mRNA_F-serratus_M_contig923.20636.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig923.20636.1
Unique NamemRNA_F-serratus_M_contig923.20636.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig923.20636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig923contigF-serratus_M_contig923:230872..231741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.7033272-CDS-F-serratus_M_contig923:230873..2310321622932672.7033272-CDS-F-serratus_M_contig923:230873..231032Fucus serratus maleCDSF-serratus_M_contig923 230874..231032 -
1690964415.5818152-CDS-F-serratus_M_contig923:230873..2310321690964415.5818152-CDS-F-serratus_M_contig923:230873..231032Fucus serratus maleCDSF-serratus_M_contig923 230874..231032 -
1622932672.7220461-CDS-F-serratus_M_contig923:231558..2317411622932672.7220461-CDS-F-serratus_M_contig923:231558..231741Fucus serratus maleCDSF-serratus_M_contig923 231559..231741 -
1690964415.5915732-CDS-F-serratus_M_contig923:231558..2317411690964415.5915732-CDS-F-serratus_M_contig923:231558..231741Fucus serratus maleCDSF-serratus_M_contig923 231559..231741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig923.20636.1prot_F-serratus_M_contig923.20636.1Fucus serratus malepolypeptideF-serratus_M_contig923 230874..231741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig923.20636.1

>prot_F-serratus_M_contig923.20636.1 ID=prot_F-serratus_M_contig923.20636.1|Name=mRNA_F-serratus_M_contig923.20636.1|organism=Fucus serratus male|type=polypeptide|length=114bp
LEVDGEDDFHRHQVEYDDDDDDDDDVVFFDLESSKDVGHSAHACVWEGLA
AGIKVELEEEKARVFDLTTENRRLRRKKAADRTEQCACQKEQNHREQLEQ
QQQQQQQGSWQQWW
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mRNA from alignment at F-serratus_M_contig923:230872..231741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig923.20636.1 ID=mRNA_F-serratus_M_contig923.20636.1|Name=mRNA_F-serratus_M_contig923.20636.1|organism=Fucus serratus male|type=mRNA|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig923:230872..231741- (Fucus serratus male)
TTGGAGGTGGATGGCGAGGATGACTTCCACCGGCACCAGGTAGAATACGA
TGACGATGATGACGATGACGACGATGTAGTTTTCTTCGATTTGGAGAGCA
GCAAGGACGTCGGGCATTCAGCGCATGCTTGCGTCTGGGAAGGCTTGGCG
GCTGGGATAAAGGTGGAGCTCGAGGAGGAAAAGGTAGGCGTTGCGTACGA
CGTGCGCGGTTTTTGCGTTCGTACGATATCGAACGCACCCGTCGTTTGTA
CCCTTTTTCTTTTTTGGCTTTGGCGCGGGCGTCAGTGTCCATCCATTCCG
CGTCTATGAGGTCCGTGGTACTTGCGTTCAGTAAGATACGCGTCTTGTTT
CGGAGAATGAAAGAAGCATAGCTGTAAGAGTGGCATATCGAGATACGAGA
AGGGCGAGAAAACGGATCAATTTACCCGTGAGACGATGATGCTGTAGCCC
TCAGATACTTGTTGTTTGCCCTTTCATGCAGCGCGGCAAGAAGAAAGGAA
ACTCAACCCAACTTACTTTCAACGACGTAGTTGTTCCAAAGATTGGTCGG
GAGCCCAATATTCTGGAGAATATGAGGACGACCAACCACAGCAACGCACC
CACATCTTTTCCGATAACGCCTCGTGTCTCTAATGAAGATATGTCATTAT
TAATAGTATTAATTAATTGCCTGTACTGTCATTGATACACGTCTTTTCGC
CACCCGAAGGCTCGCGTTTTTGACCTCACCACCGAGAATCGGCGCCTGCG
GAGAAAAAAAGCGGCCGATCGGACTGAACAGTGCGCCTGCCAGAAGGAGC
AAAACCACCGCGAACAGCTTGAGCAGCAGCAGCAGCAGCAGCAGCAAGGG
TCGTGGCAGCAGTGGTGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig923:230872..231741-

>mRNA_F-serratus_M_contig923.20636.1 ID=mRNA_F-serratus_M_contig923.20636.1|Name=mRNA_F-serratus_M_contig923.20636.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig923:230872..231741- (Fucus serratus male)
TTGGAGGTGGATGGCGAGGATGACTTCCACCGGCACCAGGTAGAATACGA
TGACGATGATGACGATGACGACGATGTAGTTTTCTTCGATTTGGAGAGCA
GCAAGGACGTCGGGCATTCAGCGCATGCTTGCGTCTGGGAAGGCTTGGCG
GCTGGGATAAAGGTGGAGCTCGAGGAGGAAAAGTTGGAGGTGGATGGCGA
GGATGACTTCCACCGGCACCAGGTAGAATACGATGACGATGATGACGATG
ACGACGATGTAGTTTTCTTCGATTTGGAGAGCAGCAAGGACGTCGGGCAT
TCAGCGCATGCTTGCGTCTGGGAAGGCTTGGCGGCTGGGATAAAGGTGGA
GCTCGAGGAGGAAAAGGCTCGCGTTTTTGACCTCACCACCGAGAATCGGC
GCCTGCGGAGAAAAAAAGCGGCCGATCGGACTGAACAGTGCGCCTGCCAG
AAGGAGCAAAACCACCGCGAACAGCTTGAGCAGCAGCAGCAGCAGCAGCA
GCAAGGGTCGTGGCAGCAGTGGTGGGCTCGCGTTTTTGACCTCACCACCG
AGAATCGGCGCCTGCGGAGAAAAAAAGCGGCCGATCGGACTGAACAGTGC
GCCTGCCAGAAGGAGCAAAACCACCGCGAACAGCTTGAGCAGCAGCAGCA
GCAGCAGCAGCAAGGGTCGTGGCAGCAGTGGTGG
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