mRNA_F-serratus_M_contig93.20681.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig93.20681.1
Unique NamemRNA_F-serratus_M_contig93.20681.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig93.20681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig93contigF-serratus_M_contig93:358698..360048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size495
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932680.3631568-CDS-F-serratus_M_contig93:358697..3588891622932680.3631568-CDS-F-serratus_M_contig93:358697..358889Fucus serratus maleCDSF-serratus_M_contig93 358698..358889 -
1690964419.206626-CDS-F-serratus_M_contig93:358697..3588891690964419.206626-CDS-F-serratus_M_contig93:358697..358889Fucus serratus maleCDSF-serratus_M_contig93 358698..358889 -
1622932680.3779418-CDS-F-serratus_M_contig93:359745..3600481622932680.3779418-CDS-F-serratus_M_contig93:359745..360048Fucus serratus maleCDSF-serratus_M_contig93 359746..360048 -
1690964419.2208338-CDS-F-serratus_M_contig93:359745..3600481690964419.2208338-CDS-F-serratus_M_contig93:359745..360048Fucus serratus maleCDSF-serratus_M_contig93 359746..360048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig93.20681.1prot_F-serratus_M_contig93.20681.1Fucus serratus malepolypeptideF-serratus_M_contig93 358698..360048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig93.20681.1

>prot_F-serratus_M_contig93.20681.1 ID=prot_F-serratus_M_contig93.20681.1|Name=mRNA_F-serratus_M_contig93.20681.1|organism=Fucus serratus male|type=polypeptide|length=165bp
MIEVMESSATNEPLASIDEANVTPQENSTHEIDVGKEQVISSKESIEDDT
LEIRIDHQLASPDGEEPLSEDIDVGEDTIPEPASSRTRQANPDSSRDARL
DSTSYSKMADSTSAFRPFSAASTSAMRSSVIRSIRACLHILWAASSRRPR
ATFSFFGILVQTFL*
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mRNA from alignment at F-serratus_M_contig93:358698..360048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig93.20681.1 ID=mRNA_F-serratus_M_contig93.20681.1|Name=mRNA_F-serratus_M_contig93.20681.1|organism=Fucus serratus male|type=mRNA|length=1351bp|location=Sequence derived from alignment at F-serratus_M_contig93:358698..360048- (Fucus serratus male)
ATGATCGAAGTGATGGAATCATCCGCGACAAATGAGCCCTTAGCGTCGAT
TGACGAGGCGAATGTTACACCACAAGAAAACAGTACGCACGAAATCGACG
TCGGTAAAGAGCAAGTAATATCATCGAAAGAAAGTATAGAAGATGATACT
CTGGAAATACGCATTGATCACCAACTAGCGTCCCCGGATGGGGAAGAGCC
TCTCAGTGAGGATATCGACGTCGGAGAAGATACAATACCCGAACCTGCGT
CTAGCAGAACTCGACAAGCTAACCCAGATTCGTCTAGGGACGCTCGACTT
GATGTCGATCTGGGGTCGATAACTGCCCAAATGTGGAGTCAGGAACAATT
ACAGGAACCAGTCTGCAAAAGTGTGATCACTCTTTTGCAGCAAGGTCTGA
GTGGTTCAGCTCCACAAAACATTGTGCTTCAATTTCCAGCACGGACGCGG
CCCACAGTACAACAAGTGCTAGAGCTTGCGGCCAAGTGTAGGCTGTTCAC
TACAGAAGGGAACTTACCGTTCCTAGTAAAACGTCGTAACAGCAGAGCAG
AGCTACCGCATGTGGGAGGCAGGGTTCCTCAAATCTATGTCCCGATGCTG
ATGAGACCCTGGGTCCTCAAGGGATGTCATGCGGATTCAGTCTGCCATTT
TGGAGTTACTCGTACTTTACAAATGGTACAGCGTTTTTACTGGTGGATTG
GGTTGGACCAGAGCGTGAGGTGGTGGATCAGGAGGTGTCTTTTCTGCCAA
GCACGAAATACATCACGGCAGACGATCCGATGGCCAACCATGCTGATGCC
CCTATCTAGTGGGCCAGGCCAAATCATCAGCGTCGATTACTTTGGCCCTC
TACGGATTACAAGACAGGGTAACAAACATATACTGCTCTACACGGATAGG
TTCAGCAGACATATTGCCGCGTACGCTATTACCCAAGACGAACGCACAGC
GGAGGAACTGCTCGGATTTTCGGTAGAGGGCCAAAGTAATCGACACTGAT
GATTTGGCCTGGCCCACTAGGTGGGGGCATCAGCGTGGTTGGCCATCGGA
TCGTCTGCCGTGATGTTTTTCGTGCTTGGCAGAAAAGACACCTCCTGATC
CACCACCTCACGCTCTGGTCCAACCCGATCCACCAGTAAAAACGCTGTAC
CATTTGTAGAGTACGAGTTACTCCAAAATGGCAGACTCCACTTCCGCCTT
CAGGCCTTTTAGTGCCGCGTCCACGTCCGCGATGCGGTCCTCCGTGATAC
GCAGCATCCGGGCGTGCCTCCACATACTGTGGGCTGCTTCCTCGAGGCGG
CCCCGGGCGACTTTCTCCTTTTTTGGTATTCTTGTTCAAACATTTCTTTA
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig93:358698..360048-

>mRNA_F-serratus_M_contig93.20681.1 ID=mRNA_F-serratus_M_contig93.20681.1|Name=mRNA_F-serratus_M_contig93.20681.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig93:358698..360048- (Fucus serratus male)
ATGATCGAAGTGATGGAATCATCCGCGACAAATGAGCCCTTAGCGTCGAT
TGACGAGGCGAATGTTACACCACAAGAAAACAGTACGCACGAAATCGACG
TCGGTAAAGAGCAAGTAATATCATCGAAAGAAAGTATAGAAGATGATACT
CTGGAAATACGCATTGATCACCAACTAGCGTCCCCGGATGGGGAAGAGCC
TCTCAGTGAGGATATCGACGTCGGAGAAGATACAATACCCGAACCTGCGT
CTAGCAGAACTCGACAAGCTAACCCAGATTCGTCTAGGGACGCTCGACTT
GATATGATCGAAGTGATGGAATCATCCGCGACAAATGAGCCCTTAGCGTC
GATTGACGAGGCGAATGTTACACCACAAGAAAACAGTACGCACGAAATCG
ACGTCGGTAAAGAGCAAGTAATATCATCGAAAGAAAGTATAGAAGATGAT
ACTCTGGAAATACGCATTGATCACCAACTAGCGTCCCCGGATGGGGAAGA
GCCTCTCAGTGAGGATATCGACGTCGGAGAAGATACAATACCCGAACCTG
CGTCTAGCAGAACTCGACAAGCTAACCCAGATTCGTCTAGGGACGCTCGA
CTTGATAGTACGAGTTACTCCAAAATGGCAGACTCCACTTCCGCCTTCAG
GCCTTTTAGTGCCGCGTCCACGTCCGCGATGCGGTCCTCCGTGATACGCA
GCATCCGGGCGTGCCTCCACATACTGTGGGCTGCTTCCTCGAGGCGGCCC
CGGGCGACTTTCTCCTTTTTTGGTATTCTTGTTCAAACATTTCTTTAGAG
TACGAGTTACTCCAAAATGGCAGACTCCACTTCCGCCTTCAGGCCTTTTA
GTGCCGCGTCCACGTCCGCGATGCGGTCCTCCGTGATACGCAGCATCCGG
GCGTGCCTCCACATACTGTGGGCTGCTTCCTCGAGGCGGCCCCGGGCGAC
TTTCTCCTTTTTTGGTATTCTTGTTCAAACATTTCTTTAG
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