mRNA_F-serratus_M_contig921.20627.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig921.20627.1
Unique NamemRNA_F-serratus_M_contig921.20627.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: D7G4R6_ECTSI (Nitrite transporter NAR1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R6_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 7.220e-46
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSKKK 270
            VWMS  A+DA GKF AIFLPISAFVA+GLDHSVANMFLIPLGM LGAGV+WSQFL ANLLPVTLGNIVGGAVAVCGLY+ +FGSLF KKK
Sbjct:  255 VWMSVSASDAAGKFFAIFLPISAFVALGLDHSVANMFLIPLGMALGAGVTWSQFLLANLLPVTLGNIVGGAVAVCGLYSGAFGSLFGKKK 344          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: K0TJP3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJP3_THAOC)

HSP 1 Score: 114 bits (284), Expect = 2.950e-30
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSKK 267
            V+M++G     GK  A++ PISAFVAMG DHSVANMF+IPLGM  GA VS S FL  NLLPVTLGNIVGGA+ V GLY ++FG+   KK
Sbjct:   74 VYMASGCASLIGKMVAVWFPISAFVAMGFDHSVANMFIIPLGMLRGADVSVSDFLLKNLLPVTLGNIVGGALCVMGLYGSTFGNWGKKK 162          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: A0A835YP49_9STRA (Nitrite transporter NAR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP49_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.420e-30
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGS 252
            V+MSAGA+DA GK  AIFLPISAFVA+G DH VANMFL+P  M +GA +   +FL+ +LLPVTLGNIVGGA AV G+Y+ +FGS
Sbjct:  242 VYMSAGASDAGGKLAAIFLPISAFVALGTDHCVANMFLLPAAMMVGADIGLGRFLFGHLLPVTLGNIVGGAAAVAGMYSLAFGS 325          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: A0A7S1BVI6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVI6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.100e-29
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSKKK 270
            V+M++G     GK  A++ PISAFVA+GL+HSVANMF+IPLG+  GA VS   FL  NLLPVTLGNIVGGA+ V GLY ++FG+ F  K+
Sbjct:   10 VYMASGCASLAGKMVAVWFPISAFVALGLEHSVANMFIIPLGIMRGANVSAMDFLTKNLLPVTLGNIVGGALCVMGLYGSAFGNWFKPKE 99          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: I0YIS8_COCSC (Formate/nitrite transporter (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIS8_COCSC)

HSP 1 Score: 111 bits (278), Expect = 1.970e-28
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSL 255
            V+M+  A+ A GK  A++ PISAFVA+GL+HSVANMF++PLG+ LGA VS++ FL ANLLPVTLGNIVGGAV +  +YA  FG +
Sbjct:  159 VYMANAASSAPGKVVAVWFPISAFVALGLEHSVANMFMVPLGIALGAKVSFATFLTANLLPVTLGNIVGGAVCIAAVYAVCFGKM 243          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: A0A061RZ79_9CHLO (Formate nitrite transporter n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZ79_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 2.310e-28
Identity = 58/88 (65.91%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSK 264
            VW +  AN   GK   ++ PISAFVAMGL+HSVANMFLIP+GM LGA VS SQFL ANL+PVTLGNIVGGA+ V   YA  FG L  K
Sbjct:  257 VWQATAANSLSGKAIGVWFPISAFVAMGLEHSVANMFLIPMGMALGAPVSISQFLTANLIPVTLGNIVGGAIFVGTAYAYIFGRLGKK 344          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: S0F3U1_CHOCR (Nitrite transporter NAR1 (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3U1_CHOCR)

HSP 1 Score: 109 bits (272), Expect = 2.050e-27
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFG 249
            V++S  A+    KF A+FLP+SAFV MGLDHSVANMFL+P+GM LGA V W  FL ANL PVTLGNIVGG   V G+Y   +G
Sbjct:  177 VYLSNAASGFGSKFLAVFLPVSAFVTMGLDHSVANMFLVPMGMALGADVGWKTFLMANLWPVTLGNIVGGMGMVAGMYYLCYG 259          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: A0A8J9ST54_9CHLO (Probable formate transporter 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9ST54_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 2.920e-27
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSL 255
            V+M+  A+ A GK  A++ PISAFVA+GL+HSVANMF++PLG+ LGA VS++ FL ANLLPVTLGNIVGGAV +   YAA FG +
Sbjct:  245 VYMANAASSAPGKAVAVWFPISAFVALGLEHSVANMFMVPLGIALGAKVSFATFLTANLLPVTLGNIVGGAVCIALAYAACFGKM 329          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: B8BXN4_THAPS (Formate/nitrite transporter family member n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXN4_THAPS)

HSP 1 Score: 108 bits (271), Expect = 3.560e-27
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSKK 267
            V+M++G     GK  A++ PISAFVA+GLDHSVANMF+IPLGM  GA ++   F+  NL+PVTLGNIVGGA+ V G+Y ++FG  F  K
Sbjct:  181 VYMASGCASLAGKMVAVWFPISAFVALGLDHSVANMFIIPLGMMRGAQITVGDFITKNLIPVTLGNIVGGALCVMGIYGSAFGKWFKSK 269          
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Match: A0A7S0GAY3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAY3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.340e-27
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 VWMSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWSQFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSKKK 270
            V M++G +   GK  A++ PISAFVA+GLDHSVANMFLIPLGM  GA ++ +     NL+PVTLGNIVGGAV V   Y  +FGS FSKK+
Sbjct:  221 VLMASGCSSMIGKMTAVWFPISAFVALGLDHSVANMFLIPLGMMRGAEITIADMFIKNLIPVTLGNIVGGAVCVMAPYGKTFGSWFSKKE 310          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig921.20627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R6_ECTSI7.220e-4685.56Nitrite transporter NAR1 n=2 Tax=Ectocarpus TaxID=... [more]
K0TJP3_THAOC2.950e-3064.04Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835YP49_9STRA9.420e-3066.67Nitrite transporter NAR1 n=1 Tax=Tribonema minus T... [more]
A0A7S1BVI6_9STRA1.100e-2960.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
I0YIS8_COCSC1.970e-2862.35Formate/nitrite transporter (Fragment) n=1 Tax=Coc... [more]
A0A061RZ79_9CHLO2.310e-2865.91Formate nitrite transporter n=1 Tax=Tetraselmis sp... [more]
S0F3U1_CHOCR2.050e-2762.65Nitrite transporter NAR1 (Fragment) n=1 Tax=Chondr... [more]
A0A8J9ST54_9CHLO2.920e-2763.53Probable formate transporter 1 n=1 Tax=Coccomyxa s... [more]
B8BXN4_THAPS3.560e-2757.30Formate/nitrite transporter family member n=1 Tax=... [more]
A0A7S0GAY3_9STRA5.340e-2760.00Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig921contigF-serratus_M_contig921:212066..213201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2e-34
Seed eggNOG ortholog2880.D7G4R6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Formate/nitrite transporter
EggNOG OGs2QUGF@2759,COG2116@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig921.20627.1prot_F-serratus_M_contig921.20627.1Fucus serratus malepolypeptideF-serratus_M_contig921 212066..213195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.2352262-CDS-F-serratus_M_contig921:212065..2122311622932672.2352262-CDS-F-serratus_M_contig921:212065..212231Fucus serratus maleCDSF-serratus_M_contig921 212066..212231 -
1690964415.4087286-CDS-F-serratus_M_contig921:212065..2122311690964415.4087286-CDS-F-serratus_M_contig921:212065..212231Fucus serratus maleCDSF-serratus_M_contig921 212066..212231 -
1622932672.2488997-CDS-F-serratus_M_contig921:213094..2131951622932672.2488997-CDS-F-serratus_M_contig921:213094..213195Fucus serratus maleCDSF-serratus_M_contig921 213095..213195 -
1690964415.42532-CDS-F-serratus_M_contig921:213094..2131951690964415.42532-CDS-F-serratus_M_contig921:213094..213195Fucus serratus maleCDSF-serratus_M_contig921 213095..213195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.2632415-UTR-F-serratus_M_contig921:213195..2132011622932672.2632415-UTR-F-serratus_M_contig921:213195..213201Fucus serratus maleUTRF-serratus_M_contig921 213196..213201 -
1690964415.4361193-UTR-F-serratus_M_contig921:213195..2132011690964415.4361193-UTR-F-serratus_M_contig921:213195..213201Fucus serratus maleUTRF-serratus_M_contig921 213196..213201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig921.20627.1

>prot_F-serratus_M_contig921.20627.1 ID=prot_F-serratus_M_contig921.20627.1|Name=mRNA_F-serratus_M_contig921.20627.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MSAGANDAFGKFCAIFLPISAFVAMGLDHSVANMFLIPLGMGLGAGVSWS
QFLYANLLPVTLGNIVGGAVAVCGLYAASFGSLFSKKK*
back to top

mRNA from alignment at F-serratus_M_contig921:212066..213201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig921.20627.1 ID=mRNA_F-serratus_M_contig921.20627.1|Name=mRNA_F-serratus_M_contig921.20627.1|organism=Fucus serratus male|type=mRNA|length=1136bp|location=Sequence derived from alignment at F-serratus_M_contig921:212066..213201- (Fucus serratus male)
GTGTGGATGTCAGCTGGCGCCAATGACGCATTCGGGAAGTTCTGCGCCAT TTTCTTGCCTATTTCGGCGTTCGTGGCCATGGGTCTGGATCACTCCGTCG CCAACATGTGCGAATCGAACGTCATGAACGAAAAAGTCGCTATTAATAGA CACTAGTAAATGTAGCAATAGTGATAGTTGATATTTTATTAGTTGTTTCT CCCTCTCTGTATAACCTGCTATATTCGCTACGCTAAGATCGCTGATTTCC AGGGCGTTTAAAATGCCTCGAAACTGGCGATCTGGCTCAAGAGCAATGTA TGTATGTACTCATGAATTTGTATGTATATATGCATATATGGTGATCACAT ATACAGTATCAAGAGTAAGGATCAACCGGGTAATGTTGTCAATCCTGCTC GTGGTACGCTGGACAGGGAAAATGAATGTTTCCCTGTTCCCGTTCGTGCC TGATACACTAGTACACTAGTACAGTAATACAGTAATACAGTAATTTGGTC TCGCGAGATGAGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCATCT CCATACTCAGGCTGAATCTGGTGCTTACTTAAAATATTCCTCCCCATTTT CGCGGCGGCGTCCATTTATTCATTTAAACCGCCATACGCCATCGGGTCAG TCCCGAGTTTATCGGGCCACGCAAATGCGTACCGACGGCTTTCACTGCCG AGAATTCGCCGGCACAGAGCTAGTAAACTTCAAGTTAGTTCCGAACGGGT GCTGCCTTGGCAGGTCACCATGGACCAATTAATATGCGCCTCTCTTTCCC ACATCCACTATTGCTATGAAGTGGGCATGTCGAAAGTACCGGCAGCACGT TCAACACGTTGCCGATTTCCACTGATGAAATGATTAATGAGCCCCGTGTC ATCCCTCGTTCCCAACTCCCTCGATGACCCTGTTCTGCACGCTTTGCTCC CGACACAACCGATCTCCAAGGTTCCTGATCCCACTTGGTATGGGGCTCGG TGCTGGCGTCTCGTGGTCGCAGTTCCTTTATGCAAACCTCCTCCCGGTAA CCTTGGGCAATATCGTTGGAGGGGCCGTCGCGGTATGCGGTCTATATGCC GCCTCCTTTGGATCGCTCTTTTCGAAAAAGAAATAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig921:212066..213201-

>mRNA_F-serratus_M_contig921.20627.1 ID=mRNA_F-serratus_M_contig921.20627.1|Name=mRNA_F-serratus_M_contig921.20627.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig921:212066..213201- (Fucus serratus male)
ATGTCAGCTGGCGCCAATGACGCATTCGGGAAGTTCTGCGCCATTTTCTT
GCCTATTTCGGCGTTCGTGGCCATGGGTCTGGATCACTCCGTCGCCAACA
TATGTCAGCTGGCGCCAATGACGCATTCGGGAAGTTCTGCGCCATTTTCT
TGCCTATTTCGGCGTTCGTGGCCATGGGTCTGGATCACTCCGTCGCCAAC
ATGTTCCTGATCCCACTTGGTATGGGGCTCGGTGCTGGCGTCTCGTGGTC
GCAGTTCCTTTATGCAAACCTCCTCCCGGTAACCTTGGGCAATATCGTTG
GAGGGGCCGTCGCGGTATGCGGTCTATATGCCGCCTCCTTTGGATCGCTC
TTTTCGAAAAAGAAATAGGTTCCTGATCCCACTTGGTATGGGGCTCGGTG
CTGGCGTCTCGTGGTCGCAGTTCCTTTATGCAAACCTCCTCCCGGTAACC
TTGGGCAATATCGTTGGAGGGGCCGTCGCGGTATGCGGTCTATATGCCGC
CTCCTTTGGATCGCTCTTTTCGAAAAAGAAATAG
back to top