mRNA_F-serratus_M_contig927.20661.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig927.20661.1
Unique Name	mRNA_F-serratus_M_contig927.20661.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig927.20661.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig927.20661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig927	contig	F-serratus_M_contig927:139704..146132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Model size	171
Cds size	171
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932675.0167394-CDS-F-serratus_M_contig927:139703..139788	1622932675.0167394-CDS-F-serratus_M_contig927:139703..139788	Fucus serratus male	CDS	F-serratus_M_contig927 139704..139788 -
1690964416.6111672-CDS-F-serratus_M_contig927:139703..139788	1690964416.6111672-CDS-F-serratus_M_contig927:139703..139788	Fucus serratus male	CDS	F-serratus_M_contig927 139704..139788 -
1622932675.0372303-CDS-F-serratus_M_contig927:146046..146132	1622932675.0372303-CDS-F-serratus_M_contig927:146046..146132	Fucus serratus male	CDS	F-serratus_M_contig927 146047..146132 -
1690964416.6224346-CDS-F-serratus_M_contig927:146046..146132	1690964416.6224346-CDS-F-serratus_M_contig927:146046..146132	Fucus serratus male	CDS	F-serratus_M_contig927 146047..146132 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig927.20661.1	prot_F-serratus_M_contig927.20661.1	Fucus serratus male	polypeptide	F-serratus_M_contig927 139704..146132 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig927:139704..146132-
coding sequence from alignment at F-serratus_M_contig927:139704..146132-

protein sequence of mRNA_F-serratus_M_contig927.20661.1

>prot_F-serratus_M_contig927.20661.1 ID=prot_F-serratus_M_contig927.20661.1|Name=mRNA_F-serratus_M_contig927.20661.1|organism=Fucus serratus male|type=polypeptide|length=57bp
MVTTENYLHGPNQKWALDFSQTKHIAFDLNETRGVKRISSYTLQTEQVGV
HTTLKSS

mRNA from alignment at F-serratus_M_contig927:139704..146132-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig927.20661.1 ID=mRNA_F-serratus_M_contig927.20661.1|Name=mRNA_F-serratus_M_contig927.20661.1|organism=Fucus serratus male|type=mRNA|length=6429bp|location=Sequence derived from alignment at F-serratus_M_contig927:139704..146132- (Fucus serratus male)
ATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTGGGCGTT
AGATTTCTCTCAAACTAAACATATTGCATTCGACTTGCAAACAGCGGCGA
AAGTTCAAACAACGGATTTTTGCGCGAATCAAAAGCAGTGACGTACTATT
GTAACTACTGCATAAAACCACGACCGCACGATAACAGTACCGAAACGACC
TCCCGTTACTATTCTATAGCCAAGATGAGATCCTCGCAGACCCACACAGA
GTACTTCCTATGGTCCCAGCGCCGGATTCATCAGTATCATAGTACAGTAC
CAAACACTCTTCCGTTATCTGTTTATGCCCAATCAAATGAAATCCTCGCA
GACCCAAAACGAAAACACTTCCTACGGTCCCAGCGTTGGATTCATCATCA
CAAATATCGGCCCACCGGTACTATCTTGGCCGGCCAATTTCTCGAAGATG
GGACGGTCTTCTGTCAGCGTGCCGTCCGTAAGCGTCTTCTACGCTGAACT
GGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTCGAAGTCTACCTGTCA
AAACAAATTATACTGTATGGGAAATTTTCGAATCCAGAAACAAAACCACG
CGCAAGACATTTTGCAATAATGGACACTGTCGTCAATCAGAACTGTCGTT
CGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCTGTAACTCGATCACAC
ACCTTCATCATGACACCCTTTTTCAAAAGGAAAGTCAGAAGGGAGATGAA
ATGCCGATGGGTGCTGCTCTCGTGAGCATACCCTTTTAAAACGGCTACCC
GCGGTATCAACTTGTCACCGAGTAGTCCGTGGGCGCTAAGTAACACGTAG
CCCACCCAAGCCCAAACCTCGGGCTTGCAGCGTCAGTTATCATCAGTAAG
CTGTACGCTGGTGATGTCTTTCGTGGCCATAAACCACTAGTCCCAGGAAA
AGGGAACTCAACCCATAGTAGTAGTCTAGCTGGGGTCAAGAATTTTCAGC
TCCGCACGTTGTCGCTTACAAACGGAGAATGGTCTGTACATTCAGACAGG
ACCAAAATCAAGTGTTACTCGTAAAGACTAGATAGCCCTCACAATACTGT
ACGTAGTTTCATTTTTGGTTGGTTGCCACAATCTTCGTTTCATAGTAGAG
TAACTTGCCTGGCTTCCCAATACCTATTTCTTGGAATTTCGTGTCGTGTC
CATTTTTTGTGGTTACGGCAAAACGCTACGCCCCTTTTTAATGACTTCTC
AATCAGATGTCACCCTTGAGATGTTCGGCTAACATTCGTCTGGTGATATT
GTAGCTCTGACGCTAACCAACGATCAATAAGCCCGTAGACGATTTCGCTT
AATTCTTTACCGTTGTCAGTTGCTGGAGTGGATCACTATTATCTTGTTGT
TGTTGTTGTTTTCTTATCTCAACACTCTGATTAATCACGCATATTTTCAG
AGATGCGTTGTCCAAGCGTTTGCTTGTATTGAGATTCAGAGTATTCTTGC
CCTAGGTTAGAATTGTTGTTACATACGGCAATAATGCGAGACATCTCGGC
TTCTACCGTAGAACGATCTCCCCATCTGGGCTACGAACAAGAGGGCATCG
CTCAGAGTCCTCTGTTCCTATCACGTTCGATTACCTATGGCTTTTGTCAG
CTTCGACGCCCGGCACGCCCGTGATATTCATTTTCTGCCATTACGGCAAC
TTACGGCTCCAATACTGTGTTGACCGTATTGAATGGTTTCTCTGTGGTCA
CATTTGCAACCAACTGGAATGGTTTTTTCTGTGGTCACATTCAGTGTAGT
AAATCGTCAGGCGGATTTTACCCACGTTTTTGCAACCAAGCTCCTCCTGG
CTATATTTGTTCGTACGGTCGCAACAACGTGGACCATTAAACAGGATATA
TTTTTCAGAATCGAGACCGTAGCCTTTTTCAGCTTCGTCCTTCTTACTTT
TTACCCTTGTATTGGCTACTTCTGGCCAACACTATTCTTCTTCCCCAATT
CGGGGTTGAGACATTACGATAGAGTCTTTCCAAGACTGTTGTATGTTGTC
TCTGTCATGGATACTAGCATCCACGGCAGCCCTAATGTTGTCAGTTTTTT
TTTTGTTTCAACACCGGTGTTTCATTATGGGGCGCCTTTCTTTCTCCTAT
CTCCCTCAAGGTTGCCTGATGCATTGCTTGAGTGAAGCGTTTTAAATCGT
CTGGCACTTTATTGCCAGAAGAGCGCTCAAGGTTGTTTTTCGATTGATCG
GATCATGCATACCTTGTCTATGCTCTGATGATGCGGCGATAATAGCGGTC
CGCCTATCTTTTGCCTTTCAGCTATCCGCGATCCTCCCTCCCAACTTAGA
GGGTGGTCAATCCTACGTAAGCTTGAAGTTCGAATGTTGGTATTAACTGT
ATCATCTCTCTTTTGTAGGCATGGTCGCGACGGAGACTATTGCTCCTCGC
ATGCCACTCGCGGAGTCGATTCTCACTCGTTTCATCTTGCCCCCGAGCCT
GACCAATGACCAGGAAGCGATCTGAAAACAGACTTTGAAACTGGCTCCTT
TGCCTGATTATTATTTTATTTTATTTTTGCCAGGTCATCCCACAAGCCAA
TGTGCTGTCCTGCCAAAAAAAAAGGATGTTTATTATTTAGGGATATGGAT
CAATGTCCTCCTTACTTTTCACCCTTATGTTCTGTACTAGACTTGTTTCG
GAATTCAGTCTAGACCGATGTAACTTCAAGCGTGCCGTTAGTTCCTATAG
ACTGCACACTGAATTTTGCAGTACTTGTAGCTTGAGTAACGAGCGAACAG
GGAGAGCCTATACTTCCGCTGAACTTATTCACTCGTATTAGTCGCTTGTT
GTACTTTCGAGTCACGAATATTCTCCGTGTTTTTACTATGTCCTCGGCGC
GGTTCATTTCATCCTGTCCTCTGACATGTTGTTTTCTCGTCGGTTTATCA
CACATTATTTCAAAAGTGTGCCGACATTGGAAAGGAGCAAATCTTTCGAC
GCATTGACTGCAGGCTAGTACAGTTTCTTTATCGCTATTCATTTGCATCG
CTCTGTTGTGTATCAGACATTATGTTTCCAGTTTCATCTCGTCTGAAGCA
ACGTATCACTCGATTTGAGTTTTTTCAGTGACGTTGTGATGTCGTTTCGT
TTTTTTCTCTTCCACACATATGGCAGCACCCAATGTATTCGTCATACGCT
ACGGGCTCGATTCATATGTGCCCCCTAGGGAGTGGGGTATGGCTCGCGTC
TTCGTTACGCGCTTTTGTCGTTTTGGTACCATCGGGAAGCTCCCTCATTC
CCTTACCCCTCGAGGTTAACTCGTGCAGAGCTCGAGTGGGTCATTTAACA
CCTGAGTCTGGATGCTCAGGCAAGCTCCCAAAATTTTTTTGAGCTGATCA
GGCCTTCCCAATTTTGGTTTCGCTCCGGTTTCATCTTACCTTTTTTGAAT
ATGGCTGGCGACATTGATCGGTCGTACTGCTGGTCGCGTGCCATACGCCT
TCGATTGACGCTCGAAGTGTCTGCTTTGCCGACTGCGTTCGACGAGCGGT
TTGTAATCAGAAATAAGAGCACGTCTAATTTCTTTATTTTTGTATCGCTA
TCTTTCCCATCCAAGGTTAATCTATTCAGAGCTTGGATTGAGCATTTCCG
CGATGTTTCCTGGTCTAGCCTTTGCATAGAGCGTCTCAAAATCTCATCAT
TTTGAGTTCGCCCAGGTGATAGTTCGTCGTCATCACCTTCTTACAGCTAC
CAGTAGCTTGCAATTCATCGCATGCCACTGTCTTTTCTGTAATGCGCATT
GCGCCGGTCTCCACTTTTTCTATACGTTGTATACGAGTCGGAGATGTAGT
TTCGTCTGTTGATAGACATTTCTGCGAACATTCTGTGAGAGATCAACCGC
AGTCACACCTGCCCAGTTGTCATGTGTTATTGTTCGACTTGTAGTACCTT
CGACTGCTACTGGCGAGACAGAAGGTAACATCCCATCATCGGATTGTATG
TCTGTTCTAGATCACTAGAATTGGGAGTCTTCACAAAGTTCTTGGTTGTA
ACTGTTGTCACTGCCACTTCCAACCTATCACTGCTTTGACGACTTGTAGC
ATTTTCAGCGGAATTACTTTTCGGCGTGTGCTCGGAGTTTATTTTTGACC
TATTAGGAGTTGTTCGCCCAACTGACTCTTTCTCAGGTTCGGCACGCAAT
TCTCCGATATTGCTGTCCGTAAGACCGCTATTGTCTAGGAATGGCTTGGG
GCATATTCGCATGTTGCTGAACGTAGCGGGCTTGGTTTTGGGGTCAGAAC
GTCGCGCTAGCAATGGCGGCTCGCCATCCTTTTGAATGTTATACCCAGTA
CCCCATGTCTCGATTAGAGCTGACCACGAAGGAAAATCTGCTTTGGAAAT
TTTCACGTTTATGACCGATTCGTGTCCCGACCCACACTTTATCTTTGTTT
TAAAGAGGGTCGCACGGACCAAATTCTGCAGTAGTACGTCCCCGACTGCC
TGTTGCAGTCCTTGGGAGAAGCTCTCCATGTGATCCCATAGGTCCTTCAG
AATAGCTGCTTCGATGTCCGCCAGCTCCGGGAAACCGTTCCTCCAGGAAA
AGTCATTTTCCACAACCCAAACTAGCTCCGCGATGGCTCTCTGGGCTGTC
AGATCCATTGGCTCCTGGCACTGAGCTGACCCGAGCTCCCGCAGAGAGTG
GAATTTCCATTCGCTCAAAGTGTTGAATTTGTCGATGAATTTGGCTATTT
TATCCCATGGCCGGGGCGTCCACCTACGTCCCTGGGCGTAACGGCGCTCC
GACTGGGAGCCCACCCAAGCTGATACCTCCGCTCTCGCCGCCTTAAGTGG
CTGCCGCGGCCAGTCCTGGTGAATCGTGGGCCCAATTTCTTGGTCCGATC
TTGCTTTCTCCACTAAGCCCTCCTGAGCCTTTTTGGCCAGCGCTTCACGA
ACTCTGGAGATGCCTTCTTCAAGCACCCTGGTGGATTCCTCAGCCTCCGC
GATGGTGTTCGGATGGACCAGGCGATAAGCCTGCCATAATTTCGACTGAA
TTATTTCGCGTAGCCCAATCCAGTGCTCCAGGCCCAAGGTAAAATCCGGC
GGAGGTCTCAACTCCGTAGAGCCTCGCGCTGTGGACGTTTGTCCCATCAA
ATTGTCTGAGCCTCCCATTTGGCTCACTGACGTATCCGGGATCAAGGGCG
TATGCCCTGTTGCAGCCTTTGAGAGTTCCTCCCTGCATTGCCCTCTACGC
TCAACGGCGTCTGTGAAGTCGCGGTGTTTTTCCCGCTGCGCAGTTCTCGG
AGGCCCTTCCTCGCTGCCTATACTTGGAATCAAGGGCATTTGCCCTGTTG
CAGTCTCTGAGGGTTCCCCCTGCATTGCCCTCTACGCTCGATGGCGTCTG
TGAAGTCGCGGATTTTATCCCGCTGCGCAGTTCTCGGAGGCCCTTCCTCG
CTGCCTATACTCAGAATCAAGGACATCTGCCCTGTTGCAGTCTCTGAGGG
TTCTCCCCTGCATTGCCCTCTACGCTCGACGGCGTCGTCTTTTATCCCGT
GAAGTCGCGGATTTTTGCATCCCGCTCCCCTGCGCAGGTCTTGAAGTCGC
GGATTTTATCCCGCCCTTCCCTTCCTCACTGCCCATACTCGTGCCCATTC
TAACTGCGGTCATCCCTTTCCTCTCCGACGTTCTCCGGGTCGATGCCATT
ACGGCCCTCGGTTTCCCAAGCGAATGAAGTGTCCCTCGATCGAGACTCGC
TTTCCTCGATGGTCCTCAAAGCGATTGAAGTGTCCCTCTATCGAGACTCG
CTTTCCCTGATGATCCTCAAAGCGATTGAAGTGTCCCTCGATCGAGACTC
GCTTTCCCTGACTCCTCAAAGCGATTGAAGTGTCCCTCGATCGAGACTCG
CTTTCCCTGATGACCCTCAAAGCGATTGAAGTGTCCCTCGATCGAGACTC
GCTTTCCCTGATGATCCTCAAAGCGACTGAAGTGTCCCTCTATCGAGACT
CGCTTTCCCTGATGATCCTCAAAGCGATTGAAGTGTCCCTCTATCGAGAC
TCGCTTTCCCTGATGATCCTCAAAGCGATTGAAGTGTCCCTCTATCGAGA
CTCGCTTTCCCTGATGATCCTCAAAGCGACTGAAGTGTCCCTCGATCGAG
ACTCGCTTTAACGATGAGAACGGCCTGACCACCGTCCTACCGTCGACGCC
AAATTGTTATGGAGTTATCCAACTCCCTGTAGATTCTTTGACGGTGGTAT
GTGTCTCGCTCAGGAGACCAGGCGAAGGATGGATGTATAAAAAGGTATCT
TCGTTAACTTTCGTCCCTTGAAGTACCTACCGACTTACTCATAGAAATGA
AACACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGACTGAACAGG
TGGGGGTTCACACCACCCTAAAATCAAGC

Coding sequence (CDS) from alignment at F-serratus_M_contig927:139704..146132-

>mRNA_F-serratus_M_contig927.20661.1 ID=mRNA_F-serratus_M_contig927.20661.1|Name=mRNA_F-serratus_M_contig927.20661.1|organism=Fucus serratus male|type=CDS|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig927:139704..146132- (Fucus serratus male)
ATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTGGGCGTT
AGATTTCTCTCAAACTAAACATATTGCATTCGACTTATGGTTACTACAGA
GAATTATCTGCACGGCCCAAACCAGAAGTGGGCGTTAGATTTCTCTCAAA
CTAAACATATTGCATTCGACTTAAATGAAACACGAGGAGTCAAACGTATA
TCAAGTTACACGTTGCAGACTGAACAGGTGGGGGTTCACACCACCCTAAA
ATCAAGCAAATGAAACACGAGGAGTCAAACGTATATCAAGTTACACGTTG
CAGACTGAACAGGTGGGGGTTCACACCACCCTAAAATCAAGC