mRNA_F-serratus_M_contig911.20538.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig911.20538.1
Unique NamemRNA_F-serratus_M_contig911.20538.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig911.20538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig911contigF-serratus_M_contig911:139553..140620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPOC1 centriolar protein homolog A
Ec32 orthologEc-21_003690.1
Exons2
Model size320
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig911.20538.1prot_F-serratus_M_contig911.20538.1Fucus serratus malepolypeptideF-serratus_M_contig911 139707..140620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932652.2307928-UTR-F-serratus_M_contig911:139552..1397061622932652.2307928-UTR-F-serratus_M_contig911:139552..139706Fucus serratus maleUTRF-serratus_M_contig911 139553..139706 +
1690964405.1105928-UTR-F-serratus_M_contig911:139552..1397061690964405.1105928-UTR-F-serratus_M_contig911:139552..139706Fucus serratus maleUTRF-serratus_M_contig911 139553..139706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932652.2553337-CDS-F-serratus_M_contig911:139706..1397881622932652.2553337-CDS-F-serratus_M_contig911:139706..139788Fucus serratus maleCDSF-serratus_M_contig911 139707..139788 +
1690964405.1243303-CDS-F-serratus_M_contig911:139706..1397881690964405.1243303-CDS-F-serratus_M_contig911:139706..139788Fucus serratus maleCDSF-serratus_M_contig911 139707..139788 +
1622932652.2755694-CDS-F-serratus_M_contig911:140537..1406201622932652.2755694-CDS-F-serratus_M_contig911:140537..140620Fucus serratus maleCDSF-serratus_M_contig911 140538..140620 +
1690964405.1352727-CDS-F-serratus_M_contig911:140537..1406201690964405.1352727-CDS-F-serratus_M_contig911:140537..140620Fucus serratus maleCDSF-serratus_M_contig911 140538..140620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig911.20538.1

>prot_F-serratus_M_contig911.20538.1 ID=prot_F-serratus_M_contig911.20538.1|Name=mRNA_F-serratus_M_contig911.20538.1|organism=Fucus serratus male|type=polypeptide|length=55bp
MRSAVGPKSRRISRTAVSQMDPTLRADRSSPHPSVTSASRSVQAPHSFPM
DPELE
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mRNA from alignment at F-serratus_M_contig911:139553..140620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig911.20538.1 ID=mRNA_F-serratus_M_contig911.20538.1|Name=mRNA_F-serratus_M_contig911.20538.1|organism=Fucus serratus male|type=mRNA|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig911:139553..140620+ (Fucus serratus male)
AAGACTTGCATTTAATCTTCTTCCTGGGGCGTTCGATACCGCCGTGGAAG
GTGAATTCGAACGAGATCGGAAGTTGACTTCCTCTGATACACTTTAACGT
TCCGAACCATCAATAAGATCGCTTCACGTATTCTCAAGGAGTTCAGCAGC
AACCATGAGGTCGGCCGTTGGTCCAAAATCCAGAAGGATCAGTCGGACTG
CAGTCTCTCAAATGGACCCCACTCTACGCGCAGACCGTGAGTATTCCGTT
ACAGCGATAGAAGAAAGATGAGATCATCGATGCACGAGGACATCTTGTGT
AGAGTTGTGCATTCTGCACTAACGGTTTACAGCAGTTCTACCGTTTGTTA
ATCTTGTCGTTTAAAGAAAATGCAAATGTGGCAGTTTGGATTTATGTACA
CAAAGTAGCTTGTAGCTTACCATCACACCCTCGTGTGTGAGTAGAGCTTT
GGCTCTGGAGCTAGCCTCGATCATTGTTCTGTCGCGATACTTCTCACTGA
GCATTGAACCCATGAAGAACTGGGAACAGGTTTCGGCCACCCGCTTTCTG
TGCGAATTTGGAGTCGATCATGTCGTGATCGCGCCGCTTCATTTACGTAC
GAACCGGGGTCCCCTTTCGGATCGTTGTCGAGAGGAGCTAGCTCTGTCAC
GAATGAGAACTTGCCCGTACACCTCAAGTTATTGACAACCCCAGTGCGGC
AAATTGCACGCACAAGAGCTCTAACTCGCATCAGTCGTCGAATTTCCTCA
ACAGCTTCAGTGACTCGGCAAGGCTACTGGCGAAAGCCATATCATTTCTC
AACGGGACGGCTTGTCTCGTCCAGTGATCCTTTTCCCGTTGTTGCTACAC
AGACCCCTCCCTCTCACGCAAGTAAAAATGAGTCGTCCTTCGATGGCGAG
GGCGTGCGTGACACGTTAAAGGTGACCCTCTCAACAAAGTCCCAATAACT
CCTGACAAGCACGCGTTTCCGCTGGGCGAAAGCAGGTAGCTCCCCGCATC
CTTCTGTTACAAGCGCAAGCCGAAGCGTGCAGGCCCCGCACTCCTTTCCG
ATGGATCCTGAGCTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig911:139553..140620+

>mRNA_F-serratus_M_contig911.20538.1 ID=mRNA_F-serratus_M_contig911.20538.1|Name=mRNA_F-serratus_M_contig911.20538.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig911:139553..140620+ (Fucus serratus male)
ATGAGGTCGGCCGTTGGTCCAAAATCCAGAAGGATCAGTCGGACTGCAGT
CTCTCAAATGGACCCCACTCTACGCGCAGACCATGAGGTCGGCCGTTGGT
CCAAAATCCAGAAGGATCAGTCGGACTGCAGTCTCTCAAATGGACCCCAC
TCTACGCGCAGACCGTAGCTCCCCGCATCCTTCTGTTACAAGCGCAAGCC
GAAGCGTGCAGGCCCCGCACTCCTTTCCGATGGATCCTGAGCTGGAGGTA
GCTCCCCGCATCCTTCTGTTACAAGCGCAAGCCGAAGCGTGCAGGCCCCG
CACTCCTTTCCGATGGATCCTGAGCTGGAG
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