mRNA_F-serratus_M_contig926.20648.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig926.20648.1
Unique NamemRNA_F-serratus_M_contig926.20648.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig926.20648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig926contigF-serratus_M_contig926:185238..186666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1318
Cds size1002
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig926.20648.1prot_F-serratus_M_contig926.20648.1Fucus serratus malepolypeptideF-serratus_M_contig926 185554..186666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932674.7913244-UTR-F-serratus_M_contig926:185237..1855531622932674.7913244-UTR-F-serratus_M_contig926:185237..185553Fucus serratus maleUTRF-serratus_M_contig926 185238..185553 +
1690964416.5047116-UTR-F-serratus_M_contig926:185237..1855531690964416.5047116-UTR-F-serratus_M_contig926:185237..185553Fucus serratus maleUTRF-serratus_M_contig926 185238..185553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932674.8061206-CDS-F-serratus_M_contig926:185553..1858151622932674.8061206-CDS-F-serratus_M_contig926:185553..185815Fucus serratus maleCDSF-serratus_M_contig926 185554..185815 +
1690964416.5157864-CDS-F-serratus_M_contig926:185553..1858151690964416.5157864-CDS-F-serratus_M_contig926:185553..185815Fucus serratus maleCDSF-serratus_M_contig926 185554..185815 +
1622932674.8194423-CDS-F-serratus_M_contig926:185926..1866661622932674.8194423-CDS-F-serratus_M_contig926:185926..186666Fucus serratus maleCDSF-serratus_M_contig926 185927..186666 +
1690964416.5267866-CDS-F-serratus_M_contig926:185926..1866661690964416.5267866-CDS-F-serratus_M_contig926:185926..186666Fucus serratus maleCDSF-serratus_M_contig926 185927..186666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig926.20648.1

>prot_F-serratus_M_contig926.20648.1 ID=prot_F-serratus_M_contig926.20648.1|Name=mRNA_F-serratus_M_contig926.20648.1|organism=Fucus serratus male|type=polypeptide|length=334bp
MSHNYSESQRLEALESSVTGIERQMSELIGMMRQYTSRTGSAGQNEKESG
DTGRGVVFKQPSSDTGKVPLPAVTSYCVTAVEAGRKSGGTGRGVACNHSS
GTGSVPLSAVTRYCVTAAEAGRNSGGAGRGATFKSSSVTGRATLPAVTSY
CVTAVELGRKSGGTGRGVACKPGSEDLHECRGCLTSTRFDGRATDSVEEK
SEGSGASLLKEWSQVSDPLREEVFVQSDAKQLPIWSACGLRRRIVGPVWR
GSSGELTEEDRPRAVTRVLHRLQSLTTKEDIATEGVHDLLQELREEEQEP
DCPLATATEENPELSIFHICNQPSEVESPRNYL*
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mRNA from alignment at F-serratus_M_contig926:185238..186666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig926.20648.1 ID=mRNA_F-serratus_M_contig926.20648.1|Name=mRNA_F-serratus_M_contig926.20648.1|organism=Fucus serratus male|type=mRNA|length=1429bp|location=Sequence derived from alignment at F-serratus_M_contig926:185238..186666+ (Fucus serratus male)
GGTTATCCTGCAGATATACGGTTCAACAAAATCTGGACCAATCACGTAGA
GACAGATGGATGGGCGTAATTACGCCGTATTGTTAGAGATAGGTACATTA
CTCCGAAGGTAGATGCCTCTCTCTTTCACTCCTTTTCTACTCCTTTTCTT
CCCCTTTTCCCTTTCCATCTCCTTTCTCCTCTCCATGTTTGGAGCGTCCT
GTAATAAAGTTATTCAACAAGACTCAGCGTTGCACTGTGGAAAGCAGTGA
ACGCCTCGAACCTAGAACCACGAATACATTAGTGCTATCCTTCAGTAAGG
AGGTTTTGGTTTGAGCATGAGTCACAACTACAGTGAATCGCAAAGGCTTG
AGGCGCTGGAATCGAGCGTCACAGGAATAGAGAGGCAGATGAGCGAACTG
ATTGGCATGATGCGTCAGTATACCAGCAGGACAGGAAGCGCTGGCCAGAA
CGAGAAGGAGTCAGGCGACACCGGCAGGGGCGTCGTCTTCAAACAACCCA
GCAGCGACACTGGAAAGGTGCCGCTCCCTGCTGTGACAAGCTATTGTGTT
ACGGCAGTCGAAGCTGGACGAAAGTCAGGCGGCACCGGCAGGGGCGTCGC
TTGCAATCACAGCAGCGGCACGGGAAGCGTGCCGCTCTCTGCTGTAACAA
GGTATTGTGTTACAGCAGTCGAAGCTGGACGAAAGTCAGGCGGCACCGGC
AGGGGCGTCGCCTGCAATCACAGCAGCGGCACGGGAAGCGTGCCGCTCTC
TGCTGTAACAAGGTATTGTGTTACAGCAGCCGAAGCTGGGAGAAATTCAG
GCGGCGCCGGTAGGGGCGCCACCTTCAAATCCAGCAGCGTCACCGGAAGG
GCGACGCTCCCTGCTGTAACAAGCTATTGTGTTACAGCAGTCGAACTTGG
AAGAAAGTCGGGCGGCACCGGAAGGGGCGTCGCCTGCAAGCCCGGCAGCG
AGGACCTTCACGAGTGCCGGGGGTGTCTGACTTCAACCCGATTTGATGGA
AGAGCTACGGATTCTGTCGAAGAAAAAAGCGAGGGAAGCGGAGCTTCATT
GCTGAAGGAATGGTCACAAGTCAGTGACCCGTTGAGGGAAGAGGTTTTCG
TGCAGAGCGACGCCAAGCAGCTGCCGATATGGAGCGCCTGCGGGCTGAGA
CGGAGAATCGTCGGGCCAGTATGGAGAGGCTCCAGCGGAGAATTGACCGA
GGAAGATCGTCCGCGAGCAGTGACAAGAGTACTGCATCGACTTCAGTCAT
TGACCACGAAAGAAGACATTGCCACCGAAGGAGTCCACGACTTGCTGCAG
GAGCTGCGCGAGGAGGAGCAGGAACCAGACTGCCCTCTCGCAACGGCGAC
CGAAGAAAACCCTGAGCTAAGTATTTTTCACATCTGTAACCAACCCAGCG
AAGTAGAGTCGCCCCGAAACTATCTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig926:185238..186666+

>mRNA_F-serratus_M_contig926.20648.1 ID=mRNA_F-serratus_M_contig926.20648.1|Name=mRNA_F-serratus_M_contig926.20648.1|organism=Fucus serratus male|type=CDS|length=2004bp|location=Sequence derived from alignment at F-serratus_M_contig926:185238..186666+ (Fucus serratus male)
ATGAGTCACAACTACAGTGAATCGCAAAGGCTTGAGGCGCTGGAATCGAG
CGTCACAGGAATAGAGAGGCAGATGAGCGAACTGATTGGCATGATGCGTC
AGTATACCAGCAGGACAGGAAGCGCTGGCCAGAACGAGAAGGAGTCAGGC
GACACCGGCAGGGGCGTCGTCTTCAAACAACCCAGCAGCGACACTGGAAA
GGTGCCGCTCCCTGCTGTGACAAGCTATTGTGTTACGGCAGTCGAAGCTG
GACGAAAGTCAGATGAGTCACAACTACAGTGAATCGCAAAGGCTTGAGGC
GCTGGAATCGAGCGTCACAGGAATAGAGAGGCAGATGAGCGAACTGATTG
GCATGATGCGTCAGTATACCAGCAGGACAGGAAGCGCTGGCCAGAACGAG
AAGGAGTCAGGCGACACCGGCAGGGGCGTCGTCTTCAAACAACCCAGCAG
CGACACTGGAAAGGTGCCGCTCCCTGCTGTGACAAGCTATTGTGTTACGG
CAGTCGAAGCTGGACGAAAGTCAGGCGGCACCGGCAGGGGCGTCGCCTGC
AATCACAGCAGCGGCACGGGAAGCGTGCCGCTCTCTGCTGTAACAAGGTA
TTGTGTTACAGCAGCCGAAGCTGGGAGAAATTCAGGCGGCGCCGGTAGGG
GCGCCACCTTCAAATCCAGCAGCGTCACCGGAAGGGCGACGCTCCCTGCT
GTAACAAGCTATTGTGTTACAGCAGTCGAACTTGGAAGAAAGTCGGGCGG
CACCGGAAGGGGCGTCGCCTGCAAGCCCGGCAGCGAGGACCTTCACGAGT
GCCGGGGGTGTCTGACTTCAACCCGATTTGATGGAAGAGCTACGGATTCT
GTCGAAGAAAAAAGCGAGGGAAGCGGAGCTTCATTGCTGAAGGAATGGTC
ACAAGTCAGTGACCCGTTGAGGGAAGAGGTTTTCGTGCAGAGCGACGCCA
AGCAGCTGCCGATATGGAGCGCCTGCGGGCTGAGACGGAGAATCGTCGGG
CCAGTATGGAGAGGCTCCAGCGGAGAATTGACCGAGGAAGATCGTCCGCG
AGCAGTGACAAGAGTACTGCATCGACTTCAGTCATTGACCACGAAAGAAG
ACATTGCCACCGAAGGAGTCCACGACTTGCTGCAGGAGCTGCGCGAGGAG
GAGCAGGAACCAGACTGCCCTCTCGCAACGGCGACCGAAGAAAACCCTGA
GCTAAGTATTTTTCACATCTGTAACCAACCCAGCGAAGTAGAGTCGCCCC
GAAACTATCTGTAGGCGGCACCGGCAGGGGCGTCGCCTGCAATCACAGCA
GCGGCACGGGAAGCGTGCCGCTCTCTGCTGTAACAAGGTATTGTGTTACA
GCAGCCGAAGCTGGGAGAAATTCAGGCGGCGCCGGTAGGGGCGCCACCTT
CAAATCCAGCAGCGTCACCGGAAGGGCGACGCTCCCTGCTGTAACAAGCT
ATTGTGTTACAGCAGTCGAACTTGGAAGAAAGTCGGGCGGCACCGGAAGG
GGCGTCGCCTGCAAGCCCGGCAGCGAGGACCTTCACGAGTGCCGGGGGTG
TCTGACTTCAACCCGATTTGATGGAAGAGCTACGGATTCTGTCGAAGAAA
AAAGCGAGGGAAGCGGAGCTTCATTGCTGAAGGAATGGTCACAAGTCAGT
GACCCGTTGAGGGAAGAGGTTTTCGTGCAGAGCGACGCCAAGCAGCTGCC
GATATGGAGCGCCTGCGGGCTGAGACGGAGAATCGTCGGGCCAGTATGGA
GAGGCTCCAGCGGAGAATTGACCGAGGAAGATCGTCCGCGAGCAGTGACA
AGAGTACTGCATCGACTTCAGTCATTGACCACGAAAGAAGACATTGCCAC
CGAAGGAGTCCACGACTTGCTGCAGGAGCTGCGCGAGGAGGAGCAGGAAC
CAGACTGCCCTCTCGCAACGGCGACCGAAGAAAACCCTGAGCTAAGTATT
TTTCACATCTGTAACCAACCCAGCGAAGTAGAGTCGCCCCGAAACTATCT
GTAG
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