mRNA_F-serratus_M_contig911.20536.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig911.20536.1
Unique NamemRNA_F-serratus_M_contig911.20536.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig911.20536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig911contigF-serratus_M_contig911:132307..135089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_003710.1
Exons3
Model size772
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig911.20536.1prot_F-serratus_M_contig911.20536.1Fucus serratus malepolypeptideF-serratus_M_contig911 132307..134200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932653.5513344-CDS-F-serratus_M_contig911:132306..1324501622932653.5513344-CDS-F-serratus_M_contig911:132306..132450Fucus serratus maleCDSF-serratus_M_contig911 132307..132450 -
1690964405.8162422-CDS-F-serratus_M_contig911:132306..1324501690964405.8162422-CDS-F-serratus_M_contig911:132306..132450Fucus serratus maleCDSF-serratus_M_contig911 132307..132450 -
1622932653.5653174-CDS-F-serratus_M_contig911:133921..1342001622932653.5653174-CDS-F-serratus_M_contig911:133921..134200Fucus serratus maleCDSF-serratus_M_contig911 133922..134200 -
1690964405.8277087-CDS-F-serratus_M_contig911:133921..1342001690964405.8277087-CDS-F-serratus_M_contig911:133921..134200Fucus serratus maleCDSF-serratus_M_contig911 133922..134200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932653.5797462-UTR-F-serratus_M_contig911:134200..1344271622932653.5797462-UTR-F-serratus_M_contig911:134200..134427Fucus serratus maleUTRF-serratus_M_contig911 134201..134427 -
1690964405.8379574-UTR-F-serratus_M_contig911:134200..1344271690964405.8379574-UTR-F-serratus_M_contig911:134200..134427Fucus serratus maleUTRF-serratus_M_contig911 134201..134427 -
1622932653.5972657-UTR-F-serratus_M_contig911:134968..1350891622932653.5972657-UTR-F-serratus_M_contig911:134968..135089Fucus serratus maleUTRF-serratus_M_contig911 134969..135089 -
1690964405.8481002-UTR-F-serratus_M_contig911:134968..1350891690964405.8481002-UTR-F-serratus_M_contig911:134968..135089Fucus serratus maleUTRF-serratus_M_contig911 134969..135089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig911.20536.1

>prot_F-serratus_M_contig911.20536.1 ID=prot_F-serratus_M_contig911.20536.1|Name=mRNA_F-serratus_M_contig911.20536.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MDPDQGPVDRLIALVSEGVSLSKRVLGNERQSARLGGRLSALKTPLWQLQ
ARVKTQAERPPDFIYTLSEEVSSSVDFMQELTDPDWWNQICRKDDAAVFR
DLNERLTAAVRGDRQFEAALNFPRAADEDRADRIVDFEHLQ
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mRNA from alignment at F-serratus_M_contig911:132307..135089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig911.20536.1 ID=mRNA_F-serratus_M_contig911.20536.1|Name=mRNA_F-serratus_M_contig911.20536.1|organism=Fucus serratus male|type=mRNA|length=2783bp|location=Sequence derived from alignment at F-serratus_M_contig911:132307..135089- (Fucus serratus male)
GGTATATTTAACAGTCCGTGTGCGCACCCGTAGGACTTTGGTGTACGGCT
ACTCGTTGTCAGACCGCCAAGGTCGACATCATCACCCCATCTTGTTCAGC
GTGCCATCCAGCGGCGTACAGGTATTGCTGTTGAAAATAGTGCCCTCCTC
TCAGTCCGTACGCCCTTTTCTCGCTTTTTGTGTTGATCCTTCCTTGTTTC
GTGGTACCATCTGTGTGTATATGGTTGCTCTCCGCCCGGAACTGCAAGAA
GCAAGCTCTACAACCGCTTGTAGTCGAAGAAGGGAGCGCAGTATCTCCTA
TATATAGCCTACGAACAGCAGTACAAGTAAAGCAGACCACTCGATTTTGT
TTTAGCCGTACGCAGGAGGGTCCTTCTTTCGTAAAGAAGTCATGATCAGC
AGAAACTCAGAGAGAACCGCAGGTTGGACCAACCCCCTCTTCGAACCCCA
GAAAATCCTATTTCAATCAGACGGGCGACCACGTCGAAGAGACTCCCCGG
CCGTGGCTGCCACCGCTGCGTCGCCCTCTTCTCTTAGAAGTGTCAAAACC
GATAGCTATTCGTCTAGGGCAGCGCCGATATCAACCATCGTGTCCATGAT
GCCCGCTGCGGGCATGAGCTCCTCTGGCGACCACCATAATAAGCTCGATC
TCATAAACCCAGGACGATCAAGAGGCGACGCCGGTGGCAGCAGCGGATCA
AGTGTGGGGGTCAGCGGATCCCCCCTTACCACGTGGAAGCACTCGCCGGG
AAACCGGGGTGGAGTGCAAGCATCCGCAGCTGCGCCGGTGACAGTGATCG
GTGGCGAGACCGCATTCAACGAACGTTTCTCAAGTGCCTACAGCTCTTGT
CGTCATTACGTCGCAATCGGTGAAGATCGTGGGAGCTTCATGGACCCAGA
TCAGGGGCCCGTTGACCGCCTTATAGCACTCGTGTCGGAAGGCGTGTCCC
TGTCGAAGAGGGTCCTCGGTAATGAACGACAATCTGCGAGGCTCGGCGGC
CGGCTGTCGGCTCTGAAAACCCCCCTCTGGCAGCTGCAGGCGAGAGTCAA
GACACAGGCGGAACGACCCCCGGACTTCATCTACACCCTGAGCGAAGAGG
TGTCGAGTAGCGTGGACTTCATGCAGGAGCTAACGGATCCGGACTGGTGG
AATCAGATATGTCGCAAGGTGAGATGTCTAGTCGGCGGCCGGCTGTCGCG
GGTTAACTACTATACTGTGTAAACACACAGCTTTTGTGTGTATTCATAGG
AGAGCAAATTTGTGGCCCTCTTCCTTCCGCAAGTTGATTCAGACATTAAT
ATACTGAACTCGCTGTACACAGCCGGTATTTATTTTATCCTCGGTGAGAA
CTATCAAAACAAGTACCAGGTGACTACATACAGCACTCCTATACTTGTAC
AGCACAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTTTTTCCGGG
TTGGCAACCAATACGCTGAATGTGAGAAACAACATACCTGGTAGTACAAC
ACTCCTATATCCTACAACAGTAGTACGCTGCTTCATCTTTACTAATATAG
CCTAATACTGGTACTACTGACTGTACTATTATTGCATGTATTACTTTGTT
TTTTTTTAACAAACCGCAGCACGAACATTTCACATTTCGACAAACTCAGA
GCGCTGACGGATACGACCGGAACGTATCGCTTCCCAAGCAAGCATTCGTC
GACTCCCACTCCCGCCGACAGAATGGGCTTTACGAACTGCACTTTCTCTA
CAAGCTTTCGTCGACTCCCTCTCCCGACAGAATGAACTCTACGAACTGTA
TTTTGTTCTCTACTCTAGACCGTTACTACTTACTACTATACTGCAGCTGA
CGTTGCCGGTACTGTACTATTATGAGGTTGCGGATACGTTATCTCACAGA
ACAGTTTTTTTCGCAAGACTAGGAAAATTCAACCTTGTCTATATAGGCTA
CAACCTACCAAGTACCAGTACAGAGTTAAACCCGCTCTGCGCTCGGTTTC
CGTGCGTAGTTCATACTGGTACCAGGTACGTACGCTGTTCTGCACCGTAT
ATACAGTACTACTACTGTACCATGATTATTTCCACCTTTTACAAAAGATT
GCACTCGTAGGAGCGATGTCTACATGATCCAGTGCTACTTTGCCCCAACG
GTAATACTGCAATCTGGGAAAACGAAGCACATGACATAGCTGCCCGTGAT
GTATTTGAACACGTCCTGACCATGACCGTCTATAATAGTCTATTCTACGT
CCAGAAAGTTTACGTCAATTCAACTACGAACTACGAATATGCGACGACAG
CAAATCTACCAGTCTGCTTATTTTGAGGGCAAGGACCCGTTGTCCAGTTC
GGAGTGGTGCTGCCACGTGCTAACCTTAGTTTTGCGACGCTGTTCGACTG
TCCGCGTTCTGTTCCGTTCCGTTTTATGTCATCATGACTGATCAGCACGG
GGCATTCCGAGTGTCCGATCACATCCTACTCTGTATTGATCGATTGTCGC
CCAATACAACTCTTCTAGGAATAAAGCCTCACGGAGGCATTTCGCATGCT
CCGCTGACCTGCGTACCACAGCCACTGAGCTGCTGGCTTCTGTTTACACG
TTTTTTTGTGTTGTGAAATATATACCCGCTTTGCCGCAGGACGACGCGGC
TGTTTTCCGTGATCTGAACGAGCGTCTGACCGCTGCGGTCCGCGGCGACC
GTCAGTTCGAAGCCGCGCTCAACTTTCCTCGAGCAGCAGATGAGGATCGA
GCGGATCGGATCGTCGATTTTGAACACCTGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig911:132307..135089-

>mRNA_F-serratus_M_contig911.20536.1 ID=mRNA_F-serratus_M_contig911.20536.1|Name=mRNA_F-serratus_M_contig911.20536.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig911:132307..135089- (Fucus serratus male)
ATGGACCCAGATCAGGGGCCCGTTGACCGCCTTATAGCACTCGTGTCGGA
AGGCGTGTCCCTGTCGAAGAGGGTCCTCGGTAATGAACGACAATCTGCGA
GGCTCGGCGGCCGGCTGTCGGCTCTGAAAACCCCCCTCTGGCAGCTGCAG
GCGAGAGTCAAGACACAGGCGGAACGACCCCCGGACTTCATCTACACCCT
GAGCGAAGAGGTGTCGAGTAGCGTGGACTTCATGCAGGAGCTAACGGATC
CGGACTGGTGGAATCAGATATGTCGCAAGATGGACCCAGATCAGGGGCCC
GTTGACCGCCTTATAGCACTCGTGTCGGAAGGCGTGTCCCTGTCGAAGAG
GGTCCTCGGTAATGAACGACAATCTGCGAGGCTCGGCGGCCGGCTGTCGG
CTCTGAAAACCCCCCTCTGGCAGCTGCAGGCGAGAGTCAAGACACAGGCG
GAACGACCCCCGGACTTCATCTACACCCTGAGCGAAGAGGTGTCGAGTAG
CGTGGACTTCATGCAGGAGCTAACGGATCCGGACTGGTGGAATCAGATAT
GTCGCAAGGACGACGCGGCTGTTTTCCGTGATCTGAACGAGCGTCTGACC
GCTGCGGTCCGCGGCGACCGTCAGTTCGAAGCCGCGCTCAACTTTCCTCG
AGCAGCAGATGAGGATCGAGCGGATCGGATCGTCGATTTTGAACACCTGC
AGGACGACGCGGCTGTTTTCCGTGATCTGAACGAGCGTCTGACCGCTGCG
GTCCGCGGCGACCGTCAGTTCGAAGCCGCGCTCAACTTTCCTCGAGCAGC
AGATGAGGATCGAGCGGATCGGATCGTCGATTTTGAACACCTGCAG
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