mRNA_F-serratus_M_contig920.20610.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig920.20610.1
Unique NamemRNA_F-serratus_M_contig920.20610.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig920.20610.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.320e-35
Identity = 77/151 (50.99%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    1 WYAGSLVAVLSSLRGKETYVECARNRWIASIYALVFNVHLHSGLVFLPVLLAKGIFRIARHID---RSDPD----------SSTAFGVGDAA-FEWRVFAMVWAFLVVNVALYVNMSHKQLWMWINVSSVLWMLLCLAVLVGSAFAVTPLI 411
            WYAGSLVAV S L GKE+Y +   +RWI S YA V N+ LHSGL  +PVLLAKG+ ++  + +    SD D           S   G+      +W VFA+VW F ++NV  Y+  S  QLWMWINV+SVLWMLLC   LVGS FAV+PLI
Sbjct:  344 WYAGSLVAVSSHLTGKESYFQAEWHRWIISSYAFVANLFLHSGLALMPVLLAKGLHQLVLYDESRGESDDDWNDEWSEWQEESADDGIDQHTNLDWIVFALVWGFFLLNVGFYLTRSQDQLWMWINVTSVLWMLLCGGTLVGSGFAVSPLI 494
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig920.20610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP28_9PHAE2.320e-3550.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig920contigF-serratus_M_contig920:59086..61458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size422
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig920.20610.1prot_F-serratus_M_contig920.20610.1Fucus serratus malepolypeptideF-serratus_M_contig920 59086..61458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932667.325863-CDS-F-serratus_M_contig920:59085..591681622932667.325863-CDS-F-serratus_M_contig920:59085..59168Fucus serratus maleCDSF-serratus_M_contig920 59086..59168 +
1690964412.9762542-CDS-F-serratus_M_contig920:59085..591681690964412.9762542-CDS-F-serratus_M_contig920:59085..59168Fucus serratus maleCDSF-serratus_M_contig920 59086..59168 +
1622932667.3459005-CDS-F-serratus_M_contig920:60517..606251622932667.3459005-CDS-F-serratus_M_contig920:60517..60625Fucus serratus maleCDSF-serratus_M_contig920 60518..60625 +
1690964412.9872231-CDS-F-serratus_M_contig920:60517..606251690964412.9872231-CDS-F-serratus_M_contig920:60517..60625Fucus serratus maleCDSF-serratus_M_contig920 60518..60625 +
1622932667.3604386-CDS-F-serratus_M_contig920:60850..609731622932667.3604386-CDS-F-serratus_M_contig920:60850..60973Fucus serratus maleCDSF-serratus_M_contig920 60851..60973 +
1690964412.997366-CDS-F-serratus_M_contig920:60850..609731690964412.997366-CDS-F-serratus_M_contig920:60850..60973Fucus serratus maleCDSF-serratus_M_contig920 60851..60973 +
1622932667.3793042-CDS-F-serratus_M_contig920:61352..614581622932667.3793042-CDS-F-serratus_M_contig920:61352..61458Fucus serratus maleCDSF-serratus_M_contig920 61353..61458 +
1690964413.0077922-CDS-F-serratus_M_contig920:61352..614581690964413.0077922-CDS-F-serratus_M_contig920:61352..61458Fucus serratus maleCDSF-serratus_M_contig920 61353..61458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig920.20610.1

>prot_F-serratus_M_contig920.20610.1 ID=prot_F-serratus_M_contig920.20610.1|Name=mRNA_F-serratus_M_contig920.20610.1|organism=Fucus serratus male|type=polypeptide|length=140bp
WYAGSLVAVLSSLRGKETYVECARNRWIASIYALVFNVHLHSGLVFLPVL
LAKGIFRIARHIDRSDPDSSTAFGVGDAAFEWRVFAMVWAFLVVNVALYV
NMSHKQLWMWINVSSVLWMLLCLAVLVGSAFAVTPLIILA
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mRNA from alignment at F-serratus_M_contig920:59086..61458+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig920.20610.1 ID=mRNA_F-serratus_M_contig920.20610.1|Name=mRNA_F-serratus_M_contig920.20610.1|organism=Fucus serratus male|type=mRNA|length=2373bp|location=Sequence derived from alignment at F-serratus_M_contig920:59086..61458+ (Fucus serratus male)
TGGTACGCGGGATCGCTTGTGGCTGTTCTTTCCAGCCTTAGAGGAAAAGA
GACCTACGTGGAGTGCGCTCGGAATCGATGGATGTGAGTTTTATTTTGCT
TTTCTGTTTTGACCGATGGATGGTAAAAACACTCGGGAGGATGTACACTC
GTCACAAGATTCTAAGATTGTGTTTGCATGCGGCGCAACAATGCCACAGC
TCTGTTCGGGGAATTTGTAGAGACAGAGCGCGCACGAACAACGAACAAGT
TACCTCTCTCTCTCTGCCTCTCTTTTTTCTTTCTCTAATTGCAACTATAA
AAACGCGGTGCGGATACTTCCGGCACTTAGTTTCCGGCTTGGGGCAAAAT
CCGCTTGTTATGTCAAACAAACATATACCATATAAATATAGTCTATTGGG
GTAAACTCGGATAGATTTTCATCAGCTGCAATACAGCAGCAGTATATTAC
AAGCTGGTATACTGAATATAGTAAATAGTATAAATAGGAGATATAAGCCG
TGAGGGTGGTGCATGTTGTATTGGTCCATGGGTTTCAGAAGATACACTGT
GGCTAGGCGGATGAGTGTAAACTTATACTGAGTACACAACGTACGGGATG
ACAAGCACTAAGTTATAACGAACTTAGCATGAGATCGACGTATTTGAAAA
CGCATGGCTTGGTGTTCGTTGGGTCGTGGGTCCCGACGCGCACTTGAAGT
TGATCGTTGACCGTGACAAGCGCTCCTTTTTCAAGCCCGTGTGAGTCGCG
AAGCATTTTATCCTGAAAAGTTTTATGTATGGTCACACACGTTGCGAGAG
TATGGATCAGATCAACCCGGGTAAGGTTGACAATTCTGCTTGTGGTCAGC
TGAACAGGGAAATAATGGATATTTCCCTGTCCGCGTTCGCGCCTGAGAAT
TTGATCTTGCGAGACGAGTTCGGCAGTCTCGCCCCGCGTAAGCCTGCCCA
TCTTTATACTCAGGCTGAATCTGGTGCTTACTTAAGGGATCTCTCCCGAG
TTCCGCGGCGGCGTATATTTATTTATTCAAACCGCCATACACCATCGGGT
CAGTCCCGAGTTTATCGGGTCACGCCATTGCGTACCGGTGGCATTCATTG
CCGAAAGCCCGCCGGCACAGGGTCAGTAAACCTCAAGGTAGTTCCAAACG
GGTGCTGCCTTAGCAGGTCATCATGGACTCTTTCCCACACCCACGAATGG
TATGGAGTGGACATGTTGAAAGTTCCGGCACATATACATATATATATATT
ATATAAGTGTGTATACTGGATACCGTACGGATATATTATATTTTTATTAC
GGTGTTATTTTTTTCTTCCGTTTTCAACCATTTAAAACCGCGGCTCTTTT
CATTTGAGTTTGTACCTTAAGTTTTTGCCGCTGCCGCTGTTGCTAACTTA
CGCTTCCGTTGCCGTTTCGGCTGCCCGGACAGTGCCTCCATCTACGCGCT
GGTGTTCAACGTGCATCTGCACAGCGGCCTAGTTTTCCTTCCCGTTCTTC
TCGCCAAGGGAATCTTTCGCATCGCTCGACACATAGACCGGTGAGCGCCT
GTAAGGCGGCCTCGCCTCGCACACCGTATTGGTGCTCTTGCGTCACGTGA
CTGTCACGTCACACACTGCATTTGATCTGCGGTTGCGCCGCTGTGTTGGT
TTGTGTATCTTTGCGTGTTCGTATGTGCGTATGTAGCTCCGTGTGCACGA
CTTGTTTTGAATGACGATGACGTCACCCCGTCGCCTTGTCCGAACAACAT
CTCTCTATCTCTCAGTTCCGATCCCGATTCTAGCACAGCATTTGGCGTCG
GAGACGCGGCATTCGAGTGGAGGGTGTTCGCCATGGTGTGGGCATTTCTG
GTCGTGAACGTTGCTTTGTACGTCAACATGTCCCACAAGTGAGGATAGTC
TCAGATCAAAAGCTCTCTATAAACGAGATGCCGTGACGCGGCAGCTCTTT
TGTGTGCTAGAGTTGCCGATGTCGCCGATTGGCTGGGGATCTGCTGGGAC
GAAACACGAAGTACTTCCGCCAAGAGGCGTTTTTAATCGCAAGATTTTAT
GCTCTCTCTTTCACTATACTATATTAATAGTACGACAACGTGGCTTGATT
AGCTTATCTTGTGGCTTGTTTTCCCGAGGCGCGTTCGTACGCATCTCAAC
TCGTCGCTAGTAAACGCCATGTGGGAATGACACTTACGTAATGTAACTAT
AATATTTTGAATGGAAGCGCTAAAACACTACTGTCTGTATTGTATCGATG
GGTTGGGTAACGCGCAGGCAGCTGTGGATGTGGATCAACGTGTCTTCCGT
GCTGTGGATGCTGCTGTGCCTCGCGGTACTGGTGGGATCAGCCTTCGCCG
TAACACCCCTGATAATCCTGGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig920:59086..61458+

>mRNA_F-serratus_M_contig920.20610.1 ID=mRNA_F-serratus_M_contig920.20610.1|Name=mRNA_F-serratus_M_contig920.20610.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig920:59086..61458+ (Fucus serratus male)
TGGTACGCGGGATCGCTTGTGGCTGTTCTTTCCAGCCTTAGAGGAAAAGA
GACCTACGTGGAGTGCGCTCGGAATCGATGGATTGGTACGCGGGATCGCT
TGTGGCTGTTCTTTCCAGCCTTAGAGGAAAAGAGACCTACGTGGAGTGCG
CTCGGAATCGATGGATTGCCTCCATCTACGCGCTGGTGTTCAACGTGCAT
CTGCACAGCGGCCTAGTTTTCCTTCCCGTTCTTCTCGCCAAGGGAATCTT
TCGCATCGCTCGACACATAGACCGTGCCTCCATCTACGCGCTGGTGTTCA
ACGTGCATCTGCACAGCGGCCTAGTTTTCCTTCCCGTTCTTCTCGCCAAG
GGAATCTTTCGCATCGCTCGACACATAGACCGTTCCGATCCCGATTCTAG
CACAGCATTTGGCGTCGGAGACGCGGCATTCGAGTGGAGGGTGTTCGCCA
TGGTGTGGGCATTTCTGGTCGTGAACGTTGCTTTGTACGTCAACATGTCC
CACAATTCCGATCCCGATTCTAGCACAGCATTTGGCGTCGGAGACGCGGC
ATTCGAGTGGAGGGTGTTCGCCATGGTGTGGGCATTTCTGGTCGTGAACG
TTGCTTTGTACGTCAACATGTCCCACAAGCAGCTGTGGATGTGGATCAAC
GTGTCTTCCGTGCTGTGGATGCTGCTGTGCCTCGCGGTACTGGTGGGATC
AGCCTTCGCCGTAACACCCCTGATAATCCTGGCCGCAGCTGTGGATGTGG
ATCAACGTGTCTTCCGTGCTGTGGATGCTGCTGTGCCTCGCGGTACTGGT
GGGATCAGCCTTCGCCGTAACACCCCTGATAATCCTGGCC
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