mRNA_F-serratus_M_contig921.20625.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig921.20625.1 vs. uniprot
Match: D7G4R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.030e-126 Identity = 305/703 (43.39%), Postives = 426/703 (60.60%), Query Frame = 1
Query: 130 KYDSLRIAFESRLANLANTVRLSIQHMSNNKVLRELKSTSITRKFAPDHARLLIKRHLAAERDSYFYHLALKLADAEGEASLYQRRNENLTSSLAAMRAGVTLRERSDVKFTNAKTDIQELRRDYQKALEEASAECRQIKAQLVDNQRRLTSVLEERDEQAAHIRLQQAELTAAWAREVQANLMGTSLPRVERELGEQKSTNARLSSKLSQSQERVHDLTASNQRLELQVESLRNDATQHEKHLQQAIASTKKSEAQFRDTIARVESLMEEEAKESAATIDELRDRALNAKDRLSEQVKRLANTNAQLNRAMAKTKVEISELQHRTEVAQTSKEAGAEAAAAREKVLMAEVEQARARADVMSQSLAEAIREQSGLVAETVNAKAAVEVLEARNRSAELERARTAVYEADRSRASTAQCALSGVSAPVCEGELIQSVGAGMQKILADKLEDASNHISQLRSMLRQEIGRREAAEAEVSEAQGHLNSSRRELKELRHLAGKLEQIGRTSIVHVDEKNQAMKHLQVQLQVRGLDPRVDGEAFGLKRGKPRHQYIRERLRYVRRSCSASDESSESVRDSRYERTERSHGLRRPICEERN--REMMMALSILRADLRGMARKVIKAKADNDEIVRRFTSDVASRANHLAQTLQRAVEERAVSRRQAFEALAAGATDRKAVARLESVVQAVSSILYEALGVRLPSTLWG 2232
+YDSL+ FE+RLA+LA+T+RL+++ ++VL +L ++ TR+FAP HA+ LIK++LA+ERD++ + LA++LA+ E E R NE L S +A ++ ERS + DIQELRR+YQ ALE++S ECRQ++A+L ++RR + + ERDEQAA R Q L A A+E++ R+ EL E+KS +LSS+L+Q+Q+R+ L +S+Q L+ Q + L D TQ ++ LQ A A+ +KSEA+FR+ + R+ESLME EAK+ AA I LRD+AL AK+RLS +V+RL N L + +A + SEL+ R + A SKE A AAAARE+ L A EQAR RAD MSQSLAEAIREQSGL+ ET NAK A EVLEA++R+AE+E +LA+KL++AS HIS+LR++LRQE+ RREAAEAEVSEAQG+L SSR+EL ELRHLA KLEQ+GR S H+D +QA+ HL+ +L RG+ V GE +RG R + R+ R + A S ++ R + + + + R + AL+ LRA+LR + ++ KAKA+N+E VR T VA R L + AAGATDRK+ L+ VV+ +SSIL + LGV +P+ L G
Sbjct: 3 RYDSLKTTFEARLASLASTIRLAVESTQQDQVLVQLNASENTREFAPAHAQALIKQYLASERDTFSHDLAIRLAEVEAELLRCSRHNEELRSVVAVLKGEAARGERSRSEAIAVDADIQELRREYQIALEDSSVECRQLQAELSHSKRRSSVLKGERDEQAAQSRSLQQALADAGAKELEVT-------RLNEELREEKSRGVKLSSELAQAQQRLDALASSHQELKFQTQCLEKDLTQRDRRLQLADANKRKSEARFREAVTRMESLMEGEAKDCAAAIKNLRDKALLAKERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEVE------------------------------------------NMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGVAGTVGGEEA--RRGANREEE-RKHGRSLPSGGWARGRSEGGGKEEAGLLCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDG 653
BLAST of mRNA_F-serratus_M_contig921.20625.1 vs. uniprot
Match: A0A6H5KLZ7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE) HSP 1 Score: 268 bits (686), Expect = 2.820e-71 Identity = 225/600 (37.50%), Postives = 317/600 (52.83%), Query Frame = 1
Query: 1006 RLSEQVKRLANTNAQLNRAMAKTKVEISELQHRTEVAQTSKEAGAEAAAAREKVLMAEVEQARARADVMSQSLAEAIREQSGLVAETVNAKAAVEVLEARNRSAELERARTAVYEADRSRASTAQCALSGVSAPVCEGELIQSVGAGMQKILADKLEDASNHISQLRSMLRQEIGRREAAEAEVSEAQGHLNSSRRELKELRHLAGKLEQIGRTSIVHVDEKNQAMKHLQVQLQVRGLDPRVDGEAFGLKRGKPRHQYIRERLRYVRRSCSASDESSESVRDSRYERTERSHGLRRPICEERN--REMMMALSILRADLRGMARKVIKAKADNDEIVRRFTSDVASRANHLAQTLQRAVEERAVSRRQAFEALAAGATDRKAVARLESVVQAVSSILYEALGVRLPSTL-WGEGASCEDNEVLQRALSELSSSVANAVTRVMEDAKENLRKQLHMDSLESKDGGGDRDGDRESSTHALDGAVWGERSKDNFNMVAELQKIEVENELQSLRAQVDEMSVKYSAAVAERASVDKSKLEEARKWAQDEAAQVERDHRSAVVALEATLEVERNRCKDLRTRLDRQMREHQTVLTDSEQKLLQTQ 2796
RLS +V+RL N L R +A + SEL+ R + A SKE A A AARE+ L A EQARARAD MSQSLAE +LADKL++AS HIS+LR++LRQE+ RREAAEAEVSEAQG H+D +QA++HL+ +L RG+ V G G RG P + RE R + A S ++ R + + + + R + AL+ LRA+LR + ++ KAKA+N+ VR T VA R L + +++A +++A ++RQA EA AAGA DRK+ L+ VV+ +SSIL + L V +P+ L GE A E+L+R L EL+++V +A+++V E AK+ + Q H DSL +G +DG VWGERSKD+FNM+A+LQKIE E++LQSL+A++D+M+ KYS A+A++ +VD + L E ++ A+ E A+ R H V ALE TL E++ C+DLR +L+RQ REHQ L D +Q+LLQTQ
Sbjct: 299 RLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE---------------------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQG--------------------------FAHMDGNSQAVRHLEGELHARGVAGTVGGGEAG--RG-PLREEEREDGRSMLSGGRARGRSEGGGKEEAGLLCARRRRVPQGLSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQKQAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEAGERGQEMLERGLEELTAAVTDALSKVKERAKQAVPAQPHGDSLAPGNG--------RYCMSTVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQ 786 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig921.20625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig921.20625.1 >prot_F-serratus_M_contig921.20625.1 ID=prot_F-serratus_M_contig921.20625.1|Name=mRNA_F-serratus_M_contig921.20625.1|organism=Fucus serratus male|type=polypeptide|length=1242bp MDDPEALFRAKYDSLRIAFESRLANLANTVRLSIQHMSNNKVLRELKSTSback to top mRNA from alignment at F-serratus_M_contig921:189840..203229- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig921.20625.1 ID=mRNA_F-serratus_M_contig921.20625.1|Name=mRNA_F-serratus_M_contig921.20625.1|organism=Fucus serratus male|type=mRNA|length=13390bp|location=Sequence derived from alignment at F-serratus_M_contig921:189840..203229- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig921:189840..203229- >mRNA_F-serratus_M_contig921.20625.1 ID=mRNA_F-serratus_M_contig921.20625.1|Name=mRNA_F-serratus_M_contig921.20625.1|organism=Fucus serratus male|type=CDS|length=7452bp|location=Sequence derived from alignment at F-serratus_M_contig921:189840..203229- (Fucus serratus male)back to top |