mRNA_F-serratus_M_contig918.20575.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig918.20575.1
Unique NamemRNA_F-serratus_M_contig918.20575.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig918.20575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig918contigF-serratus_M_contig918:180606..181071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig918.20575.1prot_F-serratus_M_contig918.20575.1Fucus serratus malepolypeptideF-serratus_M_contig918 180650..180964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.361674-UTR-F-serratus_M_contig918:180605..1806491622932659.361674-UTR-F-serratus_M_contig918:180605..180649Fucus serratus maleUTRF-serratus_M_contig918 180606..180649 +
1690964408.8161066-UTR-F-serratus_M_contig918:180605..1806491690964408.8161066-UTR-F-serratus_M_contig918:180605..180649Fucus serratus maleUTRF-serratus_M_contig918 180606..180649 +
1622932659.393586-UTR-F-serratus_M_contig918:180964..1810711622932659.393586-UTR-F-serratus_M_contig918:180964..181071Fucus serratus maleUTRF-serratus_M_contig918 180965..181071 +
1690964408.8465157-UTR-F-serratus_M_contig918:180964..1810711690964408.8465157-UTR-F-serratus_M_contig918:180964..181071Fucus serratus maleUTRF-serratus_M_contig918 180965..181071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932659.3775454-CDS-F-serratus_M_contig918:180649..1809641622932659.3775454-CDS-F-serratus_M_contig918:180649..180964Fucus serratus maleCDSF-serratus_M_contig918 180650..180964 +
1690964408.8353786-CDS-F-serratus_M_contig918:180649..1809641690964408.8353786-CDS-F-serratus_M_contig918:180649..180964Fucus serratus maleCDSF-serratus_M_contig918 180650..180964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig918.20575.1

>prot_F-serratus_M_contig918.20575.1 ID=prot_F-serratus_M_contig918.20575.1|Name=mRNA_F-serratus_M_contig918.20575.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MFGLGRHCHYTVPQIPKKQLSKNAKSRKRFPRNRQRDELVFLKKIQNAPR
PYLFTQATGKPRNRQNQQKRYAHPRGKLLYSTVMGRYHLHQLLQLTHPVV
IYSA*
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mRNA from alignment at F-serratus_M_contig918:180606..181071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig918.20575.1 ID=mRNA_F-serratus_M_contig918.20575.1|Name=mRNA_F-serratus_M_contig918.20575.1|organism=Fucus serratus male|type=mRNA|length=466bp|location=Sequence derived from alignment at F-serratus_M_contig918:180606..181071+ (Fucus serratus male)
ATCTATTTGGCGCCTTTATTCTCCATACCGTTCTTGCTTTACAGATGTTT
GGTCTAGGGAGGCATTGTCATTATACTGTACCTCAGATCCCGAAAAAACA
ATTAAGTAAAAATGCGAAGTCGAGAAAAAGGTTTCCCCGCAATCGACAAC
GGGATGAACTAGTCTTTTTGAAGAAAATACAGAACGCACCTAGACCTTAC
TTATTTACGCAAGCCACTGGGAAACCGAGAAACCGGCAAAACCAACAAAA
ACGGTATGCGCATCCTAGAGGAAAACTCCTGTACTCAACTGTCATGGGCC
GATACCATCTACATCAGCTCCTGCAACTTACCCACCCTGTCGTGATATAC
TCTGCGTAACAACACACACTAGATTGCGATTGGATAAAAACACGCCGCGT
TCGAGTTTTTACTGTAAGTTGAAACAAAACGTAAACGTTGTCTACTTCTT
CACTAAATTGCTCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig918:180606..181071+

>mRNA_F-serratus_M_contig918.20575.1 ID=mRNA_F-serratus_M_contig918.20575.1|Name=mRNA_F-serratus_M_contig918.20575.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig918:180606..181071+ (Fucus serratus male)
ATGTTTGGTCTAGGGAGGCATTGTCATTATACTGTACCTCAGATCCCGAA
AAAACAATTAAGTAAAAATGCGAAGTCGAGAAAAAGGTTTCCCCGCAATC
GACAACGGGATGAACTAGTCTTTTTGAAGAAAATACAGAACGCACCTAGA
CCTTACTTATTTACGCAAGCCACTGGGAAACCGAGAAACCGGCAAAACCA
ACAAAAACGGTATGCGCATCCTAGAGGAAAACTCCTGTACTCAACTGTCA
TGGGCCGATACCATCTACATCAGCTCCTGCAACTTACCCACCCTGTCGTG
ATATACTCTGCGTAAATGTTTGGTCTAGGGAGGCATTGTCATTATACTGT
ACCTCAGATCCCGAAAAAACAATTAAGTAAAAATGCGAAGTCGAGAAAAA
GGTTTCCCCGCAATCGACAACGGGATGAACTAGTCTTTTTGAAGAAAATA
CAGAACGCACCTAGACCTTACTTATTTACGCAAGCCACTGGGAAACCGAG
AAACCGGCAAAACCAACAAAAACGGTATGCGCATCCTAGAGGAAAACTCC
TGTACTCAACTGTCATGGGCCGATACCATCTACATCAGCTCCTGCAACTT
ACCCACCCTGTCGTGATATACTCTGCGTAA
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