mRNA_F-serratus_M_contig92.20595.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig92.20595.1
Unique NamemRNA_F-serratus_M_contig92.20595.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig92.20595.1 vs. uniprot
Match: D8LTL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-10
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:   78 MPSWGIDLVSELAESTTLDVVRHDFPRKSDEGLNPTQVGSRLR------DCGFSA 224
            M SWG++L+S+LAEST+LD +R DFPRKSDEGLNP Q  + +R      D GF+A
Sbjct:    1 MTSWGLELLSKLAESTSLDALREDFPRKSDEGLNPAQFLAVVRRHVEHGDFGFTA 55
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL2_ECTSI1.470e-1058.18EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:575071..575318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D8LTL2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.WD40 repeats
EggNOG OGs2CUZ5@1,2RPUY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size248
Cds size171
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932664.1876743-UTR-F-serratus_M_contig92:575070..5751471622932664.1876743-UTR-F-serratus_M_contig92:575070..575147Fucus serratus maleUTRF-serratus_M_contig92 575071..575147 +
1690964411.301367-UTR-F-serratus_M_contig92:575070..5751471690964411.301367-UTR-F-serratus_M_contig92:575070..575147Fucus serratus maleUTRF-serratus_M_contig92 575071..575147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932664.2179482-CDS-F-serratus_M_contig92:575147..5753181622932664.2179482-CDS-F-serratus_M_contig92:575147..575318Fucus serratus maleCDSF-serratus_M_contig92 575148..575318 +
1690964411.313711-CDS-F-serratus_M_contig92:575147..5753181690964411.313711-CDS-F-serratus_M_contig92:575147..575318Fucus serratus maleCDSF-serratus_M_contig92 575148..575318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20595.1prot_F-serratus_M_contig92.20595.1Fucus serratus malepolypeptideF-serratus_M_contig92 575148..575318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig92.20595.1

>prot_F-serratus_M_contig92.20595.1 ID=prot_F-serratus_M_contig92.20595.1|Name=mRNA_F-serratus_M_contig92.20595.1|organism=Fucus serratus male|type=polypeptide|length=57bp
MPSWGIDLVSELAESTTLDVVRHDFPRKSDEGLNPTQVGSRLRDCGFSAF
LRYFAQ*
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mRNA from alignment at F-serratus_M_contig92:575071..575318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig92.20595.1 ID=mRNA_F-serratus_M_contig92.20595.1|Name=mRNA_F-serratus_M_contig92.20595.1|organism=Fucus serratus male|type=mRNA|length=248bp|location=Sequence derived from alignment at F-serratus_M_contig92:575071..575318+ (Fucus serratus male)
CCACTGGGGCGGAGAACAGTACACCATCCAAGAACTTGGCGCGCTCCCAT
CCGTAGCCGAAGGCACTCACCGCGCTGATGCCATCGTGGGGCATTGACCT
TGTCAGCGAACTTGCCGAGTCGACTACTCTAGATGTCGTTCGGCATGATT
TTCCTAGAAAAAGCGACGAAGGTCTTAATCCGACCCAGGTAGGATCGCGC
TTGCGAGATTGCGGATTCTCAGCTTTTTTGCGGTACTTTGCTCAATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig92:575071..575318+

>mRNA_F-serratus_M_contig92.20595.1 ID=mRNA_F-serratus_M_contig92.20595.1|Name=mRNA_F-serratus_M_contig92.20595.1|organism=Fucus serratus male|type=CDS|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig92:575071..575318+ (Fucus serratus male)
ATGCCATCGTGGGGCATTGACCTTGTCAGCGAACTTGCCGAGTCGACTAC
TCTAGATGTCGTTCGGCATGATTTTCCTAGAAAAAGCGACGAAGGTCTTA
ATCCGACCCAGGTAGGATCGCGCTTGCGAGATTGCGGATTCTCAGCTTTT
TTGCGGTACTTTGCTCAATGAATGCCATCGTGGGGCATTGACCTTGTCAG
CGAACTTGCCGAGTCGACTACTCTAGATGTCGTTCGGCATGATTTTCCTA
GAAAAAGCGACGAAGGTCTTAATCCGACCCAGGTAGGATCGCGCTTGCGA
GATTGCGGATTCTCAGCTTTTTTGCGGTACTTTGCTCAATGA
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