mRNA_F-serratus_M_contig923.20637.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig923.20637.1
Unique NamemRNA_F-serratus_M_contig923.20637.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig923.20637.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.250e-20
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    1 VRRLASNLEALQDNAAAFGWQRTGLAGSWKLMFSTCTAEGKCEKKS-DRLESIEEISYVSENLRLSHT-DSGVLRVYKRVS 237
            VRRLA+ LE+LQDNAA FG Q++GL GSWKL++S+   EG    +  DRL +IE+ISYVSEN RLSH+ +   LRVYKRVS
Sbjct:   13 VRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVS 93
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BLAST of mRNA_F-serratus_M_contig923.20637.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.320e-19
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    1 VRRLASNLEALQDNAAAFGWQRTGLAGSWKLMFSTCTAEGKCEKKS-DRLESIEEISYVSENLRLSHT-DSGVLRVYKRVS 237
            VRRLA+ LE+LQDNAA FG Q++GL GSWKL++S    EGK   +  DRL +IE ISYVSEN RLSH+ +   LRVYKRVS
Sbjct:  126 VRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVS 206
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig923.20637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W5_ECTSI1.250e-2061.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ0_9PHAE1.320e-1962.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig923contigF-serratus_M_contig923:294787..296869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932673.2569096-CDS-F-serratus_M_contig923:294786..2951051622932673.2569096-CDS-F-serratus_M_contig923:294786..295105Fucus serratus maleCDSF-serratus_M_contig923 294787..295105 -
1690964415.7775016-CDS-F-serratus_M_contig923:294786..2951051690964415.7775016-CDS-F-serratus_M_contig923:294786..295105Fucus serratus maleCDSF-serratus_M_contig923 294787..295105 -
1622932673.2760732-CDS-F-serratus_M_contig923:296786..2968691622932673.2760732-CDS-F-serratus_M_contig923:296786..296869Fucus serratus maleCDSF-serratus_M_contig923 296787..296869 -
1690964415.787718-CDS-F-serratus_M_contig923:296786..2968691690964415.787718-CDS-F-serratus_M_contig923:296786..296869Fucus serratus maleCDSF-serratus_M_contig923 296787..296869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig923.20637.1prot_F-serratus_M_contig923.20637.1Fucus serratus malepolypeptideF-serratus_M_contig923 294787..296869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig923.20637.1

>prot_F-serratus_M_contig923.20637.1 ID=prot_F-serratus_M_contig923.20637.1|Name=mRNA_F-serratus_M_contig923.20637.1|organism=Fucus serratus male|type=polypeptide|length=134bp
VRRLASNLEALQDNAAAFGWQRTGLAGSWKLMFSTCTAEGKCEKKSDRLE
SIEEISYVSENLRLSHTDSGVLRVYKRVSGGVGKGKEDDTAQGSRISSGT
GKSKAGRASATAAGRSASKQPLRKRMFFGFLRR*
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mRNA from alignment at F-serratus_M_contig923:294787..296869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig923.20637.1 ID=mRNA_F-serratus_M_contig923.20637.1|Name=mRNA_F-serratus_M_contig923.20637.1|organism=Fucus serratus male|type=mRNA|length=2083bp|location=Sequence derived from alignment at F-serratus_M_contig923:294787..296869- (Fucus serratus male)
GTTCGTCGACTGGCGTCCAATCTGGAAGCGCTTCAAGACAACGCCGCCGC
GTTCGGGTGGCAGAGGACAGGCTTGGCGGGCAGGTGCTTGGGGTTGTTGT
GAACTGTTGGGTTGTCGCTTGTGTTTGTGGATGAGCTTCCTCGATCACCC
CCCCGCCCTCCGCATTTGGCCTACTTCTGTGCGTATATGGGTGAAAGCGA
CAGCTCGTGCAACGATGACCCACGAGGACCGTTATTGGTAACTTTCACTA
GCAGCCACATTAGTCCAGATAGATTTTCAACCTATATCAATAGGTATATA
TATGATATATCTATATGTATATATATATAGATATAGATATATCTATATAT
ATATACAAAAAATATATATATATAGAGAGAATATATATATATATACTTCG
TATATATGCATCACCAGTACCGTAGTTTTTAAGGGAAGCAGGCCGTGAAG
CAAGGGGTTACATTCTACAGTTGTTTCCTTGTGTGTAGCACAAAATTGAC
TTTTCCGTGGGTTTTTACTTTTTCGTGGATATATATAGCTTGTTTGTTGG
GGTTGCGAGGGAGTGAATGGGACTCTTAAAAAAAACAAAAGACTCTCATT
ATGGGAGTGCAGTTTGATATGTAATATGTAGAACATAATGCGTCACCTGC
GTTTCCCTGTGGTAGAGGGAGTGTGGTTTGATATGTAATATGTAGAACAC
AATGCGTCACTTACGCTTTCCTGTCGTAGAGGTACGCGTGACGTGATTTG
ATATGTAATATGTAGAACATAATGCGTCACTTACGCTTTCCTGTCGTAGA
GGTACGTGTGGTATTACGTGTTGGGTTGCGAGAAATACGTGGAAACTCGG
GCAAAAAATATGTGACTTGATTCTCGAGACAGGCAATATACAGTACACTA
CTTGTAGAGAGAAGGCTGTATGTGTTTTTGTGGTTATTTGTATCTCACTT
CAAGGCCGATAGGCCTCAACATGCTAGGTTGCCAATCCCAACCACTGCAG
TTTTGCCATCCTGCCTGTGGTCACAAAGGATCTTCCCGTCTCTCCCCGGT
TATGCTTTTGTATCGCGATGCAATTACAGCACGCTTAAAACTCGCTAACC
AAAGGTTGAAATTTAGTTACACTTGCGTTCTCACGCTTTTCGCGACGGAA
GCCAGAAAACAAATTCTGGTTTTCACAAGAATCGAACTCACGACTTCAAC
ACTAGGTGTACGTGGTTAGGTTACCTACTAATAATAGACCACTCGGGCGA
TCGATGAGTATGTGTATATGTAAAAGGGTATCTAGTATTATTAATAGTAC
TATTAGAGTACATTATTGAAGTTGAAGAAGAGGCGAGATTTCGGACCCCT
CGACCATTTTTTTGGAGCCGAGTACCATGATGCATACACGACAGAGTCTA
TATAGACCAGTCAGCGCTGATTGGTCAAAGTTCTCTACAGGTTGTAGTGC
CTTGTTTTGAAGAAAATTATCTGAAAATTATGAGCGCATCTTTTTCGGGG
GATCTATTTTCCCCAAAAGTCAGACGAAATTTAACATCGCGATACCCACC
CGCAAAAAAATGTTCGGAGAAAGCTCTGATATGAAAACAAAAAGAACATA
TTCCCTTGCAGAATAGTGTTTGCCCCTGCTGTGCCCTGCACTCACGATGT
AAACAAAATACAGCATAAAACTTGCGGTCGGTGCTTTCAATATCTTGTAA
AAATTCCCTTCATACCCCCCCCCCATTCCCCTATACCCTGTACCCGTTCC
CTGCCCGTGCGCAGCTGGAAGCTCATGTTCTCGACCTGCACGGCGGAAGG
TAAGTGCGAGAAAAAGTCGGACCGCCTCGAGTCTATCGAGGAGATCTCGT
ACGTCTCGGAGAACTTGCGCCTGTCGCACACGGACTCCGGCGTCCTCCGC
GTGTACAAGCGTGTTTCCGGCGGCGTGGGGAAAGGGAAGGAGGATGACAC
AGCGCAAGGCAGCAGGATCTCGAGCGGCACGGGCAAGTCGAAGGCCGGGC
GCGCTTCGGCTACGGCGGCGGGGCGTTCGGCCAGCAAGCAGCCGCTCCGC
AAGCGCATGTTTTTTGGCTTCTTGAGGCGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig923:294787..296869-

>mRNA_F-serratus_M_contig923.20637.1 ID=mRNA_F-serratus_M_contig923.20637.1|Name=mRNA_F-serratus_M_contig923.20637.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig923:294787..296869- (Fucus serratus male)
GTTCGTCGACTGGCGTCCAATCTGGAAGCGCTTCAAGACAACGCCGCCGC
GTTCGGGTGGCAGAGGACAGGCTTGGCGGGCAGGTTCGTCGACTGGCGTC
CAATCTGGAAGCGCTTCAAGACAACGCCGCCGCGTTCGGGTGGCAGAGGA
CAGGCTTGGCGGGCAGCTGGAAGCTCATGTTCTCGACCTGCACGGCGGAA
GGTAAGTGCGAGAAAAAGTCGGACCGCCTCGAGTCTATCGAGGAGATCTC
GTACGTCTCGGAGAACTTGCGCCTGTCGCACACGGACTCCGGCGTCCTCC
GCGTGTACAAGCGTGTTTCCGGCGGCGTGGGGAAAGGGAAGGAGGATGAC
ACAGCGCAAGGCAGCAGGATCTCGAGCGGCACGGGCAAGTCGAAGGCCGG
GCGCGCTTCGGCTACGGCGGCGGGGCGTTCGGCCAGCAAGCAGCCGCTCC
GCAAGCGCATGTTTTTTGGCTTCTTGAGGCGCTGACTGGAAGCTCATGTT
CTCGACCTGCACGGCGGAAGGTAAGTGCGAGAAAAAGTCGGACCGCCTCG
AGTCTATCGAGGAGATCTCGTACGTCTCGGAGAACTTGCGCCTGTCGCAC
ACGGACTCCGGCGTCCTCCGCGTGTACAAGCGTGTTTCCGGCGGCGTGGG
GAAAGGGAAGGAGGATGACACAGCGCAAGGCAGCAGGATCTCGAGCGGCA
CGGGCAAGTCGAAGGCCGGGCGCGCTTCGGCTACGGCGGCGGGGCGTTCG
GCCAGCAAGCAGCCGCTCCGCAAGCGCATGTTTTTTGGCTTCTTGAGGCG
CTGA
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