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Homology
BLAST of mRNA_F-serratus_M_contig93.20688.1 vs. uniprot
Match: D8LMZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ3_ECTSI) HSP 1 Score: 313 bits (802), Expect = 5.430e-99 Identity = 173/267 (64.79%), Postives = 222/267 (83.15%), Query Frame = 2
Query: 245 QQKGRLSSSAAPNVKGADRGEGEEGKKNGRKNVRSEEEQRKVAEHKAGMLEYKRQMTILRKEVHQETKEKKHAEAVSAALERRQIAKKKAAAAAVKREKAAINVALNLEKEAQQKTKYESGFQEAARIFHEREERKKNIHSILLEELEMESKYWIVSPEDVTAKITDDLWDTPGNNSAERQIALPDEHLWRFAADIGLYDQEEEPSERNTYLRTKMFSRMEEMQNANTYLRDRRRRWDNDTRGLLKDADRLLRKRRPAPPGYMTRLE 1045
QQ LSS+A+ K AD EGE G K R+EE+ +KVAEHKA +EY+ +MT LRKEV +E K+K+ A+AV+AALERR+IAK++AAA A ++ KAAI++ALN E++ Q K YE+G++E+AR+F EREERKKNIH+ILLEELE ES++WI +PEDVTAKITDDLW+ PGNN+A+ QI++PDEHLWRF+AD+GLY+QEE+PSER+ YLR++M+SRM+EM A TY R+RR RWDNDTRGLLK+ADRLLRK+RP PPGYM+RLE
Sbjct: 60 QQACGLSSNASQ--KPADGAEGE-----GSKARRTEEQAKKVAEHKAAEMEYRLRMTALRKEVQREVKDKREADAVTAALERRRIAKRQAAARAERKRKAAISIALNEERKQQLKENYEAGYRESARVFFEREERKKNIHAILLEELEAESEHWINTPEDVTAKITDDLWEAPGNNTAKGQISMPDEHLWRFSADVGLYNQEEDPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSRLE 319
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-16_001170.1 |
Exons | 7 |
Model size | 1743 |
Cds size | 1071 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932682.7687478-UTR-F-serratus_M_contig93:548598..548689 | 1622932682.7687478-UTR-F-serratus_M_contig93:548598..548689 | Fucus serratus male | UTR | F-serratus_M_contig93 548599..548689 + |
1690964420.5040848-UTR-F-serratus_M_contig93:548598..548689 | 1690964420.5040848-UTR-F-serratus_M_contig93:548598..548689 | Fucus serratus male | UTR | F-serratus_M_contig93 548599..548689 + |
1622932682.9138021-UTR-F-serratus_M_contig93:552849..553337 | 1622932682.9138021-UTR-F-serratus_M_contig93:552849..553337 | Fucus serratus male | UTR | F-serratus_M_contig93 552850..553337 + |
1690964420.603337-UTR-F-serratus_M_contig93:552849..553337 | 1690964420.603337-UTR-F-serratus_M_contig93:552849..553337 | Fucus serratus male | UTR | F-serratus_M_contig93 552850..553337 + |
1622932682.932006-UTR-F-serratus_M_contig93:553352..553445 | 1622932682.932006-UTR-F-serratus_M_contig93:553352..553445 | Fucus serratus male | UTR | F-serratus_M_contig93 553353..553445 + |
1690964420.6125271-UTR-F-serratus_M_contig93:553352..553445 | 1690964420.6125271-UTR-F-serratus_M_contig93:553352..553445 | Fucus serratus male | UTR | F-serratus_M_contig93 553353..553445 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932682.781211-CDS-F-serratus_M_contig93:548689..548848 | 1622932682.781211-CDS-F-serratus_M_contig93:548689..548848 | Fucus serratus male | CDS | F-serratus_M_contig93 548690..548848 + |
1690964420.527736-CDS-F-serratus_M_contig93:548689..548848 | 1690964420.527736-CDS-F-serratus_M_contig93:548689..548848 | Fucus serratus male | CDS | F-serratus_M_contig93 548690..548848 + |
1622932682.7937164-CDS-F-serratus_M_contig93:549731..549923 | 1622932682.7937164-CDS-F-serratus_M_contig93:549731..549923 | Fucus serratus male | CDS | F-serratus_M_contig93 549732..549923 + |
1690964420.5419133-CDS-F-serratus_M_contig93:549731..549923 | 1690964420.5419133-CDS-F-serratus_M_contig93:549731..549923 | Fucus serratus male | CDS | F-serratus_M_contig93 549732..549923 + |
1622932682.8174582-CDS-F-serratus_M_contig93:551044..551191 | 1622932682.8174582-CDS-F-serratus_M_contig93:551044..551191 | Fucus serratus male | CDS | F-serratus_M_contig93 551045..551191 + |
1690964420.5515115-CDS-F-serratus_M_contig93:551044..551191 | 1690964420.5515115-CDS-F-serratus_M_contig93:551044..551191 | Fucus serratus male | CDS | F-serratus_M_contig93 551045..551191 + |
1622932682.8590302-CDS-F-serratus_M_contig93:551559..551622 | 1622932682.8590302-CDS-F-serratus_M_contig93:551559..551622 | Fucus serratus male | CDS | F-serratus_M_contig93 551560..551622 + |
1690964420.5705252-CDS-F-serratus_M_contig93:551559..551622 | 1690964420.5705252-CDS-F-serratus_M_contig93:551559..551622 | Fucus serratus male | CDS | F-serratus_M_contig93 551560..551622 + |
1622932682.8835657-CDS-F-serratus_M_contig93:551957..552161 | 1622932682.8835657-CDS-F-serratus_M_contig93:551957..552161 | Fucus serratus male | CDS | F-serratus_M_contig93 551958..552161 + |
1690964420.5814219-CDS-F-serratus_M_contig93:551957..552161 | 1690964420.5814219-CDS-F-serratus_M_contig93:551957..552161 | Fucus serratus male | CDS | F-serratus_M_contig93 551958..552161 + |
1622932682.898942-CDS-F-serratus_M_contig93:552543..552849 | 1622932682.898942-CDS-F-serratus_M_contig93:552543..552849 | Fucus serratus male | CDS | F-serratus_M_contig93 552544..552849 + |
1690964420.5918083-CDS-F-serratus_M_contig93:552543..552849 | 1690964420.5918083-CDS-F-serratus_M_contig93:552543..552849 | Fucus serratus male | CDS | F-serratus_M_contig93 552544..552849 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig93.20688.1 >prot_F-serratus_M_contig93.20688.1 ID=prot_F-serratus_M_contig93.20688.1|Name=mRNA_F-serratus_M_contig93.20688.1|organism=Fucus serratus male|type=polypeptide|length=357bp
MYRRVSSGKNAIVAMNRASGVWNEILTGAASSGQIMAGVAPGRSLMLSEL FQQKGRLSSSAAPNVKGADRGEGEEGKKNGRKNVRSEEEQRKVAEHKAGM LEYKRQMTILRKEVHQETKEKKHAEAVSAALERRQIAKKKAAAAAVKREK AAINVALNLEKEAQQKTKYESGFQEAARIFHEREERKKNIHSILLEELEM ESKYWIVSPEDVTAKITDDLWDTPGNNSAERQIALPDEHLWRFAADIGLY DQEEEPSERNTYLRTKMFSRMEEMQNANTYLRDRRRRWDNDTRGLLKDAD RLLRKRRPAPPGYMTRLEHDQLAQERQLLEEERRETELARNNEMRDARDA GGEQKA* back to topmRNA from alignment at F-serratus_M_contig93:548599..553445+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig93.20688.1 ID=mRNA_F-serratus_M_contig93.20688.1|Name=mRNA_F-serratus_M_contig93.20688.1|organism=Fucus serratus male|type=mRNA|length=4847bp|location=Sequence derived from alignment at F-serratus_M_contig93:548599..553445+ (Fucus serratus male) CACCCCTGGGTCCGAGGTATCATAAGCTCGTCTCTGTTGCTGCACGCTAG
CCGTGCGTCACCAACCAGTTTCTTTTACTGTTGAGGCAGTTATGTATCGC
CGCGTGTCATCCGGAAAGAATGCAATCGTCGCTATGAATAGAGCATCTGG
GGTTTGGAATGAGATACTCACAGGCGCGGCCTCTTCAGGTCAAATCATGG
CTGGAGTTGCCCCGGGCCGCTCGTTGATGCTTTCGGAACTGTTTCAGCAG
GTGATGACGCTCTCCCTTCGTGGGAGGCAAGGTATTGTTCAATAAAACTC
ATGTCTGTTGTTTGAATACTTATGTTGCGTGAATGACCTGTTTGTTATAC
TTAGAGTATGGCCTCCCCTTGCCTCGAAGTATACTGCTGTGTGTACCAGG
TGCTGTACCAGTATAATGTGTAGGATTCCTGCATAGAGCTACAGCAGCAG
CAATAAAGCTATTAATAGAGCCTATGTCCACAGCCCGGACATCAGTTGCG
AACGGTGCAGTTCGTGGTGGTGGCCGCGCTTTCCAAATTGTAAATTTGAA
AAGCGCCAACGTCGCCGAATAGAGCTATTATACGAGAATATATCCTTGAG
GGTTGGCGCATAGTCTAGTCTAATAGAGGTTATGATACTGTTGTACCGCC
CGAAGAGCAGTGCACCAATGTGTGTGTGTGTGTTGCCATCCCATTTATTA
TGGACTTGAGGTTTGTGGAAGTGCCAGCCGGGGTCACACAGGAGAAAGGT
CTCACAGGATTTTCTCCACCTTCTTTCTGCGGTGCTTGGCTTACGTTTTC
TCGCCAGAAGGATTTAGCCGTTCCTTTCCCTCGTCGACCCTGAAGTCGAA
TTTTGTTTACTCACGAATTAATCATTCTCCACTTGTTGGGCATTTTTATT
TTATTTTTCCCGTGAGGAAAAATCCCGGTTCGTGTGATTGCATCGAGATT
CGAACACACATCCCAACGTCAAAAGGCTTCGAGGTTACCAACTAAACCAC
CGGGGCGACCGAAACGCCAGACCTTATGACGCCAAACTATAGACTATGTG
GCTTTGCACGTAGCAGTGCATATGATACACTACCTGGTACGTCCTGAAGA
CGAATATTCATGCCTGTCGCGACTGCCGAGCAGAAAGGCCGCTTGTCAAG
CTCGGCCGCGCCTAACGTAAAGGGTGCCGATAGAGGGGAGGGAGAAGAGG
GCAAGAAAAATGGGCGCAAGAACGTGCGGTCGGAAGAGGAGCAGAGGAAG
GTGGCGGAGCACAAAGCAGGGATGCTGGAGTATAAAAGACAGATGACGAT
CCTCAGGAAGGAGGTTCACCAAGAGGTGTGTAGTAGTCGCACCCGTACAG
TAAGGAGCTTTGGCTCGAAAAATTTGGGCTTATGCTATACAGTACCTGTT
ATTCAATATGTTACCAGGTATATTTAATCAAGCGCCTCACGTGCCGCCAA
GTTGTCTGTTGCGAAGCGAAGGGCCGTCCGTCCGTCTATCCGTCTATCCG
TCCGTCTACCTGCGAGGCGTGAAAGGCTGCACCCGTAACCGTAAAACAAG
CCATAACTTTGCGCTGTACCATCGCGATCTTTTCCTCCAATATATTTTGG
TCTCCCAAAGCTCTAGCTCGATGGTCATTATTAATAGTAATATTAGTAGG
ATGATGAGTCGTGGTGGGGTGGAGTTTCGGGCAGTACGGGGGGGGGTTGT
TTGTGTCTCACTTAAGGCCCATGGGCTTCAACGTGCTATTCATGGGTTAC
CGATCTCGCTCACGTACTACCTTACCTGTCATCTTGCCTGTGGCCACTAA
GGATCTTCGCATCCTCCCCGGTTCTTGCCTGTGGCCGCTAAGGTTTTTTT
GTCGCGATGCAACTTCGGCCACTTCTTGCACCTCATCAATCAGTGACTCA
ATTTTAGTTACTCACGTTCTCAAGTTTTCTGCTACAGAAACTAGAATAAA
GGATATCGTCCTGTAAGATTCGAACTCGCGACATCCGAACAAAGATAGCG
AAAACTGCGAGGTTATCTACTTCACCCGTGCATACAGTACTCGCTTCGCG
GTATGATTCTATCAATGTAATAGTTTGTTACGGAACTACTCTCCGTTCGA
CAAACCGTTTTCGCCGTCGCGCCAAAACAAAGATTCCGCTAACGAGGTAA
CGCACCTACGTAGGAGCCAGGTCCACTTCTCTCGACAAGGTCGGTTTGGC
GCACGAGGCTCCTCGATAGCAGTATCTTACTTGATCCACACCGGATCCAC
ACCTCCCTACAAAAAGAAGAGAAGATGTCGTTCAGAATCAAAAATTCGTC
TCGTCCTTTTCTCTTCAGCACATTATCCTAAAACTCGATGCCCTTTACGA
AATATAAAATGTTTCCACCAATCAAAGTGAGTCGGGGGGGTGCTGCGGCG
AATGAGCGGATCGCCAATCTTTCACCCACATTCAAAATTGCGACAGACCA
AGGAGAAGAAACACGCCGAGGCCGTCAGCGCCGCACTAGAACGGCGTCAA
ATCGCCAAGAAAAAAGCTGCCGCCGCGGCCGTCAAGCGCGAGAAGGCCGC
CATCAACGTAGCATTGAACCTCGAGAAAGAGGCCCAACAAAAGGTGCCCC
TTCAGCAGGTCTTAGGTACTCGAGCAATCTTTAGTGCGCTCTTTGGCGGT
GTCAGACCGCGCAGCAGTACAAGTACCTTCGTTTGAGATGCGTCGCTCCT
TTCGCAGCAGCAGAAGCGCTAGTGGGAGGCGGCCGGATCCCAATCTTGGA
CAAAGCCTCGTGGATTGTACCTTGACCTATACCTTTATCAGATTGCAGGC
GCAACCGCCTTGTCCGCGGGAACCGTCTTGAGAGTTGTCTCAAGGGTTTT
GTTGTGATCATTTTGCAGCGTTATAGCTTTGTAACGCTTTCAGGTAGGCT
TAGTTGAATAGTTGATATTTTCCCTCCCATCTCGCGCGCCCCCAACGATG
CCGACCTTCAGACCAAGTATGAATCTGGATTTCAGGAGGCTGCTCGTATC
TTCCACGAGAGAGAAGAGCGGAAGGTGTGCGATAGGCCGGCAGTAGTTAC
TCCTTCAGCAAGATTTGGAATACTCAAACGGATCTTGGGAGTGACTGCGG
GCGGATGCTCGCCCTCCGCCCAGCGGCTCCCGTCTCGCCTGTGTACAGCG
AGTGTTAAAACACTGTAATAGAAATGTGCTGTGCTAGATCCTCGATTGAG
GCTTAACGCCTCCGCGAACTCGATAATGGAAAACCCTTTGCTTGCTCGCA
GTAGGAAGCACGGATGGTGCCGATGCTCTTTTATCTATGTCACTTTAAAG
TGTTCGCCTTCTTTCGTTTCTTTTGGGAAATATTTTATTTTGGTGTTCAC
GCGTTACAGAAAAATATTCATAGCATTCTGCTCGAAGAGCTCGAAATGGA
GAGCAAGTACTGGATCGTGTCTCCCGAAGACGTGACGGCCAAGATCACGG
ATGACCTTTGGGACACGCCGGGAAATAACTCCGCCGAGAGGCAAATCGCC
TTACCCGACGAGCACTTGTGGAGGTTCGCGGCTGACATCGGGTTGTATGA
TCAAGAGGAAGAGGTGAGGCGTTACGGTGCCGGGAGTGCAGGGGGGGGGC
AGGATACACTTGAACAACGTCCTTCACCGGCCCGCCCACCTGGGTCGTTA
TTCTGGCATTCGAGCTAAAAGAAATGCTGTTCAGAGTAGCTCGTGTGAGC
CTCAATATGAACGCTCCCTCACCGAAACGATGCACGGGGTTCTGTGATTC
GAAATATTTCTGCAATTTATTCTTCGCAGACTCGATGTGCAAAGGTACGG
TTGTAGGAAGCCTCCGCCTTCATTTCGATTCCCATTCCCCGGAAGGCAAT
CGCGACTTTCCCAACAAGAACACCTCGCCTACGTGGATCCATATCTAATC
TTCCGCTCACCCGCGACCTCATCTCGACTCGCCGACACCACGCAGCCTTC
CGAGCGGAACACCTACCTCCGCACGAAGATGTTCTCCCGCATGGAGGAAA
TGCAGAACGCCAACACGTACCTGAGAGATCGTCGCAGGCGCTGGGACAAC
GACACACGGGGCCTCCTTAAGGATGCGGATCGCTTGTTGCGCAAGCGGCG
GCCCGCTCCCCCAGGGTACATGACGCGACTCGAACATGATCAGTTAGCGC
AGGAGCGGCAGCTGCTGGAAGAGGAGCGGAGGGAGACGGAGCTCGCGAGG
AACAACGAGATGCGGGATGCGCGGGATGCGGGTGGAGAGCAGAAAGCGTG
ATAGTTATTTTATGTTCGAGTTTAAACTTCTGCCACCATTTTCGTTAAGT
TGTTTGCTTTTAACGAAATTATAAAGTTTGCCAGACGGATGTCATCCACC
ATCTGTTGCTGGGGGTTTCGGTGGTGAGCTCGGGCGGTCGTGAAAAAGCG
CAATTTGATCTGGGGTTGAAACGGGTCGATGGAGCCGCGTGCCTGAGGAC
CCTGCCGTCATATTCCAGCTGATTTCCCTAGTGTTTGTTGTTGGGTCATC
ATTTATCATTTGAGGAGACTGGGCATCAACCGGGCATGGTGCATGTCAAT
TCTACTCGTGGTCAGCTCAACACGAAAAATATTTTTCCTGGCCCCATACG
CGCCAAAGACTTTGATCTCTTGAGACGAGTTTGACCGTCCCGTCCGGCGT
TAGCCTGTTCATTCTCCACACCCAGGCTGAATCTAGTACTTACTCGCGGG
TTCTTTCTCCTCCCTCCCGCTTTCCGCGATAGATAACAGTGCAGTGTACA
TCTATGTACATCTATGCTGTCAAGCGCCATCGGGTCCGTCCCGAGTTTAT
CGGGTCACGCATTTGCGCATCCAATAATCCCCACGGTAGCTCGAGTA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig93:548599..553445+ >mRNA_F-serratus_M_contig93.20688.1 ID=mRNA_F-serratus_M_contig93.20688.1|Name=mRNA_F-serratus_M_contig93.20688.1|organism=Fucus serratus male|type=CDS|length=2142bp|location=Sequence derived from alignment at F-serratus_M_contig93:548599..553445+ (Fucus serratus male) ATGTATCGCCGCGTGTCATCCGGAAAGAATGCAATCGTCGCTATGAATAG AGCATCTGGGGTTTGGAATGAGATACTCACAGGCGCGGCCTCTTCAGGTC AAATCATGGCTGGAGTTGCCCCGGGCCGCTCGTTGATGCTTTCGGAACTG TTTCAGCAGATGTATCGCCGCGTGTCATCCGGAAAGAATGCAATCGTCGC TATGAATAGAGCATCTGGGGTTTGGAATGAGATACTCACAGGCGCGGCCT CTTCAGGTCAAATCATGGCTGGAGTTGCCCCGGGCCGCTCGTTGATGCTT TCGGAACTGTTTCAGCAGAAAGGCCGCTTGTCAAGCTCGGCCGCGCCTAA CGTAAAGGGTGCCGATAGAGGGGAGGGAGAAGAGGGCAAGAAAAATGGGC GCAAGAACGTGCGGTCGGAAGAGGAGCAGAGGAAGGTGGCGGAGCACAAA GCAGGGATGCTGGAGTATAAAAGACAGATGACGATCCTCAGGAAGGAGGT TCACCAAGAGAAAGGCCGCTTGTCAAGCTCGGCCGCGCCTAACGTAAAGG GTGCCGATAGAGGGGAGGGAGAAGAGGGCAAGAAAAATGGGCGCAAGAAC GTGCGGTCGGAAGAGGAGCAGAGGAAGGTGGCGGAGCACAAAGCAGGGAT GCTGGAGTATAAAAGACAGATGACGATCCTCAGGAAGGAGGTTCACCAAG AGACCAAGGAGAAGAAACACGCCGAGGCCGTCAGCGCCGCACTAGAACGG CGTCAAATCGCCAAGAAAAAAGCTGCCGCCGCGGCCGTCAAGCGCGAGAA GGCCGCCATCAACGTAGCATTGAACCTCGAGAAAGAGGCCCAACAAAAGA CCAAGGAGAAGAAACACGCCGAGGCCGTCAGCGCCGCACTAGAACGGCGT CAAATCGCCAAGAAAAAAGCTGCCGCCGCGGCCGTCAAGCGCGAGAAGGC CGCCATCAACGTAGCATTGAACCTCGAGAAAGAGGCCCAACAAAAGACCA AGTATGAATCTGGATTTCAGGAGGCTGCTCGTATCTTCCACGAGAGAGAA GAGCGGAAGACCAAGTATGAATCTGGATTTCAGGAGGCTGCTCGTATCTT CCACGAGAGAGAAGAGCGGAAGAAAAATATTCATAGCATTCTGCTCGAAG AGCTCGAAATGGAGAGCAAGTACTGGATCGTGTCTCCCGAAGACGTGACG GCCAAGATCACGGATGACCTTTGGGACACGCCGGGAAATAACTCCGCCGA GAGGCAAATCGCCTTACCCGACGAGCACTTGTGGAGGTTCGCGGCTGACA TCGGGTTGTATGATCAAGAGGAAGAGAAAAATATTCATAGCATTCTGCTC GAAGAGCTCGAAATGGAGAGCAAGTACTGGATCGTGTCTCCCGAAGACGT GACGGCCAAGATCACGGATGACCTTTGGGACACGCCGGGAAATAACTCCG CCGAGAGGCAAATCGCCTTACCCGACGAGCACTTGTGGAGGTTCGCGGCT GACATCGGGTTGTATGATCAAGAGGAAGAGCCTTCCGAGCGGAACACCTA CCTCCGCACGAAGATGTTCTCCCGCATGGAGGAAATGCAGAACGCCAACA CGTACCTGAGAGATCGTCGCAGGCGCTGGGACAACGACACACGGGGCCTC CTTAAGGATGCGGATCGCTTGTTGCGCAAGCGGCGGCCCGCTCCCCCAGG GTACATGACGCGACTCGAACATGATCAGTTAGCGCAGGAGCGGCAGCTGC TGGAAGAGGAGCGGAGGGAGACGGAGCTCGCGAGGAACAACGAGATGCGG GATGCGCGGGATGCGGGTGGAGAGCAGAAAGCGTGACCTTCCGAGCGGAA CACCTACCTCCGCACGAAGATGTTCTCCCGCATGGAGGAAATGCAGAACG CCAACACGTACCTGAGAGATCGTCGCAGGCGCTGGGACAACGACACACGG GGCCTCCTTAAGGATGCGGATCGCTTGTTGCGCAAGCGGCGGCCCGCTCC CCCAGGGTACATGACGCGACTCGAACATGATCAGTTAGCGCAGGAGCGGC AGCTGCTGGAAGAGGAGCGGAGGGAGACGGAGCTCGCGAGGAACAACGAG ATGCGGGATGCGCGGGATGCGGGTGGAGAGCAGAAAGCGTGA back to top
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