mRNA_F-serratus_M_contig929.20675.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig929.20675.1
Unique NamemRNA_F-serratus_M_contig929.20675.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig929.20675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig929contigF-serratus_M_contig929:190577..190915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig929.20675.1prot_F-serratus_M_contig929.20675.1Fucus serratus malepolypeptideF-serratus_M_contig929 190622..190915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932679.7645812-UTR-F-serratus_M_contig929:190576..1906211622932679.7645812-UTR-F-serratus_M_contig929:190576..190621Fucus serratus maleUTRF-serratus_M_contig929 190577..190621 -
1690964418.9119165-UTR-F-serratus_M_contig929:190576..1906211690964418.9119165-UTR-F-serratus_M_contig929:190576..190621Fucus serratus maleUTRF-serratus_M_contig929 190577..190621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932679.784643-CDS-F-serratus_M_contig929:190621..1906561622932679.784643-CDS-F-serratus_M_contig929:190621..190656Fucus serratus maleCDSF-serratus_M_contig929 190622..190656 -
1690964418.9290264-CDS-F-serratus_M_contig929:190621..1906561690964418.9290264-CDS-F-serratus_M_contig929:190621..190656Fucus serratus maleCDSF-serratus_M_contig929 190622..190656 -
1622932679.8033044-CDS-F-serratus_M_contig929:190803..1909151622932679.8033044-CDS-F-serratus_M_contig929:190803..190915Fucus serratus maleCDSF-serratus_M_contig929 190804..190915 -
1690964418.9397964-CDS-F-serratus_M_contig929:190803..1909151690964418.9397964-CDS-F-serratus_M_contig929:190803..190915Fucus serratus maleCDSF-serratus_M_contig929 190804..190915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig929.20675.1

>prot_F-serratus_M_contig929.20675.1 ID=prot_F-serratus_M_contig929.20675.1|Name=mRNA_F-serratus_M_contig929.20675.1|organism=Fucus serratus male|type=polypeptide|length=49bp
PAFTLEWNADVQQIEEGKAPFEPIYRRRSRISSRTGKRTTTTVTRGRR*
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mRNA from alignment at F-serratus_M_contig929:190577..190915-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig929.20675.1 ID=mRNA_F-serratus_M_contig929.20675.1|Name=mRNA_F-serratus_M_contig929.20675.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig929:190577..190915- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACGTGAGTGACCTAAGCACTTTCATTTGTTTTGTCGCGTC
CTGCTGGTCAACCTTTTGTGTCGCGCGTCCGGACGAAGTACGTGTATTGT
CAGCGGACACGTGTTTCACCTGTACTCCCTTTCGGCGGCGCTGTTATTTT
TTTTGCAAGGCACAACTACAACCGTAACGAGAGGGAGACGCTGAGCAGAG
TGCCGAACATACTTCGCCCGCTCCGTGAACCTGGAGTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig929:190577..190915-

>mRNA_F-serratus_M_contig929.20675.1 ID=mRNA_F-serratus_M_contig929.20675.1|Name=mRNA_F-serratus_M_contig929.20675.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig929:190577..190915- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCA
GATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACGCACAACTACAACCGTAACGAGAGGG
AGACGCTGAGCACAACTACAACCGTAACGAGAGGGAGACGCTGA
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