mRNA_F-serratus_M_contig918.20576.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig918.20576.1
Unique NamemRNA_F-serratus_M_contig918.20576.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig918.20576.1 vs. uniprot
Match: D8LSK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK9_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.760e-17
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   13 RVSSVFAAREERCAASEEIRLLQQRKADASVRVAGERLSNLEQRLELEVLRLERLLDRERILELLRLTDPDSQDRPPAGSSE 258
            + SSV  AREE+  ASEEIR L  RK+DA VR+  ERLSNLE  LEL VLRLERLLDRERILELLRLTDPD  +   A   E
Sbjct:  123 KASSVREAREEQRLASEEIRTLHNRKSDAKVRLQAERLSNLEHGLELGVLRLERLLDRERILELLRLTDPDRAETTRAAGME 204
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig918.20576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSK9_ECTSI5.760e-1767.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig918contigF-serratus_M_contig918:295037..295985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size319
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig918.20576.1prot_F-serratus_M_contig918.20576.1Fucus serratus malepolypeptideF-serratus_M_contig918 295037..295985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932660.0540981-CDS-F-serratus_M_contig918:295036..2951641622932660.0540981-CDS-F-serratus_M_contig918:295036..295164Fucus serratus maleCDSF-serratus_M_contig918 295037..295164 +
1690964409.2272573-CDS-F-serratus_M_contig918:295036..2951641690964409.2272573-CDS-F-serratus_M_contig918:295036..295164Fucus serratus maleCDSF-serratus_M_contig918 295037..295164 +
1622932660.0733395-CDS-F-serratus_M_contig918:295560..2956231622932660.0733395-CDS-F-serratus_M_contig918:295560..295623Fucus serratus maleCDSF-serratus_M_contig918 295561..295623 +
1690964409.2386448-CDS-F-serratus_M_contig918:295560..2956231690964409.2386448-CDS-F-serratus_M_contig918:295560..295623Fucus serratus maleCDSF-serratus_M_contig918 295561..295623 +
1622932660.0904496-CDS-F-serratus_M_contig918:295858..2959851622932660.0904496-CDS-F-serratus_M_contig918:295858..295985Fucus serratus maleCDSF-serratus_M_contig918 295859..295985 +
1690964409.2489684-CDS-F-serratus_M_contig918:295858..2959851690964409.2489684-CDS-F-serratus_M_contig918:295858..295985Fucus serratus maleCDSF-serratus_M_contig918 295859..295985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig918.20576.1

>prot_F-serratus_M_contig918.20576.1 ID=prot_F-serratus_M_contig918.20576.1|Name=mRNA_F-serratus_M_contig918.20576.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MVGRRVSSVFAAREERCAASEEIRLLQQRKADASVRVAGERLSNLEQRLE
LEVLRLERLLDRERILELLRLTDPDSQDRPPAGSSEDEEVSEEAIAQLED
RVEKAE
back to top

mRNA from alignment at F-serratus_M_contig918:295037..295985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig918.20576.1 ID=mRNA_F-serratus_M_contig918.20576.1|Name=mRNA_F-serratus_M_contig918.20576.1|organism=Fucus serratus male|type=mRNA|length=949bp|location=Sequence derived from alignment at F-serratus_M_contig918:295037..295985+ (Fucus serratus male)
ATGGTAGGGCGGCGCGTGTCCTCCGTGTTCGCCGCCCGCGAGGAGCGGTG
CGCGGCCAGCGAGGAGATACGCTTGCTGCAGCAGAGAAAAGCGGACGCCT
CCGTGAGGGTGGCTGGGGAGAGGTTGAGGTGCGCTGCTGTCCTCGTACCT
TTTCTGTTGTTGTTGCATCGTCTATGTAGTTAAACAACTTGTTTGTAACG
GTTGTCTTTCTTTGCTTTTTTCTTATTTGCTCCTTGAAATATGCGCATGT
TGTAAACGAACGACTGACGCTGCCCAGAGCCGTGCTCTGTCGTGTACAGT
GCGTGGTGGCGTTGGTTGAAGACCGGCTGGCTGAAAAAGGTGTCGGGAGT
GCAGCAGTTAACTTGTGCGGTGCCACGCCCAAGGGGGGTTGAATGTGTCG
TCGATTGCAGAGCGATCTCGTGGCCTATAGAGCTAATCGATGACATTTCC
CGGTTGCACTCTCGAATCGCATCGGTGCTCGGGTGTGCTTGCGAACCGTC
TCGCTCCATCATCACCGTCAAAAGCAACCTGGAACAGAGGCTCGAGCTCG
AAGTTTTACGGCTGGAGAGGCTTCTCGACCGCGAAAGGTAGCTAGCTACA
AAGGCTACGGCACCGGTGCGGCGCGGCGTCTGCTGTACAGTAATTGGATT
ATTTACATGCACCCTTGACGCAATGCAGCCGCAATCCGGCGCTACCATGC
TTTTCATTCTATGCTTCTTTGTTTGTTATTATAGTTAGTGTGCGTGTGCA
TTCTTGGTGTTGTTTTTCACGCGTTGGGAAATGGAAATTCTCGCCTCGAC
ATTTTCTGCTTCACGCCTCCAGGATTCTGGAACTCCTGCGCCTGACGGAT
CCTGATTCGCAAGACCGTCCGCCGGCGGGCAGCAGCGAGGACGAAGAGGT
CTCGGAGGAAGCGATCGCTCAGCTCGAGGACCGAGTGGAGAAAGCCGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig918:295037..295985+

>mRNA_F-serratus_M_contig918.20576.1 ID=mRNA_F-serratus_M_contig918.20576.1|Name=mRNA_F-serratus_M_contig918.20576.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig918:295037..295985+ (Fucus serratus male)
ATGGTAGGGCGGCGCGTGTCCTCCGTGTTCGCCGCCCGCGAGGAGCGGTG
CGCGGCCAGCGAGGAGATACGCTTGCTGCAGCAGAGAAAAGCGGACGCCT
CCGTGAGGGTGGCTGGGGAGAGGTTGAGATGGTAGGGCGGCGCGTGTCCT
CCGTGTTCGCCGCCCGCGAGGAGCGGTGCGCGGCCAGCGAGGAGATACGC
TTGCTGCAGCAGAGAAAAGCGGACGCCTCCGTGAGGGTGGCTGGGGAGAG
GTTGAGCAACCTGGAACAGAGGCTCGAGCTCGAAGTTTTACGGCTGGAGA
GGCTTCTCGACCGCGAAAGCAACCTGGAACAGAGGCTCGAGCTCGAAGTT
TTACGGCTGGAGAGGCTTCTCGACCGCGAAAGGATTCTGGAACTCCTGCG
CCTGACGGATCCTGATTCGCAAGACCGTCCGCCGGCGGGCAGCAGCGAGG
ACGAAGAGGTCTCGGAGGAAGCGATCGCTCAGCTCGAGGACCGAGTGGAG
AAAGCCGAGGATTCTGGAACTCCTGCGCCTGACGGATCCTGATTCGCAAG
ACCGTCCGCCGGCGGGCAGCAGCGAGGACGAAGAGGTCTCGGAGGAAGCG
ATCGCTCAGCTCGAGGACCGAGTGGAGAAAGCCGAG
back to top