mRNA_F-serratus_M_contig906.20480.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig906.20480.1
Unique NamemRNA_F-serratus_M_contig906.20480.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig906.20480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig906contigF-serratus_M_contig906:61911..65497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size537
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig906.20480.1prot_F-serratus_M_contig906.20480.1Fucus serratus malepolypeptideF-serratus_M_contig906 61917..65374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932641.2804468-UTR-F-serratus_M_contig906:61910..619161622932641.2804468-UTR-F-serratus_M_contig906:61910..61916Fucus serratus maleUTRF-serratus_M_contig906 61911..61916 +
1690964399.9243689-UTR-F-serratus_M_contig906:61910..619161690964399.9243689-UTR-F-serratus_M_contig906:61910..61916Fucus serratus maleUTRF-serratus_M_contig906 61911..61916 +
1622932641.337861-UTR-F-serratus_M_contig906:65374..654971622932641.337861-UTR-F-serratus_M_contig906:65374..65497Fucus serratus maleUTRF-serratus_M_contig906 65375..65497 +
1690964399.972928-UTR-F-serratus_M_contig906:65374..654971690964399.972928-UTR-F-serratus_M_contig906:65374..65497Fucus serratus maleUTRF-serratus_M_contig906 65375..65497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932641.2931306-CDS-F-serratus_M_contig906:61916..619881622932641.2931306-CDS-F-serratus_M_contig906:61916..61988Fucus serratus maleCDSF-serratus_M_contig906 61917..61988 +
1690964399.9345949-CDS-F-serratus_M_contig906:61916..619881690964399.9345949-CDS-F-serratus_M_contig906:61916..61988Fucus serratus maleCDSF-serratus_M_contig906 61917..61988 +
1622932641.3077781-CDS-F-serratus_M_contig906:64534..646191622932641.3077781-CDS-F-serratus_M_contig906:64534..64619Fucus serratus maleCDSF-serratus_M_contig906 64535..64619 +
1690964399.9476283-CDS-F-serratus_M_contig906:64534..646191690964399.9476283-CDS-F-serratus_M_contig906:64534..64619Fucus serratus maleCDSF-serratus_M_contig906 64535..64619 +
1622932641.324747-CDS-F-serratus_M_contig906:65123..653741622932641.324747-CDS-F-serratus_M_contig906:65123..65374Fucus serratus maleCDSF-serratus_M_contig906 65124..65374 +
1690964399.9627168-CDS-F-serratus_M_contig906:65123..653741690964399.9627168-CDS-F-serratus_M_contig906:65123..65374Fucus serratus maleCDSF-serratus_M_contig906 65124..65374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig906.20480.1

>prot_F-serratus_M_contig906.20480.1 ID=prot_F-serratus_M_contig906.20480.1|Name=mRNA_F-serratus_M_contig906.20480.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MFQGPFYTRTNIFSNRQIAKYFEKLWWWWRSPFLRLLLRCPHQESLCLLF
RHCNPPQIEADCCSKLRGRSTKTPKGRAALKKNETQDLSEMSGRQTPSWP
YRLARWWVSSRPSRHETRCGVCGCKKLKMMLKGAA*
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mRNA from alignment at F-serratus_M_contig906:61911..65497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig906.20480.1 ID=mRNA_F-serratus_M_contig906.20480.1|Name=mRNA_F-serratus_M_contig906.20480.1|organism=Fucus serratus male|type=mRNA|length=3587bp|location=Sequence derived from alignment at F-serratus_M_contig906:61911..65497+ (Fucus serratus male)
GTTACAATGTTTCAAGGGCCGTTTTACACGAGGACAAATATTTTTTCAAA
CAGACAAATTGCAAAATATTTTGAAAAGGTAAGTCGGCGTTCCTCCAATT
ATTTCCTTCGCATTTGTCCGAGAATCGTTTGGAAAATTTCAAAATTTTGT
CCGGAATCTCTTCCAAACGGACAAATTTCCAAAGTACTCAACCATAGGGG
ATCTAGGTCCATGGCTGACCGTAGAAAGCGCCGCGCCCGTACTTGTTCGA
TGCCCCCCCAAGACGGAGGCATGAACGAGTACACGTTCGAGAAGCTAGCC
GTGTGTGTACTTTTTAACCCGAATCTTCTCGCTCTCTCCATGAACATACT
TGTAGTTTTGCTCTTGAGTGCTGCTCTACGTAGTGTCCTCGTGATCAACT
CTGCTTTACCAACTTACTATTGTTCATTGAACACAACTCAACTGCTGTAT
ATGTTAGTACGAACTTGTGTTTTTGTGTTTTTTTAACACAATTCAACTGC
TGTGTATCTTTCGCACAGAATGTACCGCATGAACGAGCTCACGTTCGAGA
AGCTAGCCGTGTGTGTGCCTTTTAATCCGAACCTTCCTGCTCTCTCCATG
TACATACTACTTGTAGTTTTGCTCGTGAGTGCTGCTTTACGTAGTGTCCT
CGTGATCAACTCTGCTTTACCAACTTACGATTGTTCATTGAACACAACTC
AACTGCTGTATATGTTACGTACGAACTTGTGTTTTTGTGTTTTTGAACAC
AATTCAACTGCTGTGTATCTTTCGCAGAATGTACCGCATGAACGAGCACA
CGTTCGAGAAGCTAGCCGAGTGTGTGCTTTTTAATCCGAACCTTCCCGCT
CTCTCCATGTACATACTTGTAGTTTTGCTCGCGAGTGCTGCTCTACGCAC
TGTTTAAAGAAAAACGTAGTCCTTGTGAACAACCCTCCTTTACCAACTTA
CAATCGTTCATCATTGAACACAACTCAACTGCTGTGTATATGTTACGTAC
GAACCTGTGTTTTTGAACACAATTGCAACTGCTGTACATCGTACGTACTT
ATATTTGTTTATTGTGTGTGTTGCTGTTTTGGTCTCGCGAGACGGGTTCA
TATCGCAAGGCAGTTCCAACACGAGTAGTCCTTCAAATACGCGGAGAGGC
TGCCGATGCTCTTGTCGGAGCAGCTGTGTGTCTCGGACCCAAGCATGCAA
CCTCCATTCGGGGCAGGTACCTATAGGCTTATCTGTGTTCTTGGAGGCCT
GATGACCATGCTTACTCAGGACAATTCGCATGAGCTCTGGCATACTTCAG
GTGCGACTGCCGTGAACTTGTGTCGCTGTGTAAAATGTGATCTCAATGCC
GTATTTCTCCGTTCTCGTCCATTCCCTGCTCCTTGTGTTGATTGATTAAT
TGATAGAATTCTCACATAAGCTGATGTCAAAAATCCAGCCCGTGGTCACA
AGGTAGAAAAACACCATTCGGAAGGAAAGAACGTACGACGCACTCTCTGT
AAAGCGGAAATGGTTCAAACAAATACTCGGAAAAAGCGGAAATGGTTCAA
ACAAATACTGTAAAGCGGAAATGGTTCAAACAAATACTCGGAAAAAGCGA
CATCTCCAAAACAAAACAAAAAAGAAGAAAAAAAATAAACGCGTGTGGCT
ATCGGGGCGCCCGCATATATATGGTCATCACATATAGCAGAGTATAGATC
AACCAGGTATGGTTGCCAATCCTGCTCGTGGCCAGCTGAAAAGGGAAAAT
GAATATTCCCCTGTCCCCGTGCGTGCCTGAGAATTTGGTCTCGCGAGACG
GGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCAATACTCAGGCT
GAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCATATATATCGAAG
AACGATTGAACGAAAGGCCGCGGCTTCAACGAAATCATAGAGACGAGAAC
GAAGCAAAACAAAGCATAGGCAACACCGGAGAAAAACGTCATGGCATCGG
CAAACAGAACGCCCGGAGGATACAAGTTCGCGCCACTTGTGGCTAGTCAA
CAAGGGCGAGCAAACCTCCACGCGGTGGACGTTCTCATTACAGAGTACCA
GGTACTTTATTTGGTATCAACCCTTCGCGCGATTGGAATGACTTGACTCC
AATCTTCAATTAACACGACCATCGAAACAGCTTCGTTCGCATCCTCTTAC
CAGTAAAATCGGTCGCCGAGGGCGCCGGACTTGGAAAAGCATAAAATAAA
GCATAAGAAGAGTAGTAGTAGATTACGTCAATCGAGGTGTTGTAATACGG
CATGTTTTTTCTGTGCGTAATTGGTAGCTCAGAGGTAACCTGCGTAACCT
TCTAACACGTTGACACGTCGGGACGTGAGTTCGATCCTGGCAAACGGGAT
TTTTCTCACCAAAAATCAATGCCGACTCTTATGGAAACGAAAAACTTAAA
CGAAAATAGCCCAAATCCGTTTTTTTATTCGGAACCAAAAATATGGTCAG
ATTCAATCTTTTGGCAACGGTTTTGTTTCGGTATCTCCTGCGTGAGCTCG
CCGTCTTCGTTGACGAGGCCACCCAAGTATCGGAGCTGGGCGGTCTGAGC
ATATATTTTTGCTTCGATGACCAGTTGTGGTGGTGGTGGCGATCTCCCTT
TCTTCGGCTTCTTCTGCGGTGCCCGCATCAAGAGAGTCTCTGCCTTCTTT
TCCGACACTGTGAGGCCAAAATGCACCTTATCTTTGCCGTCAAAACATGG
GCAGAGATTCAGCAGTGCCTGGATGCTGTTGGTATCAAACTCTGTTATGA
TGCAGGGCTTGTGACAAGTACCAGACGCGCACCGTTGAATTGCCGTCGTT
GTTGGAAATAACGTACGTACCCTACTCTCGTTCGGGCCGCAATACACTGC
GTGTAGTGCAAGACACGCACCGTTGCAATGCAGTCGTTCTTGAAAATTAC
GCACCCTACTATCATTTAGGCCTGTGCACTGTGTGTAGTGCAAAACGCGC
ACCTTTACAGTGCCGTCGTTGTCGAAAGTTACGCACCCTACTATCTTTCA
GGCCGCAATGCACTATATGTAGTGTAAGACGCACACCGTTACAGTGCCGT
CGTTGTGGAAAGTTACGCACCCTGCTATCGTTCAGGTCGCAATGCATTGT
ATGTAGTGCGAGATGTGCACCGTTGCAATGCCGTTGACTCAACTCACTTG
TGTGCCCAATCAGGCAATCCGCCACAGATAGAGGCTGACTGCTGCTCAAA
GCTCCGAGGACGCTCCACGAAGACTCCCAAGGGACGCGCCGCGCTGAAAA
AAAACGAGACTCAAGACCTATCAGAGATGTCCGGAAGACAAACTCCAAGT
TGGCCGTATAGGCTGGCGCGCTGGTGGGTGTCGAGCCGACCGAGCAGACA
CGAGACACGATGCGGTGTCTGCGGATGTAAAAAGCTGAAGATGATGTTGA
AAGGTGCCGCTTGAGGGCCAGACAAGCTTAGGAACAATGAGCTCTGAGAG
TTCAGGGTTGAGCGAAGAGTGGGAGAGGTGTACATAACCTTTGCTCATAT
AACACTAAAACTAATTGAACTACACACTCGTGAACCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig906:61911..65497+

>mRNA_F-serratus_M_contig906.20480.1 ID=mRNA_F-serratus_M_contig906.20480.1|Name=mRNA_F-serratus_M_contig906.20480.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig906:61911..65497+ (Fucus serratus male)
ATGTTTCAAGGGCCGTTTTACACGAGGACAAATATTTTTTCAAACAGACA
AATTGCAAAATATTTTGAAAAGATGTTTCAAGGGCCGTTTTACACGAGGA
CAAATATTTTTTCAAACAGACAAATTGCAAAATATTTTGAAAAGTTGTGG
TGGTGGTGGCGATCTCCCTTTCTTCGGCTTCTTCTGCGGTGCCCGCATCA
AGAGAGTCTCTGCCTTCTTTTCCGACACTTTGTGGTGGTGGTGGCGATCT
CCCTTTCTTCGGCTTCTTCTGCGGTGCCCGCATCAAGAGAGTCTCTGCCT
TCTTTTCCGACACTGCAATCCGCCACAGATAGAGGCTGACTGCTGCTCAA
AGCTCCGAGGACGCTCCACGAAGACTCCCAAGGGACGCGCCGCGCTGAAA
AAAAACGAGACTCAAGACCTATCAGAGATGTCCGGAAGACAAACTCCAAG
TTGGCCGTATAGGCTGGCGCGCTGGTGGGTGTCGAGCCGACCGAGCAGAC
ACGAGACACGATGCGGTGTCTGCGGATGTAAAAAGCTGAAGATGATGTTG
AAAGGTGCCGCTTGAGCAATCCGCCACAGATAGAGGCTGACTGCTGCTCA
AAGCTCCGAGGACGCTCCACGAAGACTCCCAAGGGACGCGCCGCGCTGAA
AAAAAACGAGACTCAAGACCTATCAGAGATGTCCGGAAGACAAACTCCAA
GTTGGCCGTATAGGCTGGCGCGCTGGTGGGTGTCGAGCCGACCGAGCAGA
CACGAGACACGATGCGGTGTCTGCGGATGTAAAAAGCTGAAGATGATGTT
GAAAGGTGCCGCTTGA
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