAT K+PNRLCETL  MLA SCMRGW VTKF SAGA+GHVFRAVHT+GT+AALKVQTGDAKRLRGEL+AQRAFHK+GLAPKIIRYCSFKPK RLGMVAHERLN+AVQDK+VPFQTEDESP+GNLVHVIIMEEIAGVLGQWLRREKS QQL KTAFEITKLMVAF+NH LTHGDLHLNNIGYVYTDASKRYM+LMPIDF RS V  AFTSLEVGALMRTLAP FRGGLHPENR PL RYIKKF+LSS+LN+RV SFAV+A KF  QMRVY+MK
Sbjct:    1 MAKAKKAAPRPKQPKVWCDLSQIEARRLILKVALGRDIGPGDVATAKNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKTRLGMVAHERLNRAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWLRREKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRSYVGKAFTSLEVGALMRTLAPNFRGGLHPENRRPLVRYIKKFALSSELNFRVGSFAVVAEKFKYQMRVYLMK 314
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BLAST of mRNA_F-serratus_M_contig931.20705.1 vs. uniprot
Match: Q8QNH4_ESV1K (EsV-1-104 n=2 Tax=root TaxID=1 RepID=Q8QNH4_ESV1K)

HSP 1 Score: 72.0 bits (175), Expect = 8.390e-11
Identity = 54/207 (26.09%), Postives = 92/207 (44.44%), Query Frame = 1 
Query:   52 CNLSQVEARRLILKVGLGRDLGPGDVATVKHPNRLCETLANMLASSCMRGWTVTKFSSAGAHGHVFRAVHTDGTNAALKVQTGDAKRLRGELNAQRAFHKQGLAPKIIRYCSFKPKNRLGMVAHERLNKAVQDKTVPFQTEDESPSGNLVHVIIMEEIAGVLGQWLRREKSKQQLEKTAFEITKLMVAFKNHKLTHGDLHLNNIGYV 672
            CN+S ++    + K+G    +    +A+VK  + +C  +   L  +C++ W    F  +GAHG  F  V+  G   A K+ + D  R   E+ AQR     G+APK+   C  K    + ++  +R+N +VQD                        + G       +   K++L     EI K + A +   ++HGDL L+N+GY+
Sbjct:   29 CNISPLQVVNTLKKMGAPSHI----IASVKTRSDMCRNITKALDLNCLKNWKFRAFLGSGAHGSTFSIVNKSGMVRAAKIVSVDPFR---EVRAQRKMASIGVAPKVYDTC--KLAKGVWVLTMDRVNGSVQDL-----------------------VGG------HKSLGKKKLRNLFQEIVKTVEAMEKANVSHGDLSLDNMGYI 197
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig931.20705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K1.910e-19286.62EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q8QNH4_ESV1K8.390e-1126.09EsV-1-104 n=2 Tax=root TaxID=1 RepID=Q8QNH4_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig931contigF-serratus_M_contig931:183964..184902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size939
Cds size939
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.4863198-CDS-F-serratus_M_contig931:183963..1849021622932686.4863198-CDS-F-serratus_M_contig931:183963..184902Fucus serratus maleCDSF-serratus_M_contig931 183964..184902 -
1690964422.3715029-CDS-F-serratus_M_contig931:183963..1849021690964422.3715029-CDS-F-serratus_M_contig931:183963..184902Fucus serratus maleCDSF-serratus_M_contig931 183964..184902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig931.20705.1prot_F-serratus_M_contig931.20705.1Fucus serratus malepolypeptideF-serratus_M_contig931 183964..184902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig931.20705.1

>prot_F-serratus_M_contig931.20705.1 ID=prot_F-serratus_M_contig931.20705.1|Name=mRNA_F-serratus_M_contig931.20705.1|organism=Fucus serratus male|type=polypeptide|length=313bp
MAKAKKAASRPKQPKVWCNLSQVEARRLILKVGLGRDLGPGDVATVKHPN
RLCETLANMLASSCMRGWTVTKFSSAGAHGHVFRAVHTDGTNAALKVQTG
DAKRLRGELNAQRAFHKQGLAPKIIRYCSFKPKNRLGMVAHERLNKAVQD
KTVPFQTEDESPSGNLVHVIIMEEIAGVLGQWLRREKSKQQLEKTAFEIT
KLMVAFKNHKLTHGDLHLNNIGYVYTDASKRYMKLMPIDFVRSDVAFTSL
EVGALMRTLAPTFRGGLHPENRGPLARYIKKFSLSSDLNYRVDSFAVMAA
KFTSQMRVYMMK*
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mRNA from alignment at F-serratus_M_contig931:183964..184902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig931.20705.1 ID=mRNA_F-serratus_M_contig931.20705.1|Name=mRNA_F-serratus_M_contig931.20705.1|organism=Fucus serratus male|type=mRNA|length=939bp|location=Sequence derived from alignment at F-serratus_M_contig931:183964..184902- (Fucus serratus male)
ATGGCGAAAGCAAAAAAAGCAGCGTCGAGGCCGAAGCAGCCGAAGGTGTG
GTGCAACTTATCGCAAGTTGAGGCCCGTCGTCTCATCCTGAAAGTCGGTC
TCGGTCGCGATCTTGGGCCTGGGGATGTGGCAACAGTGAAGCACCCCAAC
CGATTGTGCGAAACGTTAGCGAACATGCTTGCTTCTTCTTGCATGAGGGG
CTGGACAGTAACGAAGTTTTCATCGGCGGGTGCACACGGCCACGTTTTCC
GCGCGGTGCACACTGACGGTACCAATGCGGCACTCAAAGTACAGACTGGT
GATGCCAAAAGGTTGAGAGGTGAGCTCAACGCTCAGAGGGCTTTCCATAA
ACAAGGTCTCGCTCCAAAGATTATAAGGTACTGTAGTTTCAAGCCCAAGA
ATCGCCTCGGTATGGTAGCACACGAAAGACTGAACAAGGCAGTGCAAGAT
AAAACCGTACCGTTCCAAACAGAAGACGAGAGTCCCAGCGGCAACCTCGT
TCATGTGATTATCATGGAGGAGATTGCGGGCGTGCTAGGCCAGTGGTTAA
GGCGCGAAAAATCCAAGCAGCAGCTCGAAAAAACAGCGTTCGAAATCACA
AAACTTATGGTGGCTTTCAAAAACCACAAGCTGACGCACGGTGATTTGCA
CTTGAACAACATCGGGTACGTATACACGGACGCCTCCAAGAGATACATGA
AGTTGATGCCGATCGATTTCGTACGGTCGGACGTTGCGTTCACGAGCCTC
GAAGTGGGAGCGCTCATGCGCACACTCGCCCCCACCTTTCGCGGGGGATT
GCATCCTGAAAACCGTGGCCCTCTCGCCCGGTACATTAAGAAATTTTCGT
TGTCGTCAGATCTGAATTATAGAGTTGATTCGTTCGCGGTGATGGCTGCA
AAGTTCACATCTCAGATGCGAGTTTACATGATGAAGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig931:183964..184902-

>mRNA_F-serratus_M_contig931.20705.1 ID=mRNA_F-serratus_M_contig931.20705.1|Name=mRNA_F-serratus_M_contig931.20705.1|organism=Fucus serratus male|type=CDS|length=1878bp|location=Sequence derived from alignment at F-serratus_M_contig931:183964..184902- (Fucus serratus male)
ATGGCGAAAGCAAAAAAAGCAGCGTCGAGGCCGAAGCAGCCGAAGGTGTG
GTGCAACTTATCGCAAGTTGAGGCCCGTCGTCTCATCCTGAAAGTCGGTC
TCGGTCGCGATCTTGGGCCTGGGGATGTGGCAACAGTGAAGCACCCCAAC
CGATTGTGCGAAACGTTAGCGAACATGCTTGCTTCTTCTTGCATGAGGGG
CTGGACAGTAACGAAGTTTTCATCGGCGGGTGCACACGGCCACGTTTTCC
GCGCGGTGCACACTGACGGTACCAATGCGGCACTCAAAGTACAGACTGGT
GATGCCAAAAGGTTGAGAGGTGAGCTCAACGCTCAGAGGGCTTTCCATAA
ACAAGGTCTCGCTCCAAAGATTATAAGGTACTGTAGTTTCAAGCCCAAGA
ATCGCCTCGGTATGGTAGCACACGAAAGACTGAACAAGGCAGTGCAAGAT
AAAACCGTACCGTTCCAAACAGAAGACGAGAGTCCCAGCGGCAACCTCGT
TCATGTGATTATCATGGAGGAGATTGCGGGCGTGCTAGGCCAGTGGTTAA
GGCGCGAAAAATCCAAGCAGCAGCTCGAAAAAACAGCGTTCGAAATCACA
AAACTTATGGTGGCTTTCAAAAACCACAAGCTGACGCACGGTGATTTGCA
CTTGAACAACATCGGGTACGTATACACGGACGCCTCCAAGAGATACATGA
AGTTGATGCCGATCGATTTCGTACGGTCGGACGTTGCGTTCACGAGCCTC
GAAGTGGGAGCGCTCATGCGCACACTCGCCCCCACCTTTCGCGGGGGATT
GCATCCTGAAAACCGTGGCCCTCTCGCCCGGTACATTAAGAAATTTTCGT
TGTCGTCAGATCTGAATTATAGAGTTGATTCGTTCGCGGTGATGGCTGCA
AAGTTCACATCTCAGATGCGAGTTTACATGATGAAGTAAATGGCGAAAGC
AAAAAAAGCAGCGTCGAGGCCGAAGCAGCCGAAGGTGTGGTGCAACTTAT
CGCAAGTTGAGGCCCGTCGTCTCATCCTGAAAGTCGGTCTCGGTCGCGAT
CTTGGGCCTGGGGATGTGGCAACAGTGAAGCACCCCAACCGATTGTGCGA
AACGTTAGCGAACATGCTTGCTTCTTCTTGCATGAGGGGCTGGACAGTAA
CGAAGTTTTCATCGGCGGGTGCACACGGCCACGTTTTCCGCGCGGTGCAC
ACTGACGGTACCAATGCGGCACTCAAAGTACAGACTGGTGATGCCAAAAG
GTTGAGAGGTGAGCTCAACGCTCAGAGGGCTTTCCATAAACAAGGTCTCG
CTCCAAAGATTATAAGGTACTGTAGTTTCAAGCCCAAGAATCGCCTCGGT
ATGGTAGCACACGAAAGACTGAACAAGGCAGTGCAAGATAAAACCGTACC
GTTCCAAACAGAAGACGAGAGTCCCAGCGGCAACCTCGTTCATGTGATTA
TCATGGAGGAGATTGCGGGCGTGCTAGGCCAGTGGTTAAGGCGCGAAAAA
TCCAAGCAGCAGCTCGAAAAAACAGCGTTCGAAATCACAAAACTTATGGT
GGCTTTCAAAAACCACAAGCTGACGCACGGTGATTTGCACTTGAACAACA
TCGGGTACGTATACACGGACGCCTCCAAGAGATACATGAAGTTGATGCCG
ATCGATTTCGTACGGTCGGACGTTGCGTTCACGAGCCTCGAAGTGGGAGC
GCTCATGCGCACACTCGCCCCCACCTTTCGCGGGGGATTGCATCCTGAAA
ACCGTGGCCCTCTCGCCCGGTACATTAAGAAATTTTCGTTGTCGTCAGAT
CTGAATTATAGAGTTGATTCGTTCGCGGTGATGGCTGCAAAGTTCACATC
TCAGATGCGAGTTTACATGATGAAGTAA
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