mRNA_F-serratus_M_contig92.20585.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig92.20585.1
Unique NamemRNA_F-serratus_M_contig92.20585.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.700e-23
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:  154 TALLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            T LL +HLDDQTDSKSLLGA ACTD+PGEFAW+PGALTRA AAGTWVLIEDLDR
Sbjct:  462 TPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAAAAGTWVLIEDLDR 515
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.710e-23
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:  154 TALLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            TALL +HLDDQTDSKSLLGA ACTD+PGEFAW+PGALT A AAGTWVLIEDLDR
Sbjct:  509 TALLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTHAAAAGTWVLIEDLDR 562
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A024U2P5_9STRA (Midasin n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2P5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.850e-18
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:  151 RTALLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            RT L+ +HLDDQ DSK+L+G+  CTDIPGEF+WQPGALTRA   G WV+IED+DR
Sbjct:  300 RTNLVELHLDDQMDSKTLVGSYVCTDIPGEFSWQPGALTRAVTEGRWVVIEDIDR 354
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A0W8D5B3_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D5B3_PHYNI)

HSP 1 Score: 85.9 bits (211), Expect = 2.390e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:  145 SRRTALLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            S  + ++ +HLDDQ DSK+LLG+  CTD+PGEFAWQPGALT A  AG WV+IED+DR
Sbjct:  383 SGNSDMVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDR 439
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: W2Q5P2_PHYPN (VWFA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5P2_PHYPN)

HSP 1 Score: 85.9 bits (211), Expect = 2.490e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:  145 SRRTALLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            S  + ++ +HLDDQ DSK+LLG+  CTD+PGEFAWQPGALT A  AG WV+IED+DR
Sbjct:  383 SGNSDMVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDR 439
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A1W0AAX6_9STRA (Midasin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAX6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.640e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  160 LLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            L+ +HLDDQ DSK+LLG+  CTD+PGEF WQPGALT+A   G WVLIED+DR
Sbjct:  288 LVELHLDDQMDSKTLLGSYVCTDVPGEFTWQPGALTQAVTEGRWVLIEDIDR 339
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: T0QRP1_SAPDV (Midasin n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QRP1_SAPDV)

HSP 1 Score: 85.1 bits (209), Expect = 4.640e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  160 LLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            L+ +HLDDQ DSK+LLG+  CTD+PGEF WQPGALT+A   G WVLIED+DR
Sbjct:  293 LVELHLDDQMDSKTLLGSYVCTDVPGEFTWQPGALTQAVTEGRWVLIEDIDR 344
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A1V9YN45_9STRA (Midasin (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN45_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.640e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  160 LLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            L+ +HLDDQ DSK+LLG+  CTD+PGEF WQPGALT+A   G WVLIED+DR
Sbjct:  352 LVELHLDDQMDSKTLLGSYVCTDVPGEFTWQPGALTQAVTEGRWVLIEDIDR 403
[Close]
BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A3M6VQJ5_9STRA (VWFA domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQJ5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.640e-17
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  127 CAKQHASRRTALLG-------VHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            C K    R  A L        +HLDDQ DSK+LLG+  CTD+PGEF WQPGALT A  AG WVLIED+DR
Sbjct:  365 CGKTATIRELARLSGNDDMVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVLIEDIDR 434
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BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Match: A0A662YAW0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAW0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.040e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  160 LLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLIEDLDR 315
            L+ +HLDDQ DSK+LLG+  CTDIPGEF WQPGALT A  AG WV++ED+DR
Sbjct:  404 LVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLAGRWVVVEDIDR 455
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig92.20585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL29_ECTSI3.700e-2387.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB27_9PHAE3.710e-2387.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024U2P5_9STRA3.850e-1869.09Midasin n=2 Tax=Aphanomyces invadans TaxID=157072 ... [more]
A0A0W8D5B3_PHYNI2.390e-1764.91Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
W2Q5P2_PHYPN2.490e-1764.91VWFA domain-containing protein n=9 Tax=Phytophthor... [more]
A0A1W0AAX6_9STRA4.640e-1769.23Midasin n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
T0QRP1_SAPDV4.640e-1769.23Midasin n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QRP... [more]
A0A1V9YN45_9STRA4.640e-1769.23Midasin (Fragment) n=1 Tax=Achlya hypogyna TaxID=1... [more]
A0A3M6VQJ5_9STRA4.640e-1758.57VWFA domain-containing protein n=2 Tax=Peronospora... [more]
A0A662YAW0_9STRA6.040e-1769.23Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig92contigF-serratus_M_contig92:206307..206622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue9.8e-20
Seed eggNOG ortholog2880.D7FL29
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932662.5758445-CDS-F-serratus_M_contig92:206306..2066211622932662.5758445-CDS-F-serratus_M_contig92:206306..206621Fucus serratus maleCDSF-serratus_M_contig92 206307..206621 +
1690964410.3785443-CDS-F-serratus_M_contig92:206306..2066211690964410.3785443-CDS-F-serratus_M_contig92:206306..206621Fucus serratus maleCDSF-serratus_M_contig92 206307..206621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig92.20585.1prot_F-serratus_M_contig92.20585.1Fucus serratus malepolypeptideF-serratus_M_contig92 206307..206621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig92.20585.1

>prot_F-serratus_M_contig92.20585.1 ID=prot_F-serratus_M_contig92.20585.1|Name=mRNA_F-serratus_M_contig92.20585.1|organism=Fucus serratus male|type=polypeptide|length=105bp
RLASVSFQLPPHRETYYFSRWRCPSIGPCFSTAQRDRVQAFSCAKQHASR
RTALLGVHLDDQTDSKSLLGAQACTDIPGEFAWQPGALTRATAAGTWVLI
EDLDR
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mRNA from alignment at F-serratus_M_contig92:206307..206622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig92.20585.1 ID=mRNA_F-serratus_M_contig92.20585.1|Name=mRNA_F-serratus_M_contig92.20585.1|organism=Fucus serratus male|type=mRNA|length=316bp|location=Sequence derived from alignment at F-serratus_M_contig92:206307..206622+ (Fucus serratus male)
AGACTCGCCAGCGTTTCGTTTCAACTGCCTCCGCATCGAGAAACCTATTA
TTTTAGTCGCTGGCGATGTCCGTCGATAGGCCCGTGCTTCTCCACGGCCC
AGCGGGATCGGGTACAAGCCTTCTCGTGCGCAAAGCAGCACGCCTCGCGA
CGGACGGCTCTTCTGGGGGTCCACCTTGACGACCAGACGGACAGCAAATC
TCTCCTGGGGGCGCAAGCGTGCACGGACATCCCAGGAGAGTTCGCTTGGC
AACCGGGGGCTTTGACCCGTGCCACGGCCGCTGGAACGTGGGTACTCATC
GAGGATCTTGACCGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig92:206307..206622+

>mRNA_F-serratus_M_contig92.20585.1 ID=mRNA_F-serratus_M_contig92.20585.1|Name=mRNA_F-serratus_M_contig92.20585.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig92:206307..206622+ (Fucus serratus male)
AGACTCGCCAGCGTTTCGTTTCAACTGCCTCCGCATCGAGAAACCTATTA
TTTTAGTCGCTGGCGATGTCCGTCGATAGGCCCGTGCTTCTCCACGGCCC
AGCGGGATCGGGTACAAGCCTTCTCGTGCGCAAAGCAGCACGCCTCGCGA
CGGACGGCTCTTCTGGGGGTCCACCTTGACGACCAGACGGACAGCAAATC
TCTCCTGGGGGCGCAAGCGTGCACGGACATCCCAGGAGAGTTCGCTTGGC
AACCGGGGGCTTTGACCCGTGCCACGGCCGCTGGAACGTGGGTACTCATC
GAGGATCTTGACCGCAGACTCGCCAGCGTTTCGTTTCAACTGCCTCCGCA
TCGAGAAACCTATTATTTTAGTCGCTGGCGATGTCCGTCGATAGGCCCGT
GCTTCTCCACGGCCCAGCGGGATCGGGTACAAGCCTTCTCGTGCGCAAAG
CAGCACGCCTCGCGACGGACGGCTCTTCTGGGGGTCCACCTTGACGACCA
GACGGACAGCAAATCTCTCCTGGGGGCGCAAGCGTGCACGGACATCCCAG
GAGAGTTCGCTTGGCAACCGGGGGCTTTGACCCGTGCCACGGCCGCTGGA
ACGTGGGTACTCATCGAGGATCTTGACCGC
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