mRNA_F-serratus_M_contig920.20620.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig920.20620.1
Unique NamemRNA_F-serratus_M_contig920.20620.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig920.20620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig920contigF-serratus_M_contig920:316516..317053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig920.20620.1prot_F-serratus_M_contig920.20620.1Fucus serratus malepolypeptideF-serratus_M_contig920 316574..316957 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932666.951155-UTR-F-serratus_M_contig920:316515..3165731622932666.951155-UTR-F-serratus_M_contig920:316515..316573Fucus serratus maleUTRF-serratus_M_contig920 316516..316573 +
1690964412.8139682-UTR-F-serratus_M_contig920:316515..3165731690964412.8139682-UTR-F-serratus_M_contig920:316515..316573Fucus serratus maleUTRF-serratus_M_contig920 316516..316573 +
1622932666.9837496-UTR-F-serratus_M_contig920:316957..3170531622932666.9837496-UTR-F-serratus_M_contig920:316957..317053Fucus serratus maleUTRF-serratus_M_contig920 316958..317053 +
1690964412.8358223-UTR-F-serratus_M_contig920:316957..3170531690964412.8358223-UTR-F-serratus_M_contig920:316957..317053Fucus serratus maleUTRF-serratus_M_contig920 316958..317053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932666.9680734-CDS-F-serratus_M_contig920:316573..3169571622932666.9680734-CDS-F-serratus_M_contig920:316573..316957Fucus serratus maleCDSF-serratus_M_contig920 316574..316957 +
1690964412.8261776-CDS-F-serratus_M_contig920:316573..3169571690964412.8261776-CDS-F-serratus_M_contig920:316573..316957Fucus serratus maleCDSF-serratus_M_contig920 316574..316957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig920.20620.1

>prot_F-serratus_M_contig920.20620.1 ID=prot_F-serratus_M_contig920.20620.1|Name=mRNA_F-serratus_M_contig920.20620.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MNAEEPVAQTGPRRRDGWSREGMSSRYSVIKKAVRQPLHVKLYCCDDKRQ
NPEGYRRVHLNMIQRKFTTPKPGVALHLILRNLAGNRLGECYDRLLQLQQ
AGFNRHQFPVYYGSQEEFSKWWPFSER*
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mRNA from alignment at F-serratus_M_contig920:316516..317053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig920.20620.1 ID=mRNA_F-serratus_M_contig920.20620.1|Name=mRNA_F-serratus_M_contig920.20620.1|organism=Fucus serratus male|type=mRNA|length=538bp|location=Sequence derived from alignment at F-serratus_M_contig920:316516..317053+ (Fucus serratus male)
CAGAAGAACACAGAAAGGACAGTAAATACGCCATCAGTTTAAATTACGTC
AAACGTAGATGAACGCGGAGGAACCCGTAGCGCAAACGGGGCCTCGGCGA
CGAGATGGCTGGAGCCGGGAAGGCATGAGTTCGCGGTATTCGGTAATCAA
AAAGGCTGTCCGGCAGCCTCTACACGTCAAACTATACTGCTGCGACGACA
AGCGACAAAACCCAGAGGGATACAGAAGAGTGCACCTAAATATGATTCAA
CGGAAGTTCACCACACCTAAGCCTGGCGTTGCATTGCACCTGATACTCAG
AAATCTCGCTGGGAACCGACTCGGGGAATGTTACGACAGGCTACTGCAGC
TTCAACAAGCTGGTTTCAACCGCCATCAATTTCCGGTCTACTACGGGAGT
CAAGAAGAGTTCTCGAAGTGGTGGCCCTTCTCTGAACGTTAAAAATGAAC
TCACCACGGGTCCCAAAATGGGGTGAGGGCCTCGCCGGAAGCGACGTCCT
GCTCTCCACGTTTGGAAGGTATCCTACGATGGCTACGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig920:316516..317053+

>mRNA_F-serratus_M_contig920.20620.1 ID=mRNA_F-serratus_M_contig920.20620.1|Name=mRNA_F-serratus_M_contig920.20620.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig920:316516..317053+ (Fucus serratus male)
ATGAACGCGGAGGAACCCGTAGCGCAAACGGGGCCTCGGCGACGAGATGG
CTGGAGCCGGGAAGGCATGAGTTCGCGGTATTCGGTAATCAAAAAGGCTG
TCCGGCAGCCTCTACACGTCAAACTATACTGCTGCGACGACAAGCGACAA
AACCCAGAGGGATACAGAAGAGTGCACCTAAATATGATTCAACGGAAGTT
CACCACACCTAAGCCTGGCGTTGCATTGCACCTGATACTCAGAAATCTCG
CTGGGAACCGACTCGGGGAATGTTACGACAGGCTACTGCAGCTTCAACAA
GCTGGTTTCAACCGCCATCAATTTCCGGTCTACTACGGGAGTCAAGAAGA
GTTCTCGAAGTGGTGGCCCTTCTCTGAACGTTAAATGAACGCGGAGGAAC
CCGTAGCGCAAACGGGGCCTCGGCGACGAGATGGCTGGAGCCGGGAAGGC
ATGAGTTCGCGGTATTCGGTAATCAAAAAGGCTGTCCGGCAGCCTCTACA
CGTCAAACTATACTGCTGCGACGACAAGCGACAAAACCCAGAGGGATACA
GAAGAGTGCACCTAAATATGATTCAACGGAAGTTCACCACACCTAAGCCT
GGCGTTGCATTGCACCTGATACTCAGAAATCTCGCTGGGAACCGACTCGG
GGAATGTTACGACAGGCTACTGCAGCTTCAACAAGCTGGTTTCAACCGCC
ATCAATTTCCGGTCTACTACGGGAGTCAAGAAGAGTTCTCGAAGTGGTGG
CCCTTCTCTGAACGTTAA
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