mRNA_F-serratus_M_contig92.20594.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig92.20594.1
Unique NamemRNA_F-serratus_M_contig92.20594.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:573746..574809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size456
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20594.1prot_F-serratus_M_contig92.20594.1Fucus serratus malepolypeptideF-serratus_M_contig92 573746..574809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932661.8410673-CDS-F-serratus_M_contig92:573745..5737751622932661.8410673-CDS-F-serratus_M_contig92:573745..573775Fucus serratus maleCDSF-serratus_M_contig92 573746..573775 -
1690964409.9789546-CDS-F-serratus_M_contig92:573745..5737751690964409.9789546-CDS-F-serratus_M_contig92:573745..573775Fucus serratus maleCDSF-serratus_M_contig92 573746..573775 -
1622932661.8626585-CDS-F-serratus_M_contig92:574035..5743241622932661.8626585-CDS-F-serratus_M_contig92:574035..574324Fucus serratus maleCDSF-serratus_M_contig92 574036..574324 -
1690964409.9884949-CDS-F-serratus_M_contig92:574035..5743241690964409.9884949-CDS-F-serratus_M_contig92:574035..574324Fucus serratus maleCDSF-serratus_M_contig92 574036..574324 -
1622932661.8753123-CDS-F-serratus_M_contig92:574492..5745881622932661.8753123-CDS-F-serratus_M_contig92:574492..574588Fucus serratus maleCDSF-serratus_M_contig92 574493..574588 -
1690964409.9993258-CDS-F-serratus_M_contig92:574492..5745881690964409.9993258-CDS-F-serratus_M_contig92:574492..574588Fucus serratus maleCDSF-serratus_M_contig92 574493..574588 -
1622932661.8896663-CDS-F-serratus_M_contig92:574768..5748091622932661.8896663-CDS-F-serratus_M_contig92:574768..574809Fucus serratus maleCDSF-serratus_M_contig92 574769..574809 -
1690964410.0089273-CDS-F-serratus_M_contig92:574768..5748091690964410.0089273-CDS-F-serratus_M_contig92:574768..574809Fucus serratus maleCDSF-serratus_M_contig92 574769..574809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig92.20594.1

>prot_F-serratus_M_contig92.20594.1 ID=prot_F-serratus_M_contig92.20594.1|Name=mRNA_F-serratus_M_contig92.20594.1|organism=Fucus serratus male|type=polypeptide|length=152bp
DRWLQHAFSRRRNRKPPSGITSSPYSKHFKQATSTRDRRSSPKDPSSISR
RRDNNANWSSLPGVSHSHVKQHHGHVIATSRKNRRRHDDPRETGGRRVAA
MSAGFVELEGEVKQMEAKDLAGKKKILPFMDKLAFIEIALRQRGMPSRDG
LA
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mRNA from alignment at F-serratus_M_contig92:573746..574809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig92.20594.1 ID=mRNA_F-serratus_M_contig92.20594.1|Name=mRNA_F-serratus_M_contig92.20594.1|organism=Fucus serratus male|type=mRNA|length=1064bp|location=Sequence derived from alignment at F-serratus_M_contig92:573746..574809- (Fucus serratus male)
GATCGATGGCTGCAACACGCCTTTTCCCGAAGGAGGAACAGGTACCGCTT
ATCATACCGAAGAAGCGAGTTATAATTCTTAACTATATCAACAGCCGTAG
TAATGATACATCGTTGCTTACCGTCAGGACTTGCTTGGATACCAATACAA
AAAGTACCATCGCTGAGCTATATCCGGAAATGAAGTGAGAGACCCTCTGT
CGAACGCTTATTCTGGCGCAGGAAACCTCCCTCTGGCATAACATCGAGTC
CATATAGCAAACACTTCAAGCAAGCAACATCAACACGGGATAGGAGATCT
TCGCCCAAGGATCCGAGGTGGGCAGCCCGAGATACGTTTACGTCGCGATG
AGTGCCAATGGTCGAAGACAAATAAAATACCATGTGTACACTGTTCACGA
TGATACCAGGGGGCTCTAAAGCGATAATTGTATTGTATCAGTGTATCCAA
CTCACGAGCTCCTCACCACCTACAATTGATGGCAGCTCTATCTCGAGGCG
AAGAGACAATAACGCCAATTGGTCATCACTGCCAGGCGTTAGCCACTCAC
ATGTAAAACAGCACCATGGGCACGTCATTGCTACATCTCGAAAGAACCGC
CGACGTCATGATGATCCAAGGGAAACGGGGGGTCGACGAGTGGCGGCGAT
GTCCGCCGGTTTTGTTGAGCTGGAGGGGGAAGTAAAACAGATGGAGGCTA
AGGACTTGGCCGGAAAAAAAAAGATCCTGCCTTTCATGGACAAGCTCGCC
TTTATCGAGATTGCTCTAAGACAGGTGGGGGATGATGATAGTCTATAAGA
CGCTTCAGGGTAACCGGCATGATAAACGAGGAGAATCCTTCACAATTATA
GCGATGCTAGTGTTGTTTTTCACTCGATAGACATACCTTGGCTTGATCCC
TCGCTCTGAGTCGAAACCGAACACAATGAGTCAAAGCCGAACACAACGAG
CATATCGTATCGCGAAAAGCGAATTATTTAAGGAATCGCCGTTTCTCTTA
CCTACACCCTACCCGCTGTCTATGTCATCGATAGAGGGGAATGCCCAGCA
GAGATGGTTTGGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig92:573746..574809-

>mRNA_F-serratus_M_contig92.20594.1 ID=mRNA_F-serratus_M_contig92.20594.1|Name=mRNA_F-serratus_M_contig92.20594.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig92:573746..574809- (Fucus serratus male)
GATCGATGGCTGCAACACGCCTTTTCCCGAAGGAGGAACAGGATCGATGG
CTGCAACACGCCTTTTCCCGAAGGAGGAACAGGAAACCTCCCTCTGGCAT
AACATCGAGTCCATATAGCAAACACTTCAAGCAAGCAACATCAACACGGG
ATAGGAGATCTTCGCCCAAGGATCCGAGGAAACCTCCCTCTGGCATAACA
TCGAGTCCATATAGCAAACACTTCAAGCAAGCAACATCAACACGGGATAG
GAGATCTTCGCCCAAGGATCCGAGCTCTATCTCGAGGCGAAGAGACAATA
ACGCCAATTGGTCATCACTGCCAGGCGTTAGCCACTCACATGTAAAACAG
CACCATGGGCACGTCATTGCTACATCTCGAAAGAACCGCCGACGTCATGA
TGATCCAAGGGAAACGGGGGGTCGACGAGTGGCGGCGATGTCCGCCGGTT
TTGTTGAGCTGGAGGGGGAAGTAAAACAGATGGAGGCTAAGGACTTGGCC
GGAAAAAAAAAGATCCTGCCTTTCATGGACAAGCTCGCCTTTATCGAGAT
TGCTCTAAGACAGCTCTATCTCGAGGCGAAGAGACAATAACGCCAATTGG
TCATCACTGCCAGGCGTTAGCCACTCACATGTAAAACAGCACCATGGGCA
CGTCATTGCTACATCTCGAAAGAACCGCCGACGTCATGATGATCCAAGGG
AAACGGGGGGTCGACGAGTGGCGGCGATGTCCGCCGGTTTTGTTGAGCTG
GAGGGGGAAGTAAAACAGATGGAGGCTAAGGACTTGGCCGGAAAAAAAAA
GATCCTGCCTTTCATGGACAAGCTCGCCTTTATCGAGATTGCTCTAAGAC
AGAGGGGAATGCCCAGCAGAGATGGTTTGGCAAGGGGAATGCCCAGCAGA
GATGGTTTGGCA
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