mRNA_F-serratus_M_contig906.20477.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig906.20477.1
Unique NamemRNA_F-serratus_M_contig906.20477.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: D7G659_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G659_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 6.200e-77
Identity = 114/167 (68.26%), Postives = 139/167 (83.23%), Query Frame = 2 
Query:   26 EEAGVRETDGMVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLREEGY 526
            +++ VR T+GMVLFWK P+CFVQWT C+F+++G +Y +AEQWMMASKA LF+DR AL++IM T DPR QKALGR VRGFD A W++ GYDVVV GN AKF QNP F   LL TGD+ILAEASPYD+EWGIGLHA+D +AL+Q RW G+NKLGEALM+VR++LR E Y
Sbjct:   49 DDSCVRTTEGMVLFWKEPACFVQWTPCSFELDGERYCNAEQWMMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAMWDKKGYDVVVRGNLAKFKQNPGFRDELLATGDRILAEASPYDSEWGIGLHANDADALIQARWPGRNKLGEALMDVRSQLRNEAY 215
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A6H5L2E7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E7_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 4.580e-76
Identity = 115/172 (66.86%), Postives = 141/172 (81.98%), Query Frame = 2 
Query:   11 GRGYPEEAGVRETDGMVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLREEGY 526
            G G+ ++  VR T+GMVLFWK P+CFVQWT C+F+++G +Y +AEQWMMASKA LF+DR AL++IM T DPR QKALGR VRGFD A W++ GYDVVV GN AKF QNP F   LL TGD+ILAEASPYD+EWGIGL A+D +AL+Q RW G+NKLGEALM+VR++LR+E Y
Sbjct:   44 GFGFDDDC-VRTTEGMVLFWKEPACFVQWTPCSFELDGERYCNAEQWMMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAVWDKTGYDVVVRGNLAKFRQNPGFRDELLATGDRILAEASPYDSEWGIGLKANDADALIQARWPGRNKLGEALMDVRSQLRDEAY 214
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A836CP42_9STRA (NADAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP42_9STRA)

HSP 1 Score: 186 bits (471), Expect = 9.320e-52
Identity = 87/154 (56.49%), Postives = 107/154 (69.48%), Query Frame = 2 
Query:   56 MVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLRE 517
            MVLFW+PP   VQWT   F+I GV YS AEQWMMA KA LF+ R  L +I+ T DP + K LGR V  F++  WERH   VV+ GNYAKF+QN    + L+DTG ++L EASP+D  WGIGL A+D  AL +RRW+G NKLG+ALM VR  + E
Sbjct:    1 MVLFWQPPGFLVQWTPSPFQIAGVAYSCAEQWMMACKARLFNARDVLAQILATADPEQHKRLGRAVPNFNSELWERHSLQVVIHGNYAKFTQNAALRRELVDTGSRLLVEASPHDRVWGIGLAANDPKALDERRWRGTNKLGQALMVVRQLIVE 154
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 5.290e-49
Identity = 87/164 (53.05%), Postives = 110/164 (67.07%), Query Frame = 2 
Query:   35 GVRE--TDGMVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLREE 520
            G RE  +  ++ FW+PPS F QWT   F ++ V+YS AEQ+MMA KA LF D ++ +KIM T  PRE K LGR V G+D   W++H   +V  GNYAKF+QN    QRLLDTG+K+LAEASPYD  WGIGL A +  A     W+G+N LG+ L EVRTR+  E
Sbjct:   51 GTREYVSPDLLFFWQPPSVFSQWTPSVFVVDNVQYSCAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQNVWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGLRADNPAARTPSSWRGQNLLGDILQEVRTRMIAE 214
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A6H5JIZ7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 6.260e-46
Identity = 85/175 (48.57%), Postives = 110/175 (62.86%), Query Frame = 2 
Query:   47 TDGMVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRW--QGKNKLGEALMEVRTRLREEGY*AYSLPDSVGAFP 565
            +D ++LFWKPPS   QWT   F + GV+YS  EQ+MM+ KA LF D  + +KIM   DP+  K LGR VR FD A+WER   ++V+ G+YAKF+QN D    LL+TG ++LAE+SP+D  WGIG+ A    A V  +W   GKN LG+ALMEVR  LR+        P S    P
Sbjct:   75 SDDVLLFWKPPSVSSQWTPSVFNVLGVRYSCGEQYMMSEKAKLFGDMTSYDKIMAAPDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAESSPFDRVWGIGMSACFPEASVSSKWAASGKNLLGKALMEVRRLLRDHSLSGEDFPASNSPTP 249
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A6H5L3B4_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B4_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.190e-45
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 2 
Query:   47 TDGMVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRW--QGKNKLGEALMEVRTRLRE 517
            +D ++LFWKPPS F QWT   F + GV+YS  EQ+MM+ KA LF D  + +KIM   DP+  K LGR VR FD A+WER   ++V+ G+YAKF+QN D    LL+TG ++LAEASP+D  WGIG+ A   +A V  +W   GKN LG+ALMEVR  LR+
Sbjct:   75 SDDVLLFWKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDLTSYDKIMAATDPKTHKFLGRNVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRFWGIGMSACFPDASVSSKWAASGKNLLGKALMEVRRLLRD 233
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: D7FMJ5_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ5_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.670e-45
Identity = 89/187 (47.59%), Postives = 111/187 (59.36%), Query Frame = 2 
Query:   38 VRETDGMVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLREEGY*AYSLPDSVGAFPVDAGAVAMETD 598
            +R TD MVLFW PP  F QW    F+++GVKY SAEQ+MMA KAN+F D     KIM T DP +QK LG+ V  +D   W       V+ GNY+KF+QNP    +LL TGDK+LAEAS +D  WGIG+ A D N      W+G+N LG+ LM VR ++R E       PD      V   A AME +
Sbjct:  130 LRVTDTMVLFWNPPCVFTQWEPALFEVDGVKYCSAEQYMMACKANVFGDTDIWNKIMSTSDPAQQKRLGKEVANYDHGIWNLCKVQFVLTGNYSKFTQNPGMCDQLLATGDKMLAEASQHDKVWGIGMDAFDPNVERHECWRGQNLLGKILMYVRNKIRWE------RPDLASRRQVQEAAAAMEAE 310
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A1R1ES34_9BACL (NADAR domain-containing protein n=13 Tax=Paenibacillus TaxID=44249 RepID=A0A1R1ES34_9BACL)

HSP 1 Score: 169 bits (428), Expect = 1.990e-45
Identity = 81/147 (55.10%), Postives = 99/147 (67.35%), Query Frame = 2 
Query:   80 SCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLREE 520
            SCF QW    F ++GV+Y+SAE +MMA KA LF D    E+I+    P++ K LGR VRGFD A W+R GY +VV GN AKFSQN D  Q LL TG ++L EASP D+ WG+GL A D+  L    W+GKN LG ALMEVR RL+ E
Sbjct:   36 SCFSQWWEAKFTVDGVEYASAEHYMMAEKARLFGDEEIREQILAARHPKQAKDLGRKVRGFDPAVWDREGYSIVVRGNEAKFSQNDDLKQFLLGTGQRVLVEASPVDSIWGVGLAADDEAVLNPLLWRGKNLLGFALMEVRDRLQAE 182
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A0S2G4Z8_9GAMM (NADAR domain-containing protein n=3 Tax=Lysobacter TaxID=68 RepID=A0A0S2G4Z8_9GAMM)

HSP 1 Score: 168 bits (425), Expect = 4.540e-45
Identity = 81/145 (55.86%), Postives = 100/145 (68.97%), Query Frame = 2 
Query:   80 SCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLR 514
            SCF QW    F+IEG++Y++AE WMMA KA LF D A   KI  + DP + KALGR + GFD A+W +H Y +VVAGN AKF+QNP   + LL TG+++L EASP D  WGIGL A D +A    RW+G N LG ALM+VR RLR
Sbjct:   32 SCFSQWYPAPFEIEGLRYTTAEHWMMAGKARLFGDEAMHAKIAASDDPAQVKALGRKIAGFDEARWVQHRYAIVVAGNQAKFAQNPALGEFLLATGEQVLVEASPVDPIWGIGLAADDPDATRPERWRGLNLLGFALMDVRDRLR 176
[Close]
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Match: A0A0N0ZUZ8_9FLAO (NADAR domain-containing protein n=1 Tax=Chryseobacterium indologenes TaxID=253 RepID=A0A0N0ZUZ8_9FLAO)

HSP 1 Score: 167 bits (423), Expect = 9.010e-45
Identity = 80/145 (55.17%), Postives = 98/145 (67.59%), Query Frame = 2 
Query:   80 SCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKIMETMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRLLDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRTRLR 514
            SCF QW   +FK EG++Y +AE +MMA KA LF+DR  LEKI+ + +P E K+LGR V+ FD   W+ + Y++V  GN+ KFSQNP     LL TGDKIL EASPYD  WGIG+  SD  AL    W G+N LG ALMEVR  LR
Sbjct:   35 SCFSQWFPASFKEEGIEYHTAEHYMMAGKARLFNDRKILEKILLSKNPNEVKSLGRKVKNFDPKLWDEYKYEIVKKGNFLKFSQNPKLKAFLLSTGDKILVEASPYDNIWGIGMLESDSRALDPSLWNGENLLGFALMEVRDELR 179
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig906.20477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G659_ECTSI6.200e-7768.26NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L2E7_9PHAE4.580e-7666.86NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CP42_9STRA9.320e-5256.49NADAR domain-containing protein n=1 Tax=Tribonema ... [more]
D7FYJ3_ECTSI5.290e-4953.05NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JIZ7_9PHAE6.260e-4648.57NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L3B4_9PHAE1.190e-4552.83NADAR domain-containing protein (Fragment) n=1 Tax... [more]
D7FMJ5_ECTSI1.670e-4547.59NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1R1ES34_9BACL1.990e-4555.10NADAR domain-containing protein n=13 Tax=Paenibaci... [more]
A0A0S2G4Z8_9GAMM4.540e-4555.86NADAR domain-containing protein n=3 Tax=Lysobacter... [more]
A0A0N0ZUZ8_9FLAO9.010e-4555.17NADAR domain-containing protein n=1 Tax=Chryseobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig906contigF-serratus_M_contig906:35677..40640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue1.2e-61
Seed eggNOG ortholog2880.D7G659
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons5
Model size1971
Cds size474
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932641.393821-UTR-F-serratus_M_contig906:35676..371181622932641.393821-UTR-F-serratus_M_contig906:35676..37118Fucus serratus maleUTRF-serratus_M_contig906 35677..37118 -
1690964399.9873416-UTR-F-serratus_M_contig906:35676..371181690964399.9873416-UTR-F-serratus_M_contig906:35676..37118Fucus serratus maleUTRF-serratus_M_contig906 35677..37118 -
1622932641.5266714-UTR-F-serratus_M_contig906:40585..406401622932641.5266714-UTR-F-serratus_M_contig906:40585..40640Fucus serratus maleUTRF-serratus_M_contig906 40586..40640 -
1690964400.0629082-UTR-F-serratus_M_contig906:40585..406401690964400.0629082-UTR-F-serratus_M_contig906:40585..40640Fucus serratus maleUTRF-serratus_M_contig906 40586..40640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932641.4282734-CDS-F-serratus_M_contig906:37118..371911622932641.4282734-CDS-F-serratus_M_contig906:37118..37191Fucus serratus maleCDSF-serratus_M_contig906 37119..37191 -
1690964400.0051756-CDS-F-serratus_M_contig906:37118..371911690964400.0051756-CDS-F-serratus_M_contig906:37118..37191Fucus serratus maleCDSF-serratus_M_contig906 37119..37191 -
1622932641.4470932-CDS-F-serratus_M_contig906:38365..384481622932641.4470932-CDS-F-serratus_M_contig906:38365..38448Fucus serratus maleCDSF-serratus_M_contig906 38366..38448 -
1690964400.015847-CDS-F-serratus_M_contig906:38365..384481690964400.015847-CDS-F-serratus_M_contig906:38365..38448Fucus serratus maleCDSF-serratus_M_contig906 38366..38448 -
1622932641.4653428-CDS-F-serratus_M_contig906:39072..392591622932641.4653428-CDS-F-serratus_M_contig906:39072..39259Fucus serratus maleCDSF-serratus_M_contig906 39073..39259 -
1690964400.0257154-CDS-F-serratus_M_contig906:39072..392591690964400.0257154-CDS-F-serratus_M_contig906:39072..39259Fucus serratus maleCDSF-serratus_M_contig906 39073..39259 -
1622932641.483688-CDS-F-serratus_M_contig906:39951..400131622932641.483688-CDS-F-serratus_M_contig906:39951..40013Fucus serratus maleCDSF-serratus_M_contig906 39952..40013 -
1690964400.0354097-CDS-F-serratus_M_contig906:39951..400131690964400.0354097-CDS-F-serratus_M_contig906:39951..40013Fucus serratus maleCDSF-serratus_M_contig906 39952..40013 -
1622932641.5072005-CDS-F-serratus_M_contig906:40516..405851622932641.5072005-CDS-F-serratus_M_contig906:40516..40585Fucus serratus maleCDSF-serratus_M_contig906 40517..40585 -
1690964400.045612-CDS-F-serratus_M_contig906:40516..405851690964400.045612-CDS-F-serratus_M_contig906:40516..40585Fucus serratus maleCDSF-serratus_M_contig906 40517..40585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig906.20477.1prot_F-serratus_M_contig906.20477.1Fucus serratus malepolypeptideF-serratus_M_contig906 37119..40585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig906.20477.1

>prot_F-serratus_M_contig906.20477.1 ID=prot_F-serratus_M_contig906.20477.1|Name=mRNA_F-serratus_M_contig906.20477.1|organism=Fucus serratus male|type=polypeptide|length=158bp
MVLFWKPPSCFVQWTLCNFKIEGVKYSSAEQWMMASKANLFDDRAALEKI
METMDPREQKALGRTVRGFDAAKWERHGYDVVVAGNYAKFSQNPDFLQRL
LDTGDKILAEASPYDTEWGIGLHASDDNALVQRRWQGKNKLGEALMEVRT
RLREEGY*
back to top

mRNA from alignment at F-serratus_M_contig906:35677..40640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig906.20477.1 ID=mRNA_F-serratus_M_contig906.20477.1|Name=mRNA_F-serratus_M_contig906.20477.1|organism=Fucus serratus male|type=mRNA|length=4964bp|location=Sequence derived from alignment at F-serratus_M_contig906:35677..40640- (Fucus serratus male)
GACGGATCGGGGCAGGGGCTATCCGGAGGAGGCAGGGGTGCGGGAGACCG
ACGGGATGGTGCTCTTCTGGAAGCCGCCTTCGTGCTTCGTGCAGTGGACA
CTATGCAATTTCAAAATCGAAGGGGTGCGGTGATAGTCTAATCCTTCTGC
TGTCCGTGTCAGGTTTATTTATTTAGCGAGCCGTTACCACGAGGATACGT
TTGATGACACTCCACGAAGAAGACAGGGGCTTGCCCATGCCCCCCTACCC
CGCACCCGGGCAATCATGCTTTCTCGAAACCCGTTAATCCTCTACCCGTG
TACAAACAGCATCGGCAGTGCAATAAACTAGACTACAGCAGCAGCTTTGT
GCTTCATGCGAAAACTTATGCCATTCGTTTTAGAAATGAAACGCGTGTCC
TTCTCTTTTGAAACTGACGGGCGCTATCTTGCCTCAAAAGACGCATCTTG
GTGCCCTTGTGTATGGTAGCTGGGTCGATGCAGCCGTTCGTGTGTAGTCA
AAGGGCGAATGTGGATCGAGGGGGACGGGTGTAGGCTGTCGCCGTCCTGC
TGCTGATCGCGCTTGTGTTCTCTTCTCCGCTTCCGCTTGCCCCCTGTGCT
TGTGGTTTTACCGATACCCCTCCGCAGGTCAAGTACTCCTCAGCCGAACA
GTGGATGATGGCGAGCAAGGCCAACCTTTTTGACGACCGGTGCGATGTTT
GGCACGAGGCAGCCTCCACATGATGTTTTCGTGGGCGTTTCTCTCTGCTT
GCCCTAGTCCAGAGAGGATATATCGCGGTTCCGGCAAATAAGGCCGCACG
AATCGGTTTTGCGTTGATAGTGGTCGGCCTGCCTCATGCCCAAGAAGGCG
AAAAATAGTATCACGACGTCGGTGGCAGCCTAAGTCGAGGTATAAACTCG
ATCTCCGGCGAGCGGAGGAGTAAAATATCAGGTCTGACCTCTCTATAAGC
CGCGGGGTTTCTCTGAACCACGCGGGGGAAAATAGCACGAAGCAAATCGT
GTTTCGAATCAGGCGATTCTCTCGCAGACTGCCCAACCGAGAAATATGCC
GTCTCGCTACCCCATTTTTTGTTCCCCTTGAATCGCGGTTACAATTCTGA
CAACACTTGCGATTGGACACCAAACTCAACTATTAATTAACACAAGCGGT
CTTTGTTTGTGAAGCGCCAAATGTAGTACTGGTGGTGGTAATAATAACAC
GTTTGTTCCACTCTCTGTACGTGCCAAGACCTTATTGCGTGCTTGCTTGT
GTTTGTGTGAGCGACAGCGTGAAAAAAATACGAAACTTATTTTCGTACCG
CACCTTTGAAACTGCACATCTACGTTGCGTGGTGACTTGAACGACGTACA
ACCCCACCCCCCCCCCTCCACAAACGACAAGCGCGGCGCTGGAGAAGATC
ATGGAGACGATGGATCCCCGCGAGCAGAAGGCGCTGGGTCGGACGGTAAG
GGGCTTTGACGCGGCCAAGTGGGAGCGGCACGGGTACGACGTGGTGGTCG
CGGGAAATTACGCGAAGTTCAGCCAGAACCCGGACTTCCTGCAGCGGCTC
CTCGACACGGGGGACAAGGTGCGGAGCGCGCGGGTGTCGTGTTCGTGCAT
AGCGTTAGCGCTGGTACCTAGGAAGGAAAGGGGTTGAAAGAGACGCCAAT
CGAGTAGGGGCGCTCTACCAATAATAAAGGCATAACGCACACACGTGCGG
CGGCGACAGTCGCCGTAGTCCCAAGTACCCGCCCACAGAGTTTCGAGTGC
GCCGCGGCCGCCGTTCGTCGATGACGAATGAATGGTACGTGTTCCATACC
CACCCAACATCCCAAGATGCTCCCCCGACCACAGAATAGCCACATAATGA
ATAGGGGGTTGAAAACTGGGGGATATTTTACCGATCGATGCTCATGTGGC
GCGAAAAGAGGTCGGTCGTTGCGACAGCGGTGTGCGTTCCCCGGTCCCGG
AACGGTCTCCAAAGTCGTCGTCGATCGGAGCATAGCAGAGCGTGCGATTC
CCGTCGGAGGAGACGCAGCGTAAAATCGCGCACCGGATTATCTTCCACGC
GGATAAAACGAGCCAGAAGTGGAAACTTCGAGAATGTCAAGTGATATTTT
CAAGACTCGGCTATCTCATCAGGGTTACCGTTTTTTACCAATCCGTTACT
GTCAACGGAACGATACTTTTGGGGGGTGTGTCGACGCGACAGATCCTGGC
GGAGGCAAGCCCGTACGACACCGAATGGGGCATCGGTCTTCACGCCAGCG
ACGACAACGCTCTCGTGCAGAGAAGGTGCGCAACGATGACTAAGAACCCC
CTCCCCCCTTCAAGAAAAATGCATTTCATATCGGTTTTTGGAGTCTTATT
TTGTTTTGTTTTTCATATGTTATATATCTCCCTTGTGGGAGTGGACGAAG
AAGTCGCGAGGGACTACGAGCTGCGTCAAGTGTGTACCCGCTGCTGCAAA
GGTCTAGATGCGTTCAGATTTTTCTTCAGTTTCATCGAGATACCACACAC
TATAAAATAATTATCCATCGTAGATTTCTGTTTTCCTGCGAAATCGTACG
GTCCGGTGCAAGAAAGCCTGAGCGCTAACAGTAATCCGGCCAGCCTTTAT
TAGAGCTACCTGGTAGACTTCAAAACTTGAGCAGGGCCAAACGGCAAAAG
ACGTGAACCACCACCCACGGGTCGTTGTACGACGGTATTAGATATTATAG
TATGCGTACAGTACTCAAGTGTATTGCCATATAGGCACTGAATAACGTAC
ACTGTACTGTAATACGAAGTACACATGACATTATCTCATCTACACCTGGA
GAAAGATAAACTAAAAGTAGTACAGTGTTTGAAAGGCTGAAGTGTTCGCG
CGAGGGCTAACGTCGTCGAACAGCGCTCCCTTGTAGAGTTACTTACTTTT
AATACTGTATTAATAATGTTGTACGATTACTATTAACACTCGTAACGCGG
TTTCAGTGAGGACCGCACGACCAGCGACCCGCGCAGTCCTCCCGTTCCTA
ACCTCACGCTCTATCCCGATTTCTCACATCTCCAAAAGACTCAAAAATAT
GACGCGCGGTGTAATCCGCATCGTATACAGTAACGCCTGGTTGGCTTGTG
GAACGTAAGCCTCTCTACCCAGAAAATGATCTGAAGCCCCCCTCGCCCCT
CATGCCTCCCATCAAATACTCCGTATAGTATACACCATATAATACACAAA
CTCGACTCTAATTATTTACCTGCCAGCGTGTGCTTCATATCATGCAGCGT
ACATCGTGTGGGGCGATGCTGTCATCACAAGCTCTCCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCGGT
ATTACCAGGTACCGGTATAACACAGCGCTCTATTGTTTTACTCTTGTTTT
GGGTGACGCAGCCCTCGTCATTTCTTGTCTCTTTTTTTTTTTTACGCAGG
TGGCAAGGAAAGAACAAGCTCGGAGAGGCGCTGATGGAGGTGCGCACCCG
ACTCAGGGAAGAGGGTTACTAGGCCTACAGTCTGCCAGACTCCGTGGGGG
CTTTTCCCGTGGATGCTGGCGCGGTCGCCATGGAGACCGACGACGGGAAC
GAGGAAGAGTCGAACGAGGACGATACAAGCGGCGAACACCGTCCGCGCAG
GTGAAAAAGACTCGACCTTCTCGGAAGAAAACAACAAGACAAAGATACGT
GGTTGTGGGAGCTCTGAGGCAGCCGTACGTAGTGTACTGTACATAACTTG
TGCGCTGTGTGCTTTTAAAAGGTTGTGCGGGCAGCTGCTCTCTCCCTCTT
TATCGAGCTCACAAAGATACGCTAGCAGCCTTTAAATAGATGTATAGATA
TTGTACCCCGAAGCCCTCTGAGAAATACCCTCGAGGGGGAAAACGATCTG
TCTCGTACCAGAGAGTGCTGCGAACAAGTATACCGAGATTTGTTTAGGGT
GAGAAATGAGTTGGGGGGGTGGGGTACTATCCATGCTGACGGAGCGTGTC
TCATGGGGGGTTTCTTGGATTTTTGATGTCAGGATAAAAGATGTAAGAGT
CGCGACGGTGTGTGATTTCTTGAAAAAGTATCAAGCATTTTTTATTGCCG
CGCTTTCGGCTGAAATATATTGTTGTGCGACAGAGTCAAAGAAAAAGGAG
CCATACGCTTTTATCAGACCCTTCTTTGTACAAACTAGCGTTAGTTCTAA
GTACATTGAAGGAGCATAACCGTCAAGTTTCATTACGTACTCTTGGAGAA
AATTTGGTTTTACGCGTAGTGTTTATGTAAGTGGAGGAGCAAAGAAATTA
TATGCATATATTGTGAAAAGTCAGGTGGATACGACATTCGTTGTTGTTGT
TTTTTGTGTGCGGGCGCCGCATAATTCAGCTTATGGCTAAAAATAATACG
TACGTGCCAGAAGGGATAAGCGTCTGAACGCGATCCGTTTGTCAAATCCA
ACTCAAATAAAAATACGCACATGCCAGCAATTGATTTATCAGAGAGGCGT
ACATGATGTGCTCCATGAGGTTAACTGAACAAGGAGCATGAGTTGTTCTA
CCTACCATATAGACTGCTGGTATATGTACCGGTGGGTTCTTGGAAGAGAA
GTGAACGCCACCGGTACGCAACTGAGTGGTTGGTAAACTCGGGAGGACTG
GCCCGATAGCGGTTGATGGTGTCGCTGTTAGATGACACCATCGCTATTTG
CTGACACCGCCGCGTGTAGCGGGAGGAAGAAAAAAAAAGACCCTTCTGAG
TCAGCACCAGATGCAGACTGGGTGTGGAGAATGAGCGGGCTAGCGCCGGA
AGGGATAGCCGAATCCGTTTCCGATGACACCATATTCTCAAGCGGGAACG
GGGACGGAAAACTGTTTTCGCTGTTCGCCTGGTATATGAGCCATCGACTT
CTTCAGGACTTACAAAAAAATAATCGACATAAAGCTGTGAAAGCGTTCAC
TGCGCACGTTCTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig906:35677..40640-

>mRNA_F-serratus_M_contig906.20477.1 ID=mRNA_F-serratus_M_contig906.20477.1|Name=mRNA_F-serratus_M_contig906.20477.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig906:35677..40640- (Fucus serratus male)
ATGGTGCTCTTCTGGAAGCCGCCTTCGTGCTTCGTGCAGTGGACACTATG
CAATTTCAAAATCGAAGGGATGGTGCTCTTCTGGAAGCCGCCTTCGTGCT
TCGTGCAGTGGACACTATGCAATTTCAAAATCGAAGGGGTCAAGTACTCC
TCAGCCGAACAGTGGATGATGGCGAGCAAGGCCAACCTTTTTGACGACCG
GTCAAGTACTCCTCAGCCGAACAGTGGATGATGGCGAGCAAGGCCAACCT
TTTTGACGACCGCGCGGCGCTGGAGAAGATCATGGAGACGATGGATCCCC
GCGAGCAGAAGGCGCTGGGTCGGACGGTAAGGGGCTTTGACGCGGCCAAG
TGGGAGCGGCACGGGTACGACGTGGTGGTCGCGGGAAATTACGCGAAGTT
CAGCCAGAACCCGGACTTCCTGCAGCGGCTCCTCGACACGGGGGACAAGC
GCGGCGCTGGAGAAGATCATGGAGACGATGGATCCCCGCGAGCAGAAGGC
GCTGGGTCGGACGGTAAGGGGCTTTGACGCGGCCAAGTGGGAGCGGCACG
GGTACGACGTGGTGGTCGCGGGAAATTACGCGAAGTTCAGCCAGAACCCG
GACTTCCTGCAGCGGCTCCTCGACACGGGGGACAAGATCCTGGCGGAGGC
AAGCCCGTACGACACCGAATGGGGCATCGGTCTTCACGCCAGCGACGACA
ACGCTCTCGTGCAGAGAAGATCCTGGCGGAGGCAAGCCCGTACGACACCG
AATGGGGCATCGGTCTTCACGCCAGCGACGACAACGCTCTCGTGCAGAGA
AGGTGGCAAGGAAAGAACAAGCTCGGAGAGGCGCTGATGGAGGTGCGCAC
CCGACTCAGGGAAGAGGGTTACTAGGTGGCAAGGAAAGAACAAGCTCGGA
GAGGCGCTGATGGAGGTGCGCACCCGACTCAGGGAAGAGGGTTACTAG
back to top