mRNA_F-serratus_M_contig923.20635.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig923.20635.1
Unique NamemRNA_F-serratus_M_contig923.20635.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig923.20635.1 vs. uniprot
Match: D7G1W1_ECTSI (Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.430e-8
Identity = 39/104 (37.50%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:    1 EKKLESLIDLGNDRFRVLKYETAAAIPFPMTKSIYAWLDLGNLPEEVSKALMNVSTEAAVPPRSGHA-AEKERRATSARFDWVTRWAVEMPDFRRHQIQRACKP 309
            E KL+ L  LG  RFRVLK+E                         V++A+ + S  ++     G A A    ++T   FDW TRWAVEMP FRR Q+Q AC P
Sbjct:  382 ENKLKFLTLLGKQRFRVLKHEM------------------------VTEAIRSTSMRSSAENSPGTAVAGNGSKSTMGGFDWATRWAVEMPTFRRQQVQLACHP 461
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig923.20635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W1_ECTSI2.430e-837.50Carbohydrate (N-acetylglucosamine 6-O) sulfotransf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig923contigF-serratus_M_contig923:141835..143353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size313
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig923.20635.1prot_F-serratus_M_contig923.20635.1Fucus serratus malepolypeptideF-serratus_M_contig923 141835..143351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932673.0968676-CDS-F-serratus_M_contig923:141834..1419001622932673.0968676-CDS-F-serratus_M_contig923:141834..141900Fucus serratus maleCDSF-serratus_M_contig923 141835..141900 +
1690964415.7349653-CDS-F-serratus_M_contig923:141834..1419001690964415.7349653-CDS-F-serratus_M_contig923:141834..141900Fucus serratus maleCDSF-serratus_M_contig923 141835..141900 +
1622932673.1173024-CDS-F-serratus_M_contig923:142214..1422861622932673.1173024-CDS-F-serratus_M_contig923:142214..142286Fucus serratus maleCDSF-serratus_M_contig923 142215..142286 +
1690964415.748145-CDS-F-serratus_M_contig923:142214..1422861690964415.748145-CDS-F-serratus_M_contig923:142214..142286Fucus serratus maleCDSF-serratus_M_contig923 142215..142286 +
1622932673.1330307-CDS-F-serratus_M_contig923:142802..1429061622932673.1330307-CDS-F-serratus_M_contig923:142802..142906Fucus serratus maleCDSF-serratus_M_contig923 142803..142906 +
1690964415.7580452-CDS-F-serratus_M_contig923:142802..1429061690964415.7580452-CDS-F-serratus_M_contig923:142802..142906Fucus serratus maleCDSF-serratus_M_contig923 142803..142906 +
1622932673.1565096-CDS-F-serratus_M_contig923:143284..1433511622932673.1565096-CDS-F-serratus_M_contig923:143284..143351Fucus serratus maleCDSF-serratus_M_contig923 143285..143351 +
1690964415.7673042-CDS-F-serratus_M_contig923:143284..1433511690964415.7673042-CDS-F-serratus_M_contig923:143284..143351Fucus serratus maleCDSF-serratus_M_contig923 143285..143351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig923.20635.1

>prot_F-serratus_M_contig923.20635.1 ID=prot_F-serratus_M_contig923.20635.1|Name=mRNA_F-serratus_M_contig923.20635.1|organism=Fucus serratus male|type=polypeptide|length=103bp
EKKLESLIDLGNDRFRVLKYETAAAIPFPMTKSIYAWLDLGNLPEEVSKA
LMNVSTEAAVPPRSGHAAEKERRATSARFDWVTRWAVEMPDFRRHQIQRA
CKP
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mRNA from alignment at F-serratus_M_contig923:141835..143353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig923.20635.1 ID=mRNA_F-serratus_M_contig923.20635.1|Name=mRNA_F-serratus_M_contig923.20635.1|organism=Fucus serratus male|type=mRNA|length=1519bp|location=Sequence derived from alignment at F-serratus_M_contig923:141835..143353+ (Fucus serratus male)
GAGAAAAAGCTGGAAAGTCTGATCGACCTTGGAAATGACCGTTTCAGGGT
GCTCAAGTACGAGACGGTGAGAGTTTGGCCGCAACGAGGGTGACGGCGGA
TGATGTGTTGGTACGTGCTGGTGATGAGACGCATAGCACCGACAACCTAA
GCCTTTGAATTGATTGACTGAATTCTCCCATAAGCTGAGGTCAAAAGTCC
AGCTGCTCGTGGTCACAAGGTAGAAAAACGCCATCCGGAAGGAAAAAACG
TACGACGCACTCTCCATGCAGAGGGGAAAATGGTTAATGGTTACAAAAAT
ACTCGGAAAAGGCGACAATTCCAAAATAACGTGGAGTATATAATCAGTTT
CCCCTGTTTTATCTTATATCTTCCCCCAAGGCCGCAGCAATCCCCTTCCC
GATGACGAAGAGTATCTACGCATGGTTGGACCTCGGGAATCTTCCCGAAG
AGGTGCGCCGCTTTCCCCTCACGAAAACCTTGGCTGAGAGATAGGGGAGG
GGGGTGGAGGTTGTTCCGAGCCTGAACTCAAAATACTTGCGAAAGTTCCA
TAGCTTCTGGAATACAGCGATACTTGCCTCTCAAAAGAAGTCTGCCGCTG
TTGCAATGGGCCTCTCTGATGAAAAACGGCAACATTGTGTAGCATGTACA
TAACGCCATGGTTGAGTGCACGTTCAAAGCAGTGTGAACGTTCGTGGAGG
GATACTGTGAAGTTTTGGCATCTTTTTTGTCTGCTGATGGCCATAAGTCC
ACCTTCATTTCTGCTTTTGCTTGTTCCCCTTGCGGACGGCACTTTCACGC
TCTCCAAGACTACCGAGGCGTTCTTCTTCCACAGCGTGTGAAGGAGTGTG
TGTATAAGGAAGGGGCCGGTGGGTTGGTAGGTGGGATGTATGGATCCGTT
GTATGTCTCCGTCCACCAACGTTGTTCCTGCCCGCTTTTCTATCCCGCCG
GGTTTTCTGTCCCTTCAGGTTTCGAAGGCGCTTATGAATGTTTCAACCGA
AGCCGCCGTTCCTCCACGATCGGGGCATGCAGCAGAGAAAGAACGCCGGG
CAACGTCGGCCCGGTTCGATTGGTAAGAAGCCAGCTTTTTGCAGAGATGA
TCAGAAAATCCAGTTGACCCGCAAAGAACTGAGAGCGGGATTTGGAAGAT
CAGCCCTCCCCCAGAAATCCCTGTGGCCCCGCCCAAGGGCTTTCGGGAGT
TGAGCATCTTGTGACGTCATCATGTGCCATTTCTTCCCGTCGCGTCCTTC
AATTAGAGTTTCGATCTGCGGATCTTTTGATCGTCTTTAATGCGGAACAA
CTGTTTCCTACAGAATATATGTCCCCCCCCTCCCACCCTACATCCCGTTG
ACCGGCGATGACTAAGTAACCGCGGCGCCACTCTCCCCCCCCTCGTTCAT
ACTCGCATCCCACTTATTTTCACGTATTATTTATCTGAATGATTACGAAG
GGTAACTCGCTGGGCTGTCGAGATGCCTGACTTCCGGCGTCACCAGATCC
AACGCGCCTGCAAGCCATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig923:141835..143353+

>mRNA_F-serratus_M_contig923.20635.1 ID=mRNA_F-serratus_M_contig923.20635.1|Name=mRNA_F-serratus_M_contig923.20635.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig923:141835..143353+ (Fucus serratus male)
GAGAAAAAGCTGGAAAGTCTGATCGACCTTGGAAATGACCGTTTCAGGGT
GCTCAAGTACGAGACGGAGAAAAAGCTGGAAAGTCTGATCGACCTTGGAA
ATGACCGTTTCAGGGTGCTCAAGTACGAGACGGCCGCAGCAATCCCCTTC
CCGATGACGAAGAGTATCTACGCATGGTTGGACCTCGGGAATCTTCCCGA
AGAGGCCGCAGCAATCCCCTTCCCGATGACGAAGAGTATCTACGCATGGT
TGGACCTCGGGAATCTTCCCGAAGAGGTTTCGAAGGCGCTTATGAATGTT
TCAACCGAAGCCGCCGTTCCTCCACGATCGGGGCATGCAGCAGAGAAAGA
ACGCCGGGCAACGTCGGCCCGGTTCGATTGGTTTCGAAGGCGCTTATGAA
TGTTTCAACCGAAGCCGCCGTTCCTCCACGATCGGGGCATGCAGCAGAGA
AAGAACGCCGGGCAACGTCGGCCCGGTTCGATTGGGTAACTCGCTGGGCT
GTCGAGATGCCTGACTTCCGGCGTCACCAGATCCAACGCGCCTGCAAGCC
AGGTAACTCGCTGGGCTGTCGAGATGCCTGACTTCCGGCGTCACCAGATC
CAACGCGCCTGCAAGCCA
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