mRNA_F-serratus_M_contig923.20632.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig923.20632.1
Unique NamemRNA_F-serratus_M_contig923.20632.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig923.20632.1 vs. uniprot
Match: D7G1W1_ECTSI (Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.230e-18
Identity = 39/79 (49.37%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:    3 VVPRVLMPELSVKFLVLVRDPRAALHGLSQSWERSTNELDRAMSKNCTQLAATICSSTEKKLESMINLGNDRFRVLKYE 239
            V PR+  PEL ++FL +VRDPRAA+HG+++ WE+S N+++R+M+++C+ +A+ +C+S E KL+ +  LG  RFRVLK+E
Sbjct:  324 VAPRLSTPELDLEFLHIVRDPRAAIHGMAELWEKSDNKMERSMARDCSDVASRLCTSAENKLKFLTLLGKQRFRVLKHE 402
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig923.20632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W1_ECTSI5.230e-1849.37Carbohydrate (N-acetylglucosamine 6-O) sulfotransf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig923contigF-serratus_M_contig923:127228..128510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size545
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig923.20632.1prot_F-serratus_M_contig923.20632.1Fucus serratus malepolypeptideF-serratus_M_contig923 127408..128490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.8440487-UTR-F-serratus_M_contig923:127227..1274071622932672.8440487-UTR-F-serratus_M_contig923:127227..127407Fucus serratus maleUTRF-serratus_M_contig923 127228..127407 -
1690964415.6132693-UTR-F-serratus_M_contig923:127227..1274071690964415.6132693-UTR-F-serratus_M_contig923:127227..127407Fucus serratus maleUTRF-serratus_M_contig923 127228..127407 -
1622932672.92472-UTR-F-serratus_M_contig923:128490..1285101622932672.92472-UTR-F-serratus_M_contig923:128490..128510Fucus serratus maleUTRF-serratus_M_contig923 128491..128510 -
1690964415.6527348-UTR-F-serratus_M_contig923:128490..1285101690964415.6527348-UTR-F-serratus_M_contig923:128490..128510Fucus serratus maleUTRF-serratus_M_contig923 128491..128510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.8692548-CDS-F-serratus_M_contig923:127407..1275301622932672.8692548-CDS-F-serratus_M_contig923:127407..127530Fucus serratus maleCDSF-serratus_M_contig923 127408..127530 -
1690964415.6233358-CDS-F-serratus_M_contig923:127407..1275301690964415.6233358-CDS-F-serratus_M_contig923:127407..127530Fucus serratus maleCDSF-serratus_M_contig923 127408..127530 -
1622932672.8900104-CDS-F-serratus_M_contig923:127938..1280201622932672.8900104-CDS-F-serratus_M_contig923:127938..128020Fucus serratus maleCDSF-serratus_M_contig923 127939..128020 -
1690964415.632965-CDS-F-serratus_M_contig923:127938..1280201690964415.632965-CDS-F-serratus_M_contig923:127938..128020Fucus serratus maleCDSF-serratus_M_contig923 127939..128020 -
1622932672.906069-CDS-F-serratus_M_contig923:128350..1284901622932672.906069-CDS-F-serratus_M_contig923:128350..128490Fucus serratus maleCDSF-serratus_M_contig923 128351..128490 -
1690964415.6426907-CDS-F-serratus_M_contig923:128350..1284901690964415.6426907-CDS-F-serratus_M_contig923:128350..128490Fucus serratus maleCDSF-serratus_M_contig923 128351..128490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig923.20632.1

>prot_F-serratus_M_contig923.20632.1 ID=prot_F-serratus_M_contig923.20632.1|Name=mRNA_F-serratus_M_contig923.20632.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MPELSVKFLVLVRDPRAALHGLSQSWERSTNELDRAMSKNCTQLAATICS
STEKKLESMINLGNDRFRVLKYETAAATPFPMTESIYAWLDLGNLPEEVR
RFTLRPVQRLGGGM*
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mRNA from alignment at F-serratus_M_contig923:127228..128510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig923.20632.1 ID=mRNA_F-serratus_M_contig923.20632.1|Name=mRNA_F-serratus_M_contig923.20632.1|organism=Fucus serratus male|type=mRNA|length=1283bp|location=Sequence derived from alignment at F-serratus_M_contig923:127228..128510- (Fucus serratus male)
AGGTGGTGCCTAGGGTGTTGATGCCTGAGCTCAGCGTTAAGTTTTTGGTC
CTCGTCCGCGACCCACGGGCTGCACTCCACGGGCTTTCCCAGTCTTGGGA
ACGATCGACGAACGAGCTAGACCGCGCCATGTCCAAGAACTGCACCCAAC
TTGCCGCCACGTAAGAGCTTTGCTCACCCGACAACCGTCCCGCGCGAGGG
CTCGTCAAAGCACGCTGCTCGAGGATCGAACCATTCAAAACGGTAAAAAT
AAACCAGCACACGACGGCGTTTCCTCTGCGTATATTTTTTCGACGCACGG
TTTACGGGTTGGAGGTGCTCTCCCGTCGCAATTAAGTCCAGACGTCGATG
CGTTTTCTACCTTCGCGGGGACTTTTTTTTTCTCGGGGTTCGAGACGGTA
CCTACCCCCCATACCGCCCCCCTTCCTCCCTCACCTCTCCTCGCTTTCCC
CTTCCCGCGGACATTATTTTACTGCTGAACCGAACCGCAGGATATGCTCG
TCTACGGAGAAAAAGCTGGAAAGTATGATCAACCTTGGAAATGACCGTTT
CAGGGTGCTCAAGTACGAGACGGTGAGAGTTTGGCCGCAACGAGGGTGAC
GGCGGATGATGTGTGGTATTCTCGACCAGCGCGGTGCGGTTTCTTCTGCG
CGTATTTTTTGCGTTATTGTCCAAAGCAAGCAGTGAGACACCACTGGTTC
TTCGAGGTACTTGGTACGTGCTGGTGATGAGACCCATAGCACCGGCGACC
TAGGCTTTTGAATTGATTGACTGAATTTACGCACAAGCTGATATCAAAAG
TCCAGCCCGTGGTCACAAGGTAGAAATACGTCATCCGGAAGGGAAAAACG
TACGACGCACTCTCCATACAAAGGGGAAAATGGTTAATGTTAGCAAAAAT
ACTCGGAAAAAGCGACAATTCCAAAGAGACATGTATCATATAACCATTTT
CCCCTGTTTGATCTTATCTCTTCCCCCAAGGCCGCAGCAACCCCTTTCCC
GATGACGGAGAGTATCTACGCATGGTTGGACCTCGGGAACCTTCCCGAAG
AGGTGCGCCGCTTCACCTTAAGACCCGTTCAACGATTGGGGGGGGGGATG
TAAAAAACTTGTCCCCGTTTTGGGAGGTAACGGCACTAAAATAGCCCCTA
CCGGGATAATGTAGTCTCATCCCCGGAAGGGACTGTTTTTTAGGTGACCT
TCCCGGGGACGAAATCGCCGTATCCTCGCCCTCCCCAATCGTTCTATGCA
ATCGTTGAACCTCTCTTACGAAACCCTTGGCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig923:127228..128510-

>mRNA_F-serratus_M_contig923.20632.1 ID=mRNA_F-serratus_M_contig923.20632.1|Name=mRNA_F-serratus_M_contig923.20632.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig923:127228..128510- (Fucus serratus male)
ATGCCTGAGCTCAGCGTTAAGTTTTTGGTCCTCGTCCGCGACCCACGGGC
TGCACTCCACGGGCTTTCCCAGTCTTGGGAACGATCGACGAACGAGCTAG
ACCGCGCCATGTCCAAGAACTGCACCCAACTTGCCGCCACATGCCTGAGC
TCAGCGTTAAGTTTTTGGTCCTCGTCCGCGACCCACGGGCTGCACTCCAC
GGGCTTTCCCAGTCTTGGGAACGATCGACGAACGAGCTAGACCGCGCCAT
GTCCAAGAACTGCACCCAACTTGCCGCCACGATATGCTCGTCTACGGAGA
AAAAGCTGGAAAGTATGATCAACCTTGGAAATGACCGTTTCAGGGTGCTC
AAGTACGAGACGGATATGCTCGTCTACGGAGAAAAAGCTGGAAAGTATGA
TCAACCTTGGAAATGACCGTTTCAGGGTGCTCAAGTACGAGACGGCCGCA
GCAACCCCTTTCCCGATGACGGAGAGTATCTACGCATGGTTGGACCTCGG
GAACCTTCCCGAAGAGGTGCGCCGCTTCACCTTAAGACCCGTTCAACGAT
TGGGGGGGGGGATGTAAGCCGCAGCAACCCCTTTCCCGATGACGGAGAGT
ATCTACGCATGGTTGGACCTCGGGAACCTTCCCGAAGAGGTGCGCCGCTT
CACCTTAAGACCCGTTCAACGATTGGGGGGGGGGATGTAA
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