mRNA_F-serratus_M_contig92.20590.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig92.20590.1
Unique NamemRNA_F-serratus_M_contig92.20590.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig92.20590.1 vs. uniprot
Match: A0A6H5JI45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI45_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.380e-8
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 2 
Query:  179 AEGRTGSSMWQTPGLRGQGGFPGARQEQEATKGGGGVYDTRGGRLAERAGKMRALGALDMMQVIGTFSDSESADEARELSPRGRRTMSPRAQSLIAEGRPTSRS 490
            ++   GS++W +         P AR     + GG G  + R G LA R+GKMRALG LD+MQV+GTFSDSES  +  ++        SPRA++  A   P  +S
Sbjct: 1798 SDSSLGSNLWCSG--------PFARSTFGKSMGGQGADEARDGLLATRSGKMRALGTLDLMQVVGTFSDSESPSDDIDIEE-----TSPRARAAAASNSPRPKS 1888
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI45_9PHAE3.380e-839.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:291574..292501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size661
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20590.1prot_F-serratus_M_contig92.20590.1Fucus serratus malepolypeptideF-serratus_M_contig92 291607..292299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932661.7325306-UTR-F-serratus_M_contig92:291573..2916061622932661.7325306-UTR-F-serratus_M_contig92:291573..291606Fucus serratus maleUTRF-serratus_M_contig92 291574..291606 -
1690964409.9368305-UTR-F-serratus_M_contig92:291573..2916061690964409.9368305-UTR-F-serratus_M_contig92:291573..291606Fucus serratus maleUTRF-serratus_M_contig92 291574..291606 -
1622932661.7938967-UTR-F-serratus_M_contig92:292299..2925011622932661.7938967-UTR-F-serratus_M_contig92:292299..292501Fucus serratus maleUTRF-serratus_M_contig92 292300..292501 -
1690964409.9696736-UTR-F-serratus_M_contig92:292299..2925011690964409.9696736-UTR-F-serratus_M_contig92:292299..292501Fucus serratus maleUTRF-serratus_M_contig92 292300..292501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932661.751252-CDS-F-serratus_M_contig92:291606..2918701622932661.751252-CDS-F-serratus_M_contig92:291606..291870Fucus serratus maleCDSF-serratus_M_contig92 291607..291870 -
1690964409.951581-CDS-F-serratus_M_contig92:291606..2918701690964409.951581-CDS-F-serratus_M_contig92:291606..291870Fucus serratus maleCDSF-serratus_M_contig92 291607..291870 -
1622932661.7738192-CDS-F-serratus_M_contig92:292137..2922991622932661.7738192-CDS-F-serratus_M_contig92:292137..292299Fucus serratus maleCDSF-serratus_M_contig92 292138..292299 -
1690964409.9609983-CDS-F-serratus_M_contig92:292137..2922991690964409.9609983-CDS-F-serratus_M_contig92:292137..292299Fucus serratus maleCDSF-serratus_M_contig92 292138..292299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig92.20590.1

>prot_F-serratus_M_contig92.20590.1 ID=prot_F-serratus_M_contig92.20590.1|Name=mRNA_F-serratus_M_contig92.20590.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MWQTPGLRGQGGFPGARQEQEATKGGGGVYDTRGGRLAERAGKMRALGAL
DMMQVIGTFSDSESADEARELSPRGRRTMSPRAQSLIAEGRPTSRSTWLR
RIPPRADAVTITQHSSRAEKPSVSSGGAGDPRSNVRGGWDR*
back to top

mRNA from alignment at F-serratus_M_contig92:291574..292501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig92.20590.1 ID=mRNA_F-serratus_M_contig92.20590.1|Name=mRNA_F-serratus_M_contig92.20590.1|organism=Fucus serratus male|type=mRNA|length=928bp|location=Sequence derived from alignment at F-serratus_M_contig92:291574..292501- (Fucus serratus male)
GAGGGGAGGACGCGCTATCGGCGTGGGCCGTGGCCCGAGAACGCGCTGGG
GCGTACATCAAAGAGAAGCAGCACAAGTTCTTTGCGGGCTCTGGCTCCGT
TGTCGATGGAGGCAGAGGGGCAGGTGGTGACAGCGGTGATATCCACCGTG
ACAGAGACTCAAAAAGGAGACGATCCAGGCAGAAGGGCGAACAGGCAGCA
GTATGTGGCAAACACCTGGACTTCGTGGGCAGGGCGGCTTCCCGGGCGCG
CGGCAGGAGCAGGAGGCGACGAAGGGAGGTGGGGGAGTATATGACACGCG
CGGAGGGCGTCTGGCTGAGAGAGCGGGGAAGATGAGGGCCTTGGGCGCCC
TGGATATGATGCAGGTGATGATGATGTTGAGGCTTCGTGTCAAATACCGA
GTATTGACTCTCGCGTAACGTCTCCTCTCGTGTCGATACAACCCACCGAC
TTTCTCCTGTAAAATACTTACCGTATTCAACAGTAGAGCTAGCTCTACCG
TTCGTTATTCCACTGCTTGTGCTGTACTGGTAAGATTTAGTTAACTTTGA
CTTGACTTGACTTCGCCTTGGCTTTGCCTTTACTTGTACGGTGACGTATC
TCCTTTCCTGTGTTCTATGATCTTTATCCAGGTCATCGGGACCTTCTCCG
ACTCCGAAAGTGCAGATGAGGCGAGAGAGCTATCGCCACGGGGAAGACGG
ACGATGTCCCCTCGGGCACAATCCCTTATCGCCGAGGGTAGACCTACCTC
CCGATCGACGTGGTTGCGGCGTATACCGCCGCGGGCAGACGCGGTCACCA
TTACCCAGCATTCAAGCAGAGCGGAAAAGCCCTCAGTTTCAAGTGGGGGC
GCCGGTGACCCCAGATCGAACGTTCGAGGCGGGTGGGACAGGTGAGGGAG
GTGGATCTCCTGGGGGGAGAGTAATCGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig92:291574..292501-

>mRNA_F-serratus_M_contig92.20590.1 ID=mRNA_F-serratus_M_contig92.20590.1|Name=mRNA_F-serratus_M_contig92.20590.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig92:291574..292501- (Fucus serratus male)
ATGTGGCAAACACCTGGACTTCGTGGGCAGGGCGGCTTCCCGGGCGCGCG
GCAGGAGCAGGAGGCGACGAAGGGAGGTGGGGGAGTATATGACACGCGCG
GAGGGCGTCTGGCTGAGAGAGCGGGGAAGATGAGGGCCTTGGGCGCCCTG
GATATGATGCAGATGTGGCAAACACCTGGACTTCGTGGGCAGGGCGGCTT
CCCGGGCGCGCGGCAGGAGCAGGAGGCGACGAAGGGAGGTGGGGGAGTAT
ATGACACGCGCGGAGGGCGTCTGGCTGAGAGAGCGGGGAAGATGAGGGCC
TTGGGCGCCCTGGATATGATGCAGGTCATCGGGACCTTCTCCGACTCCGA
AAGTGCAGATGAGGCGAGAGAGCTATCGCCACGGGGAAGACGGACGATGT
CCCCTCGGGCACAATCCCTTATCGCCGAGGGTAGACCTACCTCCCGATCG
ACGTGGTTGCGGCGTATACCGCCGCGGGCAGACGCGGTCACCATTACCCA
GCATTCAAGCAGAGCGGAAAAGCCCTCAGTTTCAAGTGGGGGCGCCGGTG
ACCCCAGATCGAACGTTCGAGGCGGGTGGGACAGGTGAGTCATCGGGACC
TTCTCCGACTCCGAAAGTGCAGATGAGGCGAGAGAGCTATCGCCACGGGG
AAGACGGACGATGTCCCCTCGGGCACAATCCCTTATCGCCGAGGGTAGAC
CTACCTCCCGATCGACGTGGTTGCGGCGTATACCGCCGCGGGCAGACGCG
GTCACCATTACCCAGCATTCAAGCAGAGCGGAAAAGCCCTCAGTTTCAAG
TGGGGGCGCCGGTGACCCCAGATCGAACGTTCGAGGCGGGTGGGACAGGT
GA
back to top