mRNA_F-serratus_M_contig927.20665.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig927.20665.1
Unique NamemRNA_F-serratus_M_contig927.20665.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 2.860e-63
Identity = 121/300 (40.33%), Postives = 171/300 (57.00%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPID-YSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLL 894
            L  S P K+LGE+ ++LGC I+RDR+A T+   Q+ Y +   ERF I +TS IP        S A+  +   E  E   +P+RE  G LMW+AN TRP  +    T+A+    P    WKA  K L +LK TA L + Y    T D+    +VDAD AS    RRSVS   V++ G  +SWF   Q+  + +TSE+EY+A+ + V E   +  +  FL P      I V ED +GAI +A+N  SS R++HIDV+HH + +  + G++ V +V S+EQHAD+ TKA+    FE H  F+L
Sbjct:   89 LGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFVL 381          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.670e-57
Identity = 117/300 (39.00%), Postives = 170/300 (56.67%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPID-YSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLL 894
            L  S P K+LG++ ++LGC  +RDR+A T+   Q+ Y ++  ERF I +TS IP        S A+  +   E  E   +P+RE  G LMW+AN TRP  +    T+A+    P    WKA  + L +LK TA L + Y    T D+    +VDAD AS    RRSVS   V++ G  +SWF   Q+  + +TSE+EY+A+ + V E   +  +  FL P      I V ED +GAI +A+N  SS R++HIDV+HH + +  + G++ V +V S+EQHAD+ TKA+    FE H   +L
Sbjct:  984 LGDSLPTKNLGKVIFFLGCAFSRDREAGTIEISQESYIRSVLERFNISRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQRILSNLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVHRDLVL 1276          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 201 bits (510), Expect = 4.030e-57
Identity = 111/292 (38.01%), Postives = 169/292 (57.88%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKA-PLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYGGATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPIDYSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFE 873
            + + F IK+LG + + LG  I  DR  R ++ +Q  Y +T  ERF  +    +  P  ++  LSKADGP+DD +  EM   PYR   G L +VA  TRP +A+    L++F +NPGP HW A ++ L++LK T   G++YGG  E+     + DAD  +  D RRSVS   +M+ GG I +  + Q   A ++SE+EY+AL+    E+  +  +   L   I   I+V ED +GAI +A N     RT+HID++HH V D V   ++++ YV+++ Q AD+ TK++  K FE
Sbjct:  209 IAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 6.540e-57
Identity = 115/292 (39.38%), Postives = 165/292 (56.51%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPID-YSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSF 870
            L  S P K+LGE+ ++LGC  +RDR+A T+   Q+ Y ++  ERF I +TS IP        S A+  +   E  E   +P+RE  G LMW+AN TRP  +    T+A+    P    WKA  K L +LK TA L + Y    T D+    +VDAD AS    RRSVS   V++ G  +SWF   Q+  + +TSE+EY+A+ + V E   +  +   L P      I V ED +GAI +A+N  SS R++HIDV+HH + +  + G++ V +V S+EQHAD+ TKA+    F
Sbjct:  429 LGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.380e-55
Identity = 118/306 (38.56%), Postives = 171/306 (55.88%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRG---IPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPID-YSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLLNVR 903
            L  S P K+LGE+ ++LGC   RDRKA T+   Q+ Y ++  ERF I +TS IP     A L+      DD  + E  G   +P+RE  G+LMW+A+ TR  ++     +A+    P   HWKA  K L +L  TA L + +   ++ D+    +VDAD AS    RRSVS   V +    + W  R Q+  + +TSESEY+A+ + V E   +  +  FL P +    I V ED +GAI +A+N  SS R++HIDV+HH + +  + G++ V +V S+EQHAD+ TKA+    FE H  F L  R
Sbjct:  895 LGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIP-----ASLNN-----DDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALGSR 1190          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.730e-55
Identity = 117/306 (38.24%), Postives = 171/306 (55.88%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRG---IPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPID-YSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLLNVR 903
            L  S P K+LGE+ ++LGC   RDRKA T+   Q+ Y ++  ERF I +TS IP     A L+      DD  + E  G   +P+RE  G+LMW+A+ TR  ++     +A+    P   HWKA  K L +L  TA L + +   ++ D+    +VDAD AS    RRSVS   V +    + W  R Q+  + +TSE+EY+A+ + V E   +  +  FL P +    I V ED +GAI +A+N  SS R++HIDV+HH + +  + G++ V +V S+EQHAD+ TKA+    FE H  F L  R
Sbjct: 1105 LGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIP-----ASLNN-----DDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDFALGSR 1400          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 5.900e-55
Identity = 113/302 (37.42%), Postives = 166/302 (54.97%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPI-DYSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLLNV 900
            L  S P K+LGE+ ++LGC   RDR+A T+   Q+ Y ++  ERF + +TS IP        S     +   E  E   +P+RE  G  MW+A+ TRP ++     +A+    P   HWKA  K L +L  TA L + +   ++ D+    +VDAD AS    RRSVS   V + G  + W  R Q+  A +TSE+EY+A+ + V E      +  FL P      I+V ED +GAI +ADN  SS R +HIDV+HH +    + G +++ +V S+EQHAD+ TKA+  + FE H  F+L +
Sbjct:  383 LGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPA-------SPTVVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGL 677          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 4.160e-52
Identity = 112/299 (37.46%), Postives = 160/299 (53.51%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPIDYSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLL 894
            L  S P K+LGE+ ++LGC  +RDR+A T+   Q+ Y ++  ERF I +TS IP        S A+  +   E  E   +P+RE  G LMW+AN TRP  +    T+A+    P    WKA  K L +LK TA L + Y    T D+    +VDAD AS    RRSVS   V++ G  +SWF   Q+  + +TSE+EY+A+ + V E   +  +  FL P                    N  SS R++HIDV+HH + +  + G++ V +V S+EQHAD+ TKA+    FE H  F+L
Sbjct:  698 LGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPK-------------------NPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVHRDFVL 970          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.240e-52
Identity = 109/298 (36.58%), Postives = 171/298 (57.38%), Query Frame = 1
Query:   16 PIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPP-IDYSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLLNVR 903
            P+K LGE+ +Y GC+  R R+A  +T  +Q Y +   ER  +     IP+PT        D   D   +      P+R   G+L+W+A +TRP +A +   +A++   P   HWKA +  L +  RT+SLG+++  G      L A+VDAD+AS    RRSVS G VM  GGAI+WF + Q     +T++SEYVA+A++  E+  + QV  F++P  +   I ++ED +GAI++A +  S   ++HIDV+HH +   VD   V + +V S+ QHAD  TKA+  + F  H  +++N++
Sbjct:  465 PVKSLGELKWYSGCYYERGREAGRLTISRQTYTEELGERHGVEWGGGIPLPTT---WEHWDFDLDKPSVE----YPFRGLVGSLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADFLTKALPEREFVSHRDYVMNLK 755          
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 3.710e-51
Identity = 110/299 (36.79%), Postives = 158/299 (52.84%), Query Frame = 1
Query:    1 LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKTSVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGLAYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYG-GATEDMKLSAWVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVALAEIVNELRLIWQVKAFLVPPIDYSIRVHEDKKGAIKMADNRFSSRRTRHIDVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLL 894
            L  S P K+LGE+ ++LGC  +RDR+A T+   Q+ Y ++  ERF I +TS IP        S A+  +   E  E   +P+RE  G LMW+AN TRP  +    T+A+    P    WKA  K L +LK TA L + Y    T D+    +VDAD AS    RR VS   +++ G  +SWF   Q+  + +TSE+EY                             V ED +GAI +A+N FSS R++HIDV+HH + +  + G+++V +V  +EQHAD+  KA+    FE H  F+L
Sbjct:  994 LGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTIVYVDADFASKATDRRPVSGALILVAGCLVSWFSWTQKCVSLSTSEAEYX----------------------------VFEDNEGAIALAENPFSSSRSKHIDVRHHFLRNLTEEGVIKVTHVPIKEQHADILAKALARNLFEVHRDFVL 1257          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig927.20665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE7_9PHAE2.860e-6340.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JH25_9PHAE3.670e-5739.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CTN1_PYTOL4.030e-5738.01Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5JV80_9PHAE6.540e-5739.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE1.380e-5538.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.730e-5538.24Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE5.900e-5537.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J594_9PHAE4.160e-5237.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWA6_9PHAE6.240e-5236.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K622_9PHAE3.710e-5136.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig927contigF-serratus_M_contig927:201447..202352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue3.9e-45
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size906
Cds size906
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932677.958772-CDS-F-serratus_M_contig927:201446..2023521622932677.958772-CDS-F-serratus_M_contig927:201446..202352Fucus serratus maleCDSF-serratus_M_contig927 201447..202352 +
1690964417.9515114-CDS-F-serratus_M_contig927:201446..2023521690964417.9515114-CDS-F-serratus_M_contig927:201446..202352Fucus serratus maleCDSF-serratus_M_contig927 201447..202352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig927.20665.1prot_F-serratus_M_contig927.20665.1Fucus serratus malepolypeptideF-serratus_M_contig927 201447..202352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig927.20665.1

>prot_F-serratus_M_contig927.20665.1 ID=prot_F-serratus_M_contig927.20665.1|Name=mRNA_F-serratus_M_contig927.20665.1|organism=Fucus serratus male|type=polypeptide|length=302bp
LQSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYAQTATERFEIRKT
SVIPVPTGKAPLSKADGPQDDAEITEMRGIPYREAAGALMWVANMTRPGL
AYTAHTLAKFGDNPGPEHWKAVMKALQHLKRTASLGVTYGGATEDMKLSA
WVDADHASCPDMRRSVSEGAVMLGGGAISWFLRAQRITATATSESEYVAL
AEIVNELRLIWQVKAFLVPPIDYSIRVHEDKKGAIKMADNRFSSRRTRHI
DVKHHMVWDAVDGGIVRVEYVKSREQHADVRTKAIDAKSFEKHARFLLNV
R*
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mRNA from alignment at F-serratus_M_contig927:201447..202352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig927.20665.1 ID=mRNA_F-serratus_M_contig927.20665.1|Name=mRNA_F-serratus_M_contig927.20665.1|organism=Fucus serratus male|type=mRNA|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig927:201447..202352+ (Fucus serratus male)
CTTCAATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGTACTACCT GGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGTGACGTTCGATC AGCAGCGTTACGCGCAGACGGCAACCGAGCGATTCGAAATTCGGAAGACC AGCGTGATCCCTGTTCCGACGGGGAAAGCGCCACTTTCGAAGGCAGACGG GCCGCAAGACGACGCTGAGATCACAGAGATGCGTGGCATCCCGTATCGCG AGGCAGCGGGGGCACTAATGTGGGTAGCCAACATGACTCGGCCTGGCTTA GCTTACACCGCGCACACGCTCGCCAAGTTCGGTGACAACCCCGGGCCCGA GCACTGGAAGGCAGTAATGAAAGCGCTACAGCATCTGAAACGAACGGCGA GCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATGAAGCTGTCGGCA TGGGTGGACGCCGATCACGCATCATGCCCTGATATGCGCCGTTCGGTATC GGAGGGCGCGGTGATGCTCGGTGGAGGGGCAATCAGTTGGTTTTTGCGGG CGCAAAGAATAACCGCGACAGCGACGTCCGAATCGGAGTACGTAGCACTG GCGGAGATTGTGAATGAGCTACGTTTAATTTGGCAGGTGAAAGCGTTTCT GGTACCTCCAATCGACTACAGCATCCGTGTTCACGAGGACAAAAAGGGCG CTATCAAGATGGCAGACAACAGATTTAGCAGTCGACGAACAAGACACATC GACGTGAAGCATCATATGGTTTGGGATGCCGTCGATGGGGGAATAGTCCG TGTAGAATATGTCAAGTCAAGAGAACAGCATGCGGACGTACGAACTAAGG CGATAGATGCTAAATCGTTTGAAAAGCACGCGCGATTCCTGTTGAACGTC CGTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig927:201447..202352+

>mRNA_F-serratus_M_contig927.20665.1 ID=mRNA_F-serratus_M_contig927.20665.1|Name=mRNA_F-serratus_M_contig927.20665.1|organism=Fucus serratus male|type=CDS|length=1812bp|location=Sequence derived from alignment at F-serratus_M_contig927:201447..202352+ (Fucus serratus male)
CTTCAATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGTACTACCT
GGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGTGACGTTCGATC
AGCAGCGTTACGCGCAGACGGCAACCGAGCGATTCGAAATTCGGAAGACC
AGCGTGATCCCTGTTCCGACGGGGAAAGCGCCACTTTCGAAGGCAGACGG
GCCGCAAGACGACGCTGAGATCACAGAGATGCGTGGCATCCCGTATCGCG
AGGCAGCGGGGGCACTAATGTGGGTAGCCAACATGACTCGGCCTGGCTTA
GCTTACACCGCGCACACGCTCGCCAAGTTCGGTGACAACCCCGGGCCCGA
GCACTGGAAGGCAGTAATGAAAGCGCTACAGCATCTGAAACGAACGGCGA
GCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATGAAGCTGTCGGCA
TGGGTGGACGCCGATCACGCATCATGCCCTGATATGCGCCGTTCGGTATC
GGAGGGCGCGGTGATGCTCGGTGGAGGGGCAATCAGTTGGTTTTTGCGGG
CGCAAAGAATAACCGCGACAGCGACGTCCGAATCGGAGTACGTAGCACTG
GCGGAGATTGTGAATGAGCTACGTTTAATTTGGCAGGTGAAAGCGTTTCT
GGTACCTCCAATCGACTACAGCATCCGTGTTCACGAGGACAAAAAGGGCG
CTATCAAGATGGCAGACAACAGATTTAGCAGTCGACGAACAAGACACATC
GACGTGAAGCATCATATGGTTTGGGATGCCGTCGATGGGGGAATAGTCCG
TGTAGAATATGTCAAGTCAAGAGAACAGCATGCGGACGTACGAACTAAGG
CGATAGATGCTAAATCGTTTGAAAAGCACGCGCGATTCCTGTTGAACGTC
CGTTAGCTTCAATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGTA
CTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAGGACGGTGACGT
TCGATCAGCAGCGTTACGCGCAGACGGCAACCGAGCGATTCGAAATTCGG
AAGACCAGCGTGATCCCTGTTCCGACGGGGAAAGCGCCACTTTCGAAGGC
AGACGGGCCGCAAGACGACGCTGAGATCACAGAGATGCGTGGCATCCCGT
ATCGCGAGGCAGCGGGGGCACTAATGTGGGTAGCCAACATGACTCGGCCT
GGCTTAGCTTACACCGCGCACACGCTCGCCAAGTTCGGTGACAACCCCGG
GCCCGAGCACTGGAAGGCAGTAATGAAAGCGCTACAGCATCTGAAACGAA
CGGCGAGCCTAGGGGTAACATATGGAGGCGCGACGGAGGACATGAAGCTG
TCGGCATGGGTGGACGCCGATCACGCATCATGCCCTGATATGCGCCGTTC
GGTATCGGAGGGCGCGGTGATGCTCGGTGGAGGGGCAATCAGTTGGTTTT
TGCGGGCGCAAAGAATAACCGCGACAGCGACGTCCGAATCGGAGTACGTA
GCACTGGCGGAGATTGTGAATGAGCTACGTTTAATTTGGCAGGTGAAAGC
GTTTCTGGTACCTCCAATCGACTACAGCATCCGTGTTCACGAGGACAAAA
AGGGCGCTATCAAGATGGCAGACAACAGATTTAGCAGTCGACGAACAAGA
CACATCGACGTGAAGCATCATATGGTTTGGGATGCCGTCGATGGGGGAAT
AGTCCGTGTAGAATATGTCAAGTCAAGAGAACAGCATGCGGACGTACGAA
CTAAGGCGATAGATGCTAAATCGTTTGAAAAGCACGCGCGATTCCTGTTG
AACGTCCGTTAG
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