mRNA_F-serratus_M_contig929.20676.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig929.20676.1
Unique NamemRNA_F-serratus_M_contig929.20676.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig929.20676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig929contigF-serratus_M_contig929:193894..194521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size152
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932679.8409598-CDS-F-serratus_M_contig929:193894..1940021622932679.8409598-CDS-F-serratus_M_contig929:193894..194002Fucus serratus maleCDSF-serratus_M_contig929 193895..194002 -
1690964418.950894-CDS-F-serratus_M_contig929:193894..1940021690964418.950894-CDS-F-serratus_M_contig929:193894..194002Fucus serratus maleCDSF-serratus_M_contig929 193895..194002 -
1622932679.865169-CDS-F-serratus_M_contig929:194479..1945211622932679.865169-CDS-F-serratus_M_contig929:194479..194521Fucus serratus maleCDSF-serratus_M_contig929 194480..194521 -
1690964418.9630938-CDS-F-serratus_M_contig929:194479..1945211690964418.9630938-CDS-F-serratus_M_contig929:194479..194521Fucus serratus maleCDSF-serratus_M_contig929 194480..194521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig929.20676.1prot_F-serratus_M_contig929.20676.1Fucus serratus malepolypeptideF-serratus_M_contig929 193895..194521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig929.20676.1

>prot_F-serratus_M_contig929.20676.1 ID=prot_F-serratus_M_contig929.20676.1|Name=mRNA_F-serratus_M_contig929.20676.1|organism=Fucus serratus male|type=polypeptide|length=50bp
GGRSAAGSPGSAPQAIQSPDHVRQKFVKSLQRKVDAAITDKSRFPFTDFM
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mRNA from alignment at F-serratus_M_contig929:193894..194521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig929.20676.1 ID=mRNA_F-serratus_M_contig929.20676.1|Name=mRNA_F-serratus_M_contig929.20676.1|organism=Fucus serratus male|type=mRNA|length=628bp|location=Sequence derived from alignment at F-serratus_M_contig929:193894..194521- (Fucus serratus male)
GGCGGCCGGAGTGCAGCTGGATCACCAGGCAGTGCACCGCAGGTGCTTGT
TTTTTGTTTCATTGTTGTCATGGGACTTTGACTATTGCTTTGCCGTGAGA
TATCGGGATACGTACACACAGCGTGTCGGCAAATGGCTTTTACCCTGTGG
TGTAATGGTAACCTTATCACATACCACTTGTACAATGTACTACTATATGA
TTGTATCTTTATACGAACAAGTTGTACTGGTAGTTGAATTTTACCCTGTG
GTGTATTATTAATAGTAACCTTATCACATACTCCGTACTTGTTCAACCTA
AATGATTGTATGTATAGTCACACATATAGCAAGGGTATGGATCAACCTGG
TAAGGCTGCCAATTCTGCTCGTGGTCAGCTGAACAGCAAAAATAATATTT
CTCTGTCCGCGTTCGTGCCTGAAAATTTGGTATCGCGAGACGGTTGTATC
TTTACACGAACAAGTTGTACTAGTATGTACTGTACTGGTATTGTTCTTGT
GTTTATCCGTATGGTCCAGGCTATACAGTCGCCTGATCATGTGCGGCAGA
AATTCGTCAAGAGTCTGCAACGCAAGGTCGATGCCGCCATCACTGACAAG
AGCCGGTTTCCGTTCACCGACTTCATGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig929:193894..194521-

>mRNA_F-serratus_M_contig929.20676.1 ID=mRNA_F-serratus_M_contig929.20676.1|Name=mRNA_F-serratus_M_contig929.20676.1|organism=Fucus serratus male|type=CDS|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig929:193894..194521- (Fucus serratus male)
GGCGGCCGGAGTGCAGCTGGATCACCAGGCAGTGCACCGCAGGGCGGCCG
GAGTGCAGCTGGATCACCAGGCAGTGCACCGCAGGCTATACAGTCGCCTG
ATCATGTGCGGCAGAAATTCGTCAAGAGTCTGCAACGCAAGGTCGATGCC
GCCATCACTGACAAGAGCCGGTTTCCGTTCACCGACTTCATGGCTATACA
GTCGCCTGATCATGTGCGGCAGAAATTCGTCAAGAGTCTGCAACGCAAGG
TCGATGCCGCCATCACTGACAAGAGCCGGTTTCCGTTCACCGACTTCATG
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