mRNA_F-serratus_M_contig91.20523.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig91.20523.1 vs. uniprot
Match: D7FNN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN6_ECTSI) HSP 1 Score: 346 bits (888), Expect = 7.780e-113 Identity = 215/385 (55.84%), Postives = 267/385 (69.35%), Query Frame = 1
Query: 73 MRRCRSFVQVGQLRQ------PWLKRRTYTEYVPGPPSPSDLKAPLPEKFSIGKNNKLKAILFEYDLLAGSPSNRRPRTADVGGRATT-------AAAEPNTTSERKSAGAFQPISPSGENLVDEITGLLSMARSAAGLNDNNLQGMGRNLIADLKDKMGAS--GSSDKSHPKKATTPQPSRNAQSSDPADRYREKLRLRTGGLNSTASDASTT-SQPGGDGLLFAAKETLASSEGIS-KSAWMLRKGAGNLLLYLATRSVQLGLIASPRTSPWEFDSFVDQLRKQSVKVRVAISPEAVEAQGVEAGVAKALSELGV---HGVGSEVLVVGSSDPVLRAATAAKMFTARYHPPNTRREGVIQTFIVRDIDEVRNVVEQLNGISYR 1167
MRRCR ++G LR+ P RTY+EY P PSP+DLKAPLPEKFS+GKN KLKA+LF+YDLLAGS R+ TA A A P+T+ F P++PSGENLVDEITG+L R + LQ +GR LIADLKDKMGAS SS + P K Q R +Q SDP +Y EKLR +TG + +AS A+T SQPGGD LFAA+ ++S+E + SAWMLR+GAG+LL YLA RS++LG+IA P+TSP EF+SFV QLR+QS++V A+SPE +E GVEAGV +A ELG+ G++VL+VGSS+P+L AAT A MFTARY+PPN+RREGVIQTF+VRDIDEVR VVEQ+NG+SYR
Sbjct: 1 MRRCR---ELGHLRRWSSIVVPKSAGRTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPSXXXXXXXXPGAPASPSTS--------FDPLTPSGENLVDEITGVLGKGRG------DRLQELGRALIADLKDKMGASVTSSSAPTPPAKQQREQRPRVSQDSDPKAKYMEKLRKKTGAGSISASPAATAGSQPGGDADLFAARNLVSSTEAANLHSAWMLRQGAGDLLTYLAARSLRLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEGRRGGADVLLVGSSNPLLSAATEANMFTARYYPPNSRREGVIQTFVVRDIDEVRTVVEQVNGVSYR 368
BLAST of mRNA_F-serratus_M_contig91.20523.1 vs. uniprot
Match: A0A7S2L1U8_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L1U8_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 8.500e-18 Identity = 97/343 (28.28%), Postives = 160/343 (46.65%), Query Frame = 1
Query: 178 LKAPLPEKFSIGKNNKLKAILFEYDLLAGSPSNRRPRTADVGGRATTAAAEPNTTSERKSAGAFQP--ISPSGENLVDEITGLLSMARSAAGLNDNNLQGMGRNLIADLKDKMGA------SGSSDKSHPKKATTPQPSRNAQSSDPADRYREKLRLRTGGLNSTASDASTT--SQPGGDGLLFAAKETLASSEGISKSA--WMLRKGAGNLLLYLATRSVQLGLIASPRTSPWEFDSFVDQLRKQSVKVRVAISPEAVEAQGVEAGVAKALSELGVHGVGS-EVLVVGSSDPVLRAATAAKMFTARYHPPNTRREGVIQTFIVRDIDEVRNVVEQLNGISYR 1167
+KA + +GKNNK+++I ++DL+A + ++ + A P T+S SAG +S + +IT + M +S A L + L G+ +D + A SG+ + ++ +P + SD D+Y EK++ + G + D + S+ GD A+ T+A++E + KS W+ G GNLL YL RS+++ L+ P T + +D L +Q VR+ + E Q E + + LS+ +G+ LVV D L+AA MFT R N RR + V I EV+++V +NGIS+R
Sbjct: 25 IKADTNSRMDMGKNNKVRSIALDFDLIARNIAHDKKEDATA----------PPTSS---SAGGTMTGRLSQEASTVTRKITPDVGMVQSIANLLNVKLGSDGKKKDDFAEDDLSALESPSVSGTMHDARTSSRSSAKPVKFPPMSDVRDKYAEKIKQKLDGGSLAGVDRAKLEKSEKKGDAFHIQAR-TIAAAEPVMKSGSKWLANTGTGNLLAYLTNRSMRIALVPKPNTKDDDVGDDMDSLSRQLPNVRIHSMIKDGERQPDEI-LNEVLSK--ANGIPEISTLVVSDQDDYLKAARDMGMFTCRVQLKNVRRGSCTTDYTVSSIAEVQDIVNDINGISFR 350
BLAST of mRNA_F-serratus_M_contig91.20523.1 vs. uniprot
Match: A0A7S3V6T9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6T9_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 7.970e-11 Identity = 97/364 (26.65%), Postives = 160/364 (43.96%), Query Frame = 1
Query: 166 SPSDLKAPLPEKFSIGKNNKLKAILFEYDLLAGSPSNRRPRTADVG--------GRATTAAAEPNTTSERKSAGAFQPISPSGENLVDEITGLLSMARSAAGLNDNNLQGMGR----NLIADLKDK-----MGASGSSDKSH---PKKATTPQPSRNAQSSDPADRYREKLRLRT-GGLNST--ASDASTTSQPGGDGLLFAAKETLASSEGISK--SAWMLRKGAGNLLLYLATRSVQLGLIASPRTSPWEFDSF----VDQLRKQSVKVRVAISPEAVEAQGVEAGVAKALSELG--VHGVGSEVLVVGSSDPVLRAATAAKMFTARYHPPNTRREGVIQTFIVRDIDEVRNVVEQLNGISY 1164
S D KA K + GKNNK++AI ++DL+ S ++ + AT AAA+ NT +N++ ++ + + A L + NL G R N I D +D +G + + K P+ A+ + + ++ + D RY KLR R GGL+ A+ + GD A LA++ ++K S WM G+G LL +L RS+ + LI +P+ E +++L KQ ++ I E V++ + L+++ + LVV D LR+ MFT R N R + F V D+ +V++V+ +LNGIS+
Sbjct: 45 SAGDTKA---SKLNTGKNNKVRAIALDFDLITRSIDQKKMEDNEXXXXXXXXXXAMATGAAAKSNTK----------------KNVLGDVKPHVGAIENIANLLNVNLGGEKRRNTNNPINDSEDDDLSLLLGKTKNDTKKSNHAPEPASEREVNNDSPNIDIRTRYAAKLRDRVEGGLSGVELANSKREEALKQGDAEGHFAARKLAAANTVAKAGSKWMASTGSGTLLQFLDARSMIIALIPTPKILNAEEKGMNKKAMNELTKQLSNLKFDILSEGVDSGSDSDVGTRILTDVANEIEAGPKSTLVVSDKDEYLRSGRDLGMFTCRVRRKNQPRGNITTNFNVEDVTDVQDVINELNGISF 389
BLAST of mRNA_F-serratus_M_contig91.20523.1 vs. uniprot
Match: A0A7S1UI29_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI29_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 8.850e-8 Identity = 95/387 (24.55%), Postives = 145/387 (37.47%), Query Frame = 1
Query: 205 SIGKNNKLKAILFEYDLLAGSPSNRRPRTADVGGRATTAAAEPNTTSERKSAGAFQPISPSGE-NLVDEITGLLSMARSAAGLNDNNLQGMGRNLIADLKDKMGASGSSDKSHPKKATTPQPSRNAQSS-DPADRYREKLRLRTGGLNSTASDASTTSQPGGDGLLFAAKETLASSEGI-SKSAWMLRKGAGNLLLYLATRSVQLGLIASPRT----------------------------SPWEFD--------------------------------SFVDQLRKQSVKVRVAISPEAVEAQGVEAGVAKALSELGVHGVG---SEVLVVGSSDPVLRAATAAKMFTARYHPPNTRREGVIQTFIVRDIDEVRNVVEQLNGISYR 1167
++GKN KL+ +L + L GS DV A++ S K G + +P+ + V+E+ LL+ +R + + + LKD + +A P P + + D +Y +KLR + + A T +GL FA K + G + S W++ GAG L YL RS++LG++ R S +FD +FVD L R A + E + L E +H VG +E LVV +D +L+AA K T R PPNTRR V + + + ++R +VE NGISYR
Sbjct: 60 AVGKNLKLRGVLLQLGCLRGSKGESADALDDV------ASSGMGVESMSKKPGDKKLAAPAPDVQRVEEVQALLAKSRQRGDEEFVDAEDL-------LKDPSAPRPGDNAKAASQAQAPAPKVDVGTGIDVRSKYADKLRQKKVSMAGLAGMGDTGGGDA-EGLAFA-KTLVQKRTGFGTASTWIMAAGAGPALEYLQHRSMKLGIVVHSREQEGAEKMVDGIVSQAKLHGISFDGIAGLSMTDFDVDEEELVGEDDANDSQGVAESKPAGPPKDLWNTFVDGLTSMGSSPRRATPANGTDIDEYEVKRHRKLLETALHKVGLDRAEALVVSDNDNLLQAAKGLKCVTCRLCPPNTRRGRVNADLVAKSLKDLRGLVEDYNGISYR 431 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig91.20523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig91.20523.1 >prot_F-serratus_M_contig91.20523.1 ID=prot_F-serratus_M_contig91.20523.1|Name=mRNA_F-serratus_M_contig91.20523.1|organism=Fucus serratus male|type=polypeptide|length=366bp MRRCRSFVQVGQLRQPWLKRRTYTEYVPGPPSPSDLKAPLPEKFSIGKNNback to top mRNA from alignment at F-serratus_M_contig91:740984..744622- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig91.20523.1 ID=mRNA_F-serratus_M_contig91.20523.1|Name=mRNA_F-serratus_M_contig91.20523.1|organism=Fucus serratus male|type=mRNA|length=3639bp|location=Sequence derived from alignment at F-serratus_M_contig91:740984..744622- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig91:740984..744622- >mRNA_F-serratus_M_contig91.20523.1 ID=mRNA_F-serratus_M_contig91.20523.1|Name=mRNA_F-serratus_M_contig91.20523.1|organism=Fucus serratus male|type=CDS|length=2196bp|location=Sequence derived from alignment at F-serratus_M_contig91:740984..744622- (Fucus serratus male)back to top |