mRNA_F-serratus_M_contig922.20628.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig922.20628.1
Unique NamemRNA_F-serratus_M_contig922.20628.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig922.20628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig922contigF-serratus_M_contig922:104027..105279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size313
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig922.20628.1prot_F-serratus_M_contig922.20628.1Fucus serratus malepolypeptideF-serratus_M_contig922 104699..105279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.3115916-UTR-F-serratus_M_contig922:104026..1041311622932672.3115916-UTR-F-serratus_M_contig922:104026..104131Fucus serratus maleUTRF-serratus_M_contig922 104027..104131 +
1690964415.4467044-UTR-F-serratus_M_contig922:104026..1041311690964415.4467044-UTR-F-serratus_M_contig922:104026..104131Fucus serratus maleUTRF-serratus_M_contig922 104027..104131 +
1622932672.3324497-UTR-F-serratus_M_contig922:104694..1046981622932672.3324497-UTR-F-serratus_M_contig922:104694..104698Fucus serratus maleUTRF-serratus_M_contig922 104695..104698 +
1690964415.4575818-UTR-F-serratus_M_contig922:104694..1046981690964415.4575818-UTR-F-serratus_M_contig922:104694..104698Fucus serratus maleUTRF-serratus_M_contig922 104695..104698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.3479738-CDS-F-serratus_M_contig922:104698..1048691622932672.3479738-CDS-F-serratus_M_contig922:104698..104869Fucus serratus maleCDSF-serratus_M_contig922 104699..104869 +
1690964415.4684062-CDS-F-serratus_M_contig922:104698..1048691690964415.4684062-CDS-F-serratus_M_contig922:104698..104869Fucus serratus maleCDSF-serratus_M_contig922 104699..104869 +
1622932672.3604772-CDS-F-serratus_M_contig922:105246..1052791622932672.3604772-CDS-F-serratus_M_contig922:105246..105279Fucus serratus maleCDSF-serratus_M_contig922 105247..105279 +
1690964415.4782832-CDS-F-serratus_M_contig922:105246..1052791690964415.4782832-CDS-F-serratus_M_contig922:105246..105279Fucus serratus maleCDSF-serratus_M_contig922 105247..105279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig922.20628.1

>prot_F-serratus_M_contig922.20628.1 ID=prot_F-serratus_M_contig922.20628.1|Name=mRNA_F-serratus_M_contig922.20628.1|organism=Fucus serratus male|type=polypeptide|length=68bp
MPAIQGMLLAFAAIFIAAVNAVSLEHIPFYKALSEGNSSIITTHGPFTFS
ASCDSAAVTLDVLVEATE
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mRNA from alignment at F-serratus_M_contig922:104027..105279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig922.20628.1 ID=mRNA_F-serratus_M_contig922.20628.1|Name=mRNA_F-serratus_M_contig922.20628.1|organism=Fucus serratus male|type=mRNA|length=1253bp|location=Sequence derived from alignment at F-serratus_M_contig922:104027..105279+ (Fucus serratus male)
AGAACGGCGCTTATCTCGTTAGTTCCTTGAGCTTCACTTCGCGAAGAGAA
CCTTACTCCAGCCAGTCCTGCGCCGCGGCCACATCCTCACACTACACACC
AACAGGTAGGTACGCCAAAGCATGCCCGATGAGCCTCCTCCTCTCGAACT
CCGCATTATATCGAACGGGTGGAATGCGCGAACCGATTCAATAATTTCAT
GTAGATCAATTGCCACGATGCATAGCCTTTTATATCATAGTATCTGTCAA
TACAAAATATTGTGTATCATCTGAGGTATTTGTCAACATGGTTCGAAAAG
CACGCTTGTATAGAGAACATAGGTAGCGCATATTATCAAAAAGTCATGTT
TCAGTATGATATGAAACTATGTTGTAATTGAATAAGCCGTGAGTGTATAG
CATGATATGCCCAGATTTGCAGGCATCTGTTTTGCTGGTCCTATTTCATG
CACAACCTGACATAGCACCAGTGCCTCTAAGCCCGCCGAACCACTTTTAC
TACAAATGTGAGTCACATCAATGTGCCCTCCACGTATTCTGAGTCAATAC
AGATCCATCAGTGTTGCCGTCGGACCCTCAGCAGGTAACCGCTGCATCCA
TCCCCCGATTAAATCCCGTACCTGCTTTCCCATCATACTTTCGTTTTGCA
CCTCACTGCATTGCGCAGAAATATGCCTGCCATCCAGGGCATGCTTCTCG
CTTTCGCCGCAATATTTATCGCCGCGGTAAACGCCGTCTCCCTGGAGCAT
ATTCCATTCTACAAAGCTTTGTCGGAGGGAAATAGTTCCATCATTACCAC
GCACGGGCCTTTTACATTTTCGGCATCTTGCGACTCAGCCGCTGTGAGTA
TGTATGTATGAATGTTCCAGCTTCTCTTGAATAAAAAACACAGCTCCCCC
TTTCGTTTAAACATGGCCGTGTTTGAGTCTGTCGCCCCCGATGGTGATGC
CTACTGTAAATATCAAGTGTTACGAGTTACATACCTGGTACTGCCCGACT
ACGGAGAAGTGCATGTATGCCTCCCACCGGAATGTTGCGGTTCGTGTCGT
AACAATAGAACAGCGGCAAGCGGTTGGCGTACCGATAGTAGCCTAAAAGA
CGCCCATTTCCTGCGCCACAAATTGTTTGCGCAGGCAAGAAGATATCTAG
TCATCCAACACCTACGACAGGTGTTGCTGCGAGATAACTGTGTTTCCGGG
TCCCTCGCTCCTAACCACAGGTGACGCTGGATGTACTCGTCGAGGCCACT
GAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig922:104027..105279+

>mRNA_F-serratus_M_contig922.20628.1 ID=mRNA_F-serratus_M_contig922.20628.1|Name=mRNA_F-serratus_M_contig922.20628.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig922:104027..105279+ (Fucus serratus male)
ATGCCTGCCATCCAGGGCATGCTTCTCGCTTTCGCCGCAATATTTATCGC
CGCGGTAAACGCCGTCTCCCTGGAGCATATTCCATTCTACAAAGCTTTGT
CGGAGGGAAATAGTTCCATCATTACCACGCACGGGCCTTTTACATTTTCG
GCATCTTGCGACTCAGCCGCTATGCCTGCCATCCAGGGCATGCTTCTCGC
TTTCGCCGCAATATTTATCGCCGCGGTAAACGCCGTCTCCCTGGAGCATA
TTCCATTCTACAAAGCTTTGTCGGAGGGAAATAGTTCCATCATTACCACG
CACGGGCCTTTTACATTTTCGGCATCTTGCGACTCAGCCGCTGTGACGCT
GGATGTACTCGTCGAGGCCACTGAGGTGACGCTGGATGTACTCGTCGAGG
CCACTGAG
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