mRNA_F-serratus_M_contig930.20700.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig930.20700.1
Unique Name	mRNA_F-serratus_M_contig930.20700.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.250e-48
Identity = 85/127 (66.93%), Postives = 96/127 (75.59%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV   TG+KV L+WDNCPGH I+NDDPQ  IIFLPPNVTSV+QP D GIL+ALK QYKTEMVA LA++I+ WD VR               QA +LDVTEILS+KW SFS+QTVIRCWLKA ILP
Sbjct:  232 VPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILP 358

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 6.340e-48
Identity = 85/127 (66.93%), Postives = 96/127 (75.59%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV   TG+KV L+WDNCPGH I+NDDPQ  IIFLPPNVTSV+QP D GIL+ALK QYKTEMVA LA++I+ WD VR               QA +LDVTEILS+KW SFS+QTVIRCWLKA ILP
Sbjct:  437 VPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALKCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILP 563

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.080e-47
Identity = 81/127 (63.78%), Postives = 93/127 (73.23%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV  KT +KVAL+WDNCPGH I+++DPQ  IIFLPP +TSVYQP D GIL+ LK +YKTEMVA LA++IEDWD VR               QA +LDVTEI S+KW SF  QTVI CWLKAGILP
Sbjct:   66 VPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPEITSVYQPMDMGILFVLKCRYKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILP 192

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.320e-47
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV  KT +KVAL+WDNCPGH I+++DPQ  IIFLPPNV SVYQP + GIL+ LK QYKTEMVA LA++IEDWD VR               QA +LDVTEI S+KW SF  QTVIRCWLKAGILP
Sbjct:  269 VPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLKCQYKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILP 395

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 7.380e-47
Identity = 82/127 (64.57%), Postives = 91/127 (71.65%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV   TG+KVAL+WDNCPGH I+NDDPQ  IIFLPPNV SV+QP D GIL+ALK QYKTEMV  LA +IEDWD  R               Q  +LDVTE+LS+KW SFS QTVIRCWLKA I P
Sbjct:  155 VPFVKKTTGKKVALLWDNCPGHRIKNDDPQIVIIFLPPNVMSVFQPMDMGILFALKCQYKTEMVMRLAALIEDWDTARARQIRTGCRGLNDAGQPTMLDVTEVLSQKWESFSDQTVIRCWLKATIRP 281

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5KII5_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII5_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.200e-44
Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGIL 333
            VPF+ SKT RKVAL+WDNCPGH I N+DPQ  IIFLPP VTSV+QP D G L+ LK  YKTEMV  L+ +IEDWD VR               QA +LDV E+L++KW SFS QTV+RCWLKA IL
Sbjct:  178 VPFINSKTARKVALIWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGGLFTLKCHYKTEMVVRLSGVIEDWDTVRARNIPTGCRGLSDAGQATMLDVAEVLTQKWESFSDQTVVRCWLKATIL 303

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.040e-43
Identity = 78/127 (61.42%), Postives = 90/127 (70.87%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            V FV  KT +KVAL+WDNCPGH I ++DPQ  I+FLPPNV SVYQP D GIL+ LK QY+ E +A LA++IEDWD VR               QA +LDVTEI S+KW SF  QTVIRCWLKAGILP
Sbjct:  405 VAFVKGKTSKKVALLWDNCPGHKINSNDPQIFIMFLPPNVISVYQPMDMGILFVLKCQYRNEKMARLADLIEDWDTVRARKIQRGCQGFSDAGQATVLDVTEICSQKWRSFDVQTVIRCWLKAGILP 531

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5KFG9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG9_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.300e-42
Identity = 77/127 (60.63%), Postives = 86/127 (67.72%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVR---------------QAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV SKT RKV L WDNCPGH I N+DPQ  IIFLPP VTSV+QP D G L+ LK Q K EMV  L+++IEDWD VR               QA  LDV EIL++KW SFS QTV+RCW KA ILP
Sbjct:  222 VPFVKSKTARKVTLTWDNCPGHKIINNDPQIVIIFLPPLVTSVFQPMDMGALFTLKCQNKPEMVVRLSDVIEDWDTVRARNIPRGCQGLSDAGQATTLDVAEILTQKWESFSDQTVVRCWPKATILP 348

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.580e-40
Identity = 74/112 (66.07%), Postives = 86/112 (76.79%), Query Frame = 1

Query:    1 VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVRQAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            VPFV   TG+K+AL+WDNCPGH I+NDDPQ  IIFLPPNVTSV+QP D GIL+ALK QYKT+M      ++   +   Q  +LDVTEILS+KW SFS QTVIRCWLKA ILP
Sbjct:  518 VPFVKKTTGKKMALLWDNCPGHRIKNDDPQIVIIFLPPNVTSVFQPMDMGILFALKCQYKTKM------LMRGLNDAGQPTMLDVTEILSQKWESFSDQTVIRCWLKATILP 623

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BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Match: A0A6H5K0Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y4_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.970e-38
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1

Query:   28 RKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQGILYALKGQYKTEMVANLAEIIEDWDIVRQAAILDVTEILSKKWGSFSTQTVIRCWLKAGILP 336
            R+VA +WDNCPGH I+++DP   I FLPP V SVYQP D  IL+ LK QYKTEMVA LA+++EDWD    A +LDVTEI S+KW SF  QTVIRCWLKAGILP
Sbjct:  355 RQVAFLWDNCPGHKIKSNDPHIVINFLPPYVNSVYQPMDMSILFVLKCQYKTEMVARLADLMEDWDT---ATMLDVTEICSQKWRSFDVQTVIRCWLKAGILP 454

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig930.20700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JEY2_9PHAE	1.250e-48	66.93	HTH CENPB-type domain-containing protein n=2 Tax=E...	[more]
A0A6H5JV64_9PHAE	6.340e-48	66.93	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KIE7_9PHAE	1.080e-47	63.78	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JNS8_9PHAE	2.320e-47	65.35	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JLK3_9PHAE	7.380e-47	64.57	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KII5_9PHAE	7.200e-44	61.11	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JEK6_9PHAE	1.040e-43	61.42	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KFG9_9PHAE	6.300e-42	60.63	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KA74_9PHAE	4.580e-40	66.07	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5K0Y4_9PHAE	1.970e-38	66.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig930	contig	F-serratus_M_contig930:25199..25826 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Arthropoda
Seed ortholog score	82.8
Seed ortholog evalue	1.1e-13
Seed eggNOG ortholog	6669.EFX68856
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Jerky protein homolog-like
EggNOG OGs	38HJW@33154,3BCG5@33208,3CXR0@33213,420II@6656,KOG3105@1,KOG3105@2759
COG Functional cat.	BD
Best tax level	Arthropoda
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	336
Cds size	336
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932685.564534-CDS-F-serratus_M_contig930:25198..25430	1622932685.564534-CDS-F-serratus_M_contig930:25198..25430	Fucus serratus male	CDS	F-serratus_M_contig930 25199..25430 +
1690964421.9259589-CDS-F-serratus_M_contig930:25198..25430	1690964421.9259589-CDS-F-serratus_M_contig930:25198..25430	Fucus serratus male	CDS	F-serratus_M_contig930 25199..25430 +
1622932685.583592-CDS-F-serratus_M_contig930:25722..25826	1622932685.583592-CDS-F-serratus_M_contig930:25722..25826	Fucus serratus male	CDS	F-serratus_M_contig930 25723..25826 +
1690964421.9364295-CDS-F-serratus_M_contig930:25722..25826	1690964421.9364295-CDS-F-serratus_M_contig930:25722..25826	Fucus serratus male	CDS	F-serratus_M_contig930 25723..25826 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig930.20700.1	prot_F-serratus_M_contig930.20700.1	Fucus serratus male	polypeptide	F-serratus_M_contig930 25199..25826 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig930:25199..25826+
coding sequence from alignment at F-serratus_M_contig930:25199..25826+

protein sequence of mRNA_F-serratus_M_contig930.20700.1

>prot_F-serratus_M_contig930.20700.1 ID=prot_F-serratus_M_contig930.20700.1|Name=mRNA_F-serratus_M_contig930.20700.1|organism=Fucus serratus male|type=polypeptide|length=112bp
VPFVTSKTGRKVALVWDNCPGHIIRNDDPQTTIIFLPPNVTSVYQPCDQG
ILYALKGQYKTEMVANLAEIIEDWDIVRQAAILDVTEILSKKWGSFSTQT
VIRCWLKAGILP

mRNA from alignment at F-serratus_M_contig930:25199..25826+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig930.20700.1 ID=mRNA_F-serratus_M_contig930.20700.1|Name=mRNA_F-serratus_M_contig930.20700.1|organism=Fucus serratus male|type=mRNA|length=628bp|location=Sequence derived from alignment at F-serratus_M_contig930:25199..25826+ (Fucus serratus male)
GTCCCCTTCGTCACCAGCAAGACAGGGAGGAAGGTGGCCCTTGTGTGGGA
TAACTGTCCAGGCCACATAATCCGGAACGACGATCCACAAACCACCATCA
TCTTCTTGCCTCCAAACGTCACGTCCGTCTACCAGCCCTGCGATCAGGGA
ATCTTGTATGCCCTCAAGGGCCAGTATAAGACCGAGATGGTGGCGAACCT
GGCGGAAATCATCGAGGACTGGGACATCGTCCGTGCGCGCAACATCCGCA
GATAAAATAATGACAGACTCGTGGTTGCAAGGCGCATTGTTTCCGTTGTT
TGGCAGTTTCTTGGTGTTAGGTCCTCTTGGTGTCGGATGCTCTGTTAGTG
CTTAGCTTTCCAACAGGAGTCCACATTGAAAATGCCTACCGATGCTTGTC
AATCATGTGCATTCGCCAACACTAAAAAACCTACCTCCTGCATACCGCTC
CAATTGCTCTCCTATACTGGCGCCAATTTTTGCTGTTGTTGTTGGCAGGG
GGTGCCGAGGGCTGAGCGATGCAGGCCAGGCGGCAATACTGGACGTCACT
GAGATCCTTTCCAAAAAGTGGGGAAGCTTCTCAACCCAGACTGTCATCCG
GTGCTGGCTCAAGGCCGGGATCCTTCCC

Coding sequence (CDS) from alignment at F-serratus_M_contig930:25199..25826+

>mRNA_F-serratus_M_contig930.20700.1 ID=mRNA_F-serratus_M_contig930.20700.1|Name=mRNA_F-serratus_M_contig930.20700.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig930:25199..25826+ (Fucus serratus male)
GTCCCCTTCGTCACCAGCAAGACAGGGAGGAAGGTGGCCCTTGTGTGGGA
TAACTGTCCAGGCCACATAATCCGGAACGACGATCCACAAACCACCATCA
TCTTCTTGCCTCCAAACGTCACGTCCGTCTACCAGCCCTGCGATCAGGGA
ATCTTGTATGCCCTCAAGGGCCAGTATAAGACCGAGATGGTGGCGAACCT
GGCGGAAATCATCGAGGACTGGGACATCGTCCGTCCCCTTCGTCACCAGC
AAGACAGGGAGGAAGGTGGCCCTTGTGTGGGATAACTGTCCAGGCCACAT
AATCCGGAACGACGATCCACAAACCACCATCATCTTCTTGCCTCCAAACG
TCACGTCCGTCTACCAGCCCTGCGATCAGGGAATCTTGTATGCCCTCAAG
GGCCAGTATAAGACCGAGATGGTGGCGAACCTGGCGGAAATCATCGAGGA
CTGGGACATCGTCCGCCAGGCGGCAATACTGGACGTCACTGAGATCCTTT
CCAAAAAGTGGGGAAGCTTCTCAACCCAGACTGTCATCCGGTGCTGGCTC
AAGGCCGGGATCCTTCCCGCCAGGCGGCAATACTGGACGTCACTGAGATC
CTTTCCAAAAAGTGGGGAAGCTTCTCAACCCAGACTGTCATCCGGTGCTG
GCTCAAGGCCGGGATCCTTCCC