mRNA_F-serratus_M_contig927.20658.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig927.20658.1
Unique NamemRNA_F-serratus_M_contig927.20658.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig927.20658.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.210e-12
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 RWCVVDREEMSTVESSSERMRG--------------LTTFIGVPSEIPLVDVADCLFYHSRPRHIAPLPCRGPTA 183
            RWC+VD E MS VE +S+RMR               L  F+ VP+ +PLVDVA+ LF+ SRPRHIAPL  R P A
Sbjct: 1313 RWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAPLYPRAPGA 1387
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig927.20658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIY1_9PHAE3.210e-1250.67SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig927contigF-serratus_M_contig927:122439..123156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig927.20658.1prot_F-serratus_M_contig927.20658.1Fucus serratus malepolypeptideF-serratus_M_contig927 122466..123156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932677.0108752-UTR-F-serratus_M_contig927:122438..1224651622932677.0108752-UTR-F-serratus_M_contig927:122438..122465Fucus serratus maleUTRF-serratus_M_contig927 122439..122465 +
1690964417.492405-UTR-F-serratus_M_contig927:122438..1224651690964417.492405-UTR-F-serratus_M_contig927:122438..122465Fucus serratus maleUTRF-serratus_M_contig927 122439..122465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932677.0302613-CDS-F-serratus_M_contig927:122465..1225011622932677.0302613-CDS-F-serratus_M_contig927:122465..122501Fucus serratus maleCDSF-serratus_M_contig927 122466..122501 +
1690964417.5010478-CDS-F-serratus_M_contig927:122465..1225011690964417.5010478-CDS-F-serratus_M_contig927:122465..122501Fucus serratus maleCDSF-serratus_M_contig927 122466..122501 +
1622932677.0489426-CDS-F-serratus_M_contig927:122955..1231561622932677.0489426-CDS-F-serratus_M_contig927:122955..123156Fucus serratus maleCDSF-serratus_M_contig927 122956..123156 +
1690964417.510165-CDS-F-serratus_M_contig927:122955..1231561690964417.510165-CDS-F-serratus_M_contig927:122955..123156Fucus serratus maleCDSF-serratus_M_contig927 122956..123156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig927.20658.1

>prot_F-serratus_M_contig927.20658.1 ID=prot_F-serratus_M_contig927.20658.1|Name=mRNA_F-serratus_M_contig927.20658.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MSTVESSSERMRGLTTFIGVPSEIPLVDVADCLFYHSRPRHIAPLPCRGP
TAEARMAEDCSASPGRAFSRSRPGGSSAG
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mRNA from alignment at F-serratus_M_contig927:122439..123156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig927.20658.1 ID=mRNA_F-serratus_M_contig927.20658.1|Name=mRNA_F-serratus_M_contig927.20658.1|organism=Fucus serratus male|type=mRNA|length=718bp|location=Sequence derived from alignment at F-serratus_M_contig927:122439..123156+ (Fucus serratus male)
CGCTGGTGCGTGGTCGATCGCGAGGAAATGTCGACGGTCGAGAGCTCGAG
CGAGCGCATGCGGGTAAGGCAGTACTCCATCACTGCGATTGACATCAGAA
TATCTCTCACAATACAACCAGTGCAAAGCTATTAGAGTGTAGCGCAAGAT
ACTCAAACGAGGAAGCTTCTCGTTCGTCCCTCTTTGAAATGCCTTGCATC
TCTCAGTTGCGCGATCGTTACTTTTACTATATTTGTTGCCTGTAGAAATA
GAAGTGTTTAAGTATCATAGTGTATGTCCACCTCTTATTTCCGCTGGATC
CAAGATATTAAACCTTGTACCGTGTAGAGCTTTGGAATCGAGTAGTCTTG
GGTCGACTGAATGCTTGGAGAAAGACGCCACCTGATAGGCGATAGCAATA
GGTGATAGCAATAGACGATAACAGTAGGCGATAGCAGCTACTGCCTTGCG
ACTGGCGCTTGTTCACACCCCAGACAACCCCCCCCTAAAACGCTTGTCTC
CGTTACCTACAAACCAGGGACTCACCACGTTCATTGGTGTTCCAAGCGAG
ATTCCCCTCGTGGACGTCGCCGACTGCTTATTTTACCACAGTAGACCACG
GCATATCGCCCCGCTTCCCTGCCGAGGCCCGACGGCTGAAGCGAGGATGG
CAGAGGATTGCAGCGCCAGTCCTGGACGCGCGTTCTCTCGAAGTCGACCA
GGAGGCAGCTCGGCCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig927:122439..123156+

>mRNA_F-serratus_M_contig927.20658.1 ID=mRNA_F-serratus_M_contig927.20658.1|Name=mRNA_F-serratus_M_contig927.20658.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig927:122439..123156+ (Fucus serratus male)
ATGTCGACGGTCGAGAGCTCGAGCGAGCGCATGCGGATGTCGACGGTCGA
GAGCTCGAGCGAGCGCATGCGGGGACTCACCACGTTCATTGGTGTTCCAA
GCGAGATTCCCCTCGTGGACGTCGCCGACTGCTTATTTTACCACAGTAGA
CCACGGCATATCGCCCCGCTTCCCTGCCGAGGCCCGACGGCTGAAGCGAG
GATGGCAGAGGATTGCAGCGCCAGTCCTGGACGCGCGTTCTCTCGAAGTC
GACCAGGAGGCAGCTCGGCCGGCGGACTCACCACGTTCATTGGTGTTCCA
AGCGAGATTCCCCTCGTGGACGTCGCCGACTGCTTATTTTACCACAGTAG
ACCACGGCATATCGCCCCGCTTCCCTGCCGAGGCCCGACGGCTGAAGCGA
GGATGGCAGAGGATTGCAGCGCCAGTCCTGGACGCGCGTTCTCTCGAAGT
CGACCAGGAGGCAGCTCGGCCGGC
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