mRNA_F-serratus_M_contig93.20698.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig93.20698.1
Unique NamemRNA_F-serratus_M_contig93.20698.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig93.20698.1 vs. uniprot
Match: UPI00138FC94C (uncharacterized protein LOC116617085 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC94C)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-8
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    4 LDGTDA-NAEVIGNNTMRIGQPSRLMAFDIKTAVQEWFFDSDPVDNNGLLIKVEDEDLLGRDLRFYSNAYSDSDYHARIHVIC 249
            LDGTDA N     + TM   +PS  + FD+  AV++W   S    N GL+++V+DE + GR LRF SNA  DS +HA IHV C
Sbjct:  147 LDGTDAENMPQSPSTTMFSYRPSGFVEFDVTRAVKDWAGGSP---NYGLVVRVKDESVDGRGLRFASNADPDSQHHAFIHVKC 226
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BLAST of mRNA_F-serratus_M_contig93.20698.1 vs. uniprot
Match: A0A451CPM4_9GAMM (Disaggregatase related repeat-containing protein n=1 Tax=Candidatus Kentron sp. G TaxID=2126341 RepID=A0A451CPM4_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 5.680e-6
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:    4 LDGTDANAEVIGNNTM-RIGQPSRLMAFDIKTAVQEWFFDSDPVDNNGLLIKVEDEDLLGRDLRFYSNAYSDSDYHARIHVIC 249
            LD  DA A   G  T     +PS  M FD+  AV+ W   ++   N GLL+   +E  +GRD+RFYS  YSD+D H  + V+C
Sbjct:  100 LDNIDAEATPQGIPTYYHSHRPSGYMEFDVTPAVKNW---AEGERNYGLLVWAMNEYEVGRDIRFYSREYSDTDKHPVLKVLC 179
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BLAST of mRNA_F-serratus_M_contig93.20698.1 vs. uniprot
Match: UPI00138FC51C (uncharacterized protein LOC116617081 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC51C)

HSP 1 Score: 55.8 bits (133), Expect = 2.610e-5
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    4 LDGTDANAEVIG-NNTMRIGQPSRLMAFDIKTAVQEWFFDSDPVDNNGLLIKVEDEDLLGRDLRFYSNAYSDSDYHARIHVIC 249
            L+  DA A     + TM   +PS  + FD+  AV++W   S    N G++++V++E + GR LRF SNA  DS  HA IHV C
Sbjct:  145 LNNIDAEARPQSPSTTMFSFRPSGFVEFDVTRAVRDWARGSP---NYGVVVRVQNESVEGRGLRFASNADRDSKRHAYIHVKC 224
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig93.20698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00138FC94C1.080e-846.99uncharacterized protein LOC116617085 n=1 Tax=Nemat... [more]
A0A451CPM4_9GAMM5.680e-640.96Disaggregatase related repeat-containing protein n... [more]
UPI00138FC51C2.610e-540.96uncharacterized protein LOC116617081 n=1 Tax=Nemat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig93contigF-serratus_M_contig93:843721..845511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1233
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig93.20698.1prot_F-serratus_M_contig93.20698.1Fucus serratus malepolypeptideF-serratus_M_contig93 844699..845463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932685.1931605-UTR-F-serratus_M_contig93:843720..8446981622932685.1931605-UTR-F-serratus_M_contig93:843720..844698Fucus serratus maleUTRF-serratus_M_contig93 843721..844698 -
1690964421.8269312-UTR-F-serratus_M_contig93:843720..8446981690964421.8269312-UTR-F-serratus_M_contig93:843720..844698Fucus serratus maleUTRF-serratus_M_contig93 843721..844698 -
1622932685.414955-UTR-F-serratus_M_contig93:845463..8455111622932685.414955-UTR-F-serratus_M_contig93:845463..845511Fucus serratus maleUTRF-serratus_M_contig93 845464..845511 -
1690964421.8643847-UTR-F-serratus_M_contig93:845463..8455111690964421.8643847-UTR-F-serratus_M_contig93:845463..845511Fucus serratus maleUTRF-serratus_M_contig93 845464..845511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932685.3480525-CDS-F-serratus_M_contig93:844698..8448661622932685.3480525-CDS-F-serratus_M_contig93:844698..844866Fucus serratus maleCDSF-serratus_M_contig93 844699..844866 -
1690964421.8383958-CDS-F-serratus_M_contig93:844698..8448661690964421.8383958-CDS-F-serratus_M_contig93:844698..844866Fucus serratus maleCDSF-serratus_M_contig93 844699..844866 -
1622932685.3972628-CDS-F-serratus_M_contig93:845424..8454631622932685.3972628-CDS-F-serratus_M_contig93:845424..845463Fucus serratus maleCDSF-serratus_M_contig93 845425..845463 -
1690964421.8493454-CDS-F-serratus_M_contig93:845424..8454631690964421.8493454-CDS-F-serratus_M_contig93:845424..845463Fucus serratus maleCDSF-serratus_M_contig93 845425..845463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig93.20698.1

>prot_F-serratus_M_contig93.20698.1 ID=prot_F-serratus_M_contig93.20698.1|Name=mRNA_F-serratus_M_contig93.20698.1|organism=Fucus serratus male|type=polypeptide|length=69bp
MRIGQPSRLMAFDIKTAVQEWFFDSDPVDNNGLLIKVEDEDLLGRDLRFY
SNAYSDSDYHARIHVICT*
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mRNA from alignment at F-serratus_M_contig93:843721..845511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig93.20698.1 ID=mRNA_F-serratus_M_contig93.20698.1|Name=mRNA_F-serratus_M_contig93.20698.1|organism=Fucus serratus male|type=mRNA|length=1791bp|location=Sequence derived from alignment at F-serratus_M_contig93:843721..845511- (Fucus serratus male)
GCTCTCGACGGCACCGACGCGAATGCCGAAGTCATCGGCAATAACACTAT
GCGCATTGGACAACCTTCTCGCCTTATGGCTTTCGATGTAAGTACAATGC
ATAATCTTGCCGTATTTTATTGGTCGCTTCGAACAGACGCGGTGGGCTCA
GAGACAACCGATCCAGCATTTTTCTCTTCGCCCGCTCAACCAGTAGTGCA
CCTCTTCCATTCTGTGCGAGTTACCCGCGGATCTCAGGGTGTGATAACCC
GTGGCGAATAATGCCCGTGGCTCTTATTTTTGGTAGTCACATATGACCCC
GTCAACCCTTCACCCGACATTTTACTAGCGCTGTGACCAAATCGGGCCGG
AGCAGCATAGCGCACATGCGGTTAAGAAAAATCAGGGACGGATGACACAA
TATCGCCCGCCTCCACTCCGAGGTTGCTATTGTTGAACCGAGTTGTTCTC
GAACAGGAAAAATGTTTTAAAGTACTCGTACCACCATTCAGTCGCAAAAG
GCTATGAAAATATGACGGCTCTGCTCTACCGCGGGAAACAAATGTGCAAA
TTCATATCATAGACATGTAGAGCTTTAAGACCGAAAAACATTACATCCCT
TCCGCACAAATATTTGTCGTCTGATGACTGACGTTGAACGTCTAGATAAA
GACGGCCGTGCAAGAATGGTTCTTCGACAGCGATCCTGTGGATAACAACG
GACTACTGATCAAAGTCGAGGATGAGGACCTCCTCGGCCGTGACCTTCGC
TTCTACTCAAACGCCTACTCGGACTCGGATTATCACGCCCGCATTCATGT
TATCTGCACGTAGGGCCCAGGCCCTACCCGAGGGCCAGCCGCAAGCCCGG
TTCAGACCTCGCCTGGGGACCAGACCATGATCCGTACTGTCCTGTGACCG
AAGCTGGCTCATTCAAAGCATATTGTTAACGGCCATTCCATGAGAGTATT
CGTGAAAAGAAGCTATCTTGGTGCACGTGAAAGTAGTGGTTGCCCTGAGA
TTAGGAGAACAGAGTGACGACGGAGAAGAGTTTGAGATAGACGATGTAGA
CCAGAATGTTGTCGTGCTTCCGTCCAACAACTTGTGTGCAGAAGTACTGT
AGAGCCGGTAACGTTCAGTGCATTCTGTTGTGATCGGGTGGTTTGTGTTG
CACCAGGGAAAAATATGACTATGAGAGGGAAAACAATAATTCTACCCGCG
CTAGCTCTATACAACGACGTGTAATCCAAAGCCGCGTCGGATAGAGCTCT
ATGTCTTTTTGTCTGTTTGCGGGCTTCAGTTTGTTTGATTTGCCTTCTTC
GTAGTTCCATGGGATGGTTTCCACCTTTACTTTGAGGTTACGTTCTCCTA
AACAAGCATATAATAGGCGCAACCCAGGAATGAACACACACGCCGATATG
TCCCCTTTCGTATTGTCTTGGCGTGGGAGAGGGGTTGGGTAAAAAACGCA
GGATTGATCAGGTCTAGTTTTGATTTGGATTGGGGGAAGAGGGGAGGAGG
CCTAGTCTTTTTTTGTTTTAAATGCGGGACGCTAACTCTAGATCCTGCGA
TCCAGTCTCGTCCTTTCACATGTAACTCTTATGTTGTTGTTAGAGGTTAA
AAGCGATGGTACTCTCCTTCCGGCACGAACATAGATACTCAAAATGATAT
AAGATTATGTTGCAACCGGTTTGCTCGTCCATAGCCTGCCGTTTTTTGTT
TTTTTTCACGCGCTCCTGTCTGTCTCTCGTTGTGAGCTTGCAAACGAAAG
TATTAATAGTTACGTCATCACCTGGAGAGTTGCGGCGCTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig93:843721..845511-

>mRNA_F-serratus_M_contig93.20698.1 ID=mRNA_F-serratus_M_contig93.20698.1|Name=mRNA_F-serratus_M_contig93.20698.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig93:843721..845511- (Fucus serratus male)
ATGCGCATTGGACAACCTTCTCGCCTTATGGCTTTCGATATGCGCATTGG
ACAACCTTCTCGCCTTATGGCTTTCGATATAAAGACGGCCGTGCAAGAAT
GGTTCTTCGACAGCGATCCTGTGGATAACAACGGACTACTGATCAAAGTC
GAGGATGAGGACCTCCTCGGCCGTGACCTTCGCTTCTACTCAAACGCCTA
CTCGGACTCGGATTATCACGCCCGCATTCATGTTATCTGCACGTAGATAA
AGACGGCCGTGCAAGAATGGTTCTTCGACAGCGATCCTGTGGATAACAAC
GGACTACTGATCAAAGTCGAGGATGAGGACCTCCTCGGCCGTGACCTTCG
CTTCTACTCAAACGCCTACTCGGACTCGGATTATCACGCCCGCATTCATG
TTATCTGCACGTAG
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