mRNA_F-serratus_M_contig92.20591.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig92.20591.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI) HSP 1 Score: 268 bits (686), Expect = 9.630e-80 Identity = 139/225 (61.78%), Postives = 162/225 (72.00%), Query Frame = 2
Query: 335 MGNRLAADPTVQTAILNDLVRHSRRVPQGRRNINPSLQSPPGDERGLARLVDMLDSEEEAPNASERSRGTSGNRGSVHPPIRPDRRGFFDYDNEGSLQHLHLEPQVSDDWRIAYTPAQDRDWQPWNEEETKDSASESDLSGSRLSDRQLGCSCRKCHNSKEDISL---DEVASEGTCWKEILAEYECDICFEVLVGVHVLDNCGHHFCGACMERWIGKTSQENAP 1000
MG+RLAA P VQ AIL+DLV RRVP GRR I+P+LQ PPG+ERGLARLVDMLD EEE+ + S R+ + R S H ++ DRRG FDYD+E L HLHL+P+VS + Y Q WQPW EEE D SES LS SRLSD +LGCSC+KCH S +SL +E A EGTCWK++LAE+ECDICF+VLVGVHVLDNCGH FCGACMERWI Q P
Sbjct: 1 MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARLVDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHLHLDPRVSAELEGVYAEVQADGWQPWREEEKLD-GSESGLSSSRLSDGRLGCSCKKCHASS-GLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECP 223
BLAST of mRNA_F-serratus_M_contig92.20591.1 vs. uniprot
Match: A0A4S8MSH8_DENBC (RING/U-box n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MSH8_DENBC) HSP 1 Score: 56.2 bits (134), Expect = 4.930e-5 Identity = 31/91 (34.07%), Postives = 40/91 (43.96%), Query Frame = 2
Query: 767 SDRQLGCSCRKCHNSKEDISLDEVASEGTCWKEILAEYECDICFEVLVGVHVLDNCGHHFCGACMERWIGKTSQENAPCAGHRSTSSCLYE 1039
S R+ CS N K DE+ + + E C ICF++LVG H+L+ CGH CG C WI Q P T C Y+
Sbjct: 64 SKRRRSCSPSVFPNKKAKAKQDELLDD------LSDEISCPICFDLLVGAHLLNPCGHTLCGPCSYTWITLKKQTTCPVC---RTKCCHYK 145 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig92.20591.1 >prot_F-serratus_M_contig92.20591.1 ID=prot_F-serratus_M_contig92.20591.1|Name=mRNA_F-serratus_M_contig92.20591.1|organism=Fucus serratus male|type=polypeptide|length=341bp MWNSHGRSLITRTGPEAAAAITTRYQDQTRSGSNNGSEEELTQPISASEVback to top mRNA from alignment at F-serratus_M_contig92:416618..439066- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig92.20591.1 ID=mRNA_F-serratus_M_contig92.20591.1|Name=mRNA_F-serratus_M_contig92.20591.1|organism=Fucus serratus male|type=mRNA|length=22449bp|location=Sequence derived from alignment at F-serratus_M_contig92:416618..439066- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig92:416618..439066- >mRNA_F-serratus_M_contig92.20591.1 ID=mRNA_F-serratus_M_contig92.20591.1|Name=mRNA_F-serratus_M_contig92.20591.1|organism=Fucus serratus male|type=CDS|length=2046bp|location=Sequence derived from alignment at F-serratus_M_contig92:416618..439066- (Fucus serratus male)back to top |