mRNA_F-serratus_M_contig905.20474.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig905.20474.1
Unique NamemRNA_F-serratus_M_contig905.20474.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig905.20474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig905contigF-serratus_M_contig905:195442..196233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size792
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig905.20474.1prot_F-serratus_M_contig905.20474.1Fucus serratus malepolypeptideF-serratus_M_contig905 195449..195889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932640.663073-UTR-F-serratus_M_contig905:195441..1954481622932640.663073-UTR-F-serratus_M_contig905:195441..195448Fucus serratus maleUTRF-serratus_M_contig905 195442..195448 +
1690964399.6751125-UTR-F-serratus_M_contig905:195441..1954481690964399.6751125-UTR-F-serratus_M_contig905:195441..195448Fucus serratus maleUTRF-serratus_M_contig905 195442..195448 +
1622932640.6949334-UTR-F-serratus_M_contig905:195889..1962331622932640.6949334-UTR-F-serratus_M_contig905:195889..196233Fucus serratus maleUTRF-serratus_M_contig905 195890..196233 +
1690964399.7098749-UTR-F-serratus_M_contig905:195889..1962331690964399.7098749-UTR-F-serratus_M_contig905:195889..196233Fucus serratus maleUTRF-serratus_M_contig905 195890..196233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932640.681018-CDS-F-serratus_M_contig905:195448..1958891622932640.681018-CDS-F-serratus_M_contig905:195448..195889Fucus serratus maleCDSF-serratus_M_contig905 195449..195889 +
1690964399.6980934-CDS-F-serratus_M_contig905:195448..1958891690964399.6980934-CDS-F-serratus_M_contig905:195448..195889Fucus serratus maleCDSF-serratus_M_contig905 195449..195889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig905.20474.1

>prot_F-serratus_M_contig905.20474.1 ID=prot_F-serratus_M_contig905.20474.1|Name=mRNA_F-serratus_M_contig905.20474.1|organism=Fucus serratus male|type=polypeptide|length=147bp
MLLIHVHIQRIVLASKETTVTQQVSHRSIKYQSRLRSQKKVPRSTGLHHD
DNPLLRPTGIQTATKNDPTLQVMAPTNVKTVHRTSLLNIDREQPRSTRIV
VAYPRPAFSATKRTEYAPTSFDQQVQVSQGHTLYKISKIEIPRSID*
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mRNA from alignment at F-serratus_M_contig905:195442..196233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig905.20474.1 ID=mRNA_F-serratus_M_contig905.20474.1|Name=mRNA_F-serratus_M_contig905.20474.1|organism=Fucus serratus male|type=mRNA|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig905:195442..196233+ (Fucus serratus male)
TGTCAAAATGTTGTTGATTCATGTACACATTCAGCGTATTGTTCTTGCAA
GTAAAGAAACAACGGTGACACAACAAGTCAGCCATAGATCTATCAAATAC
CAATCCCGCTTGCGGTCACAAAAAAAGGTACCAAGGTCAACGGGTTTACA
TCATGATGACAACCCGCTGCTCAGACCAACAGGGATACAAACTGCGACAA
AAAATGATCCGACTCTACAAGTAATGGCACCGACCAATGTCAAAACGGTT
CATCGAACCTCCTTACTCAATATAGATAGAGAGCAACCTCGATCGACTCG
GATTGTTGTCGCCTACCCACGACCAGCGTTCTCAGCAACAAAGCGGACAG
AATACGCTCCAACCAGTTTCGATCAACAAGTCCAAGTTTCTCAAGGCCAC
ACATTGTACAAAATAAGTAAAATTGAAATACCGAGGTCCATAGACTAGTG
GTGGAGGCCTTGAGCTAGGAAGCCGGTGCGCGAGCCAGCATCCAGTCGTC
CAAAGCCCTGTACATATGTCCTTGAAGCCCCACGAATCTTGCCCGTTCGC
CGCTCCTTGTGGTGCCCGACTACGGGCTGGGGGAGTGAAAGGAACAAAAA
AAATACAAAAACGACACGGAGGTCCGCGGAATACTAGACATAAGTCTTTA
GCCCCCTATTTTGAAATTTGAAAATGAGGCCCACCTTGGGCACATCTCGT
CCTCAGAGTTGCTGCTATTTGCCCCACCTTGGGGCATACCTCGTCCCAAG
AGGCAGGTTTTGTACAGTCCTTCGAAAGGCGTGGACAGTTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig905:195442..196233+

>mRNA_F-serratus_M_contig905.20474.1 ID=mRNA_F-serratus_M_contig905.20474.1|Name=mRNA_F-serratus_M_contig905.20474.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig905:195442..196233+ (Fucus serratus male)
ATGTTGTTGATTCATGTACACATTCAGCGTATTGTTCTTGCAAGTAAAGA
AACAACGGTGACACAACAAGTCAGCCATAGATCTATCAAATACCAATCCC
GCTTGCGGTCACAAAAAAAGGTACCAAGGTCAACGGGTTTACATCATGAT
GACAACCCGCTGCTCAGACCAACAGGGATACAAACTGCGACAAAAAATGA
TCCGACTCTACAAGTAATGGCACCGACCAATGTCAAAACGGTTCATCGAA
CCTCCTTACTCAATATAGATAGAGAGCAACCTCGATCGACTCGGATTGTT
GTCGCCTACCCACGACCAGCGTTCTCAGCAACAAAGCGGACAGAATACGC
TCCAACCAGTTTCGATCAACAAGTCCAAGTTTCTCAAGGCCACACATTGT
ACAAAATAAGTAAAATTGAAATACCGAGGTCCATAGACTAGATGTTGTTG
ATTCATGTACACATTCAGCGTATTGTTCTTGCAAGTAAAGAAACAACGGT
GACACAACAAGTCAGCCATAGATCTATCAAATACCAATCCCGCTTGCGGT
CACAAAAAAAGGTACCAAGGTCAACGGGTTTACATCATGATGACAACCCG
CTGCTCAGACCAACAGGGATACAAACTGCGACAAAAAATGATCCGACTCT
ACAAGTAATGGCACCGACCAATGTCAAAACGGTTCATCGAACCTCCTTAC
TCAATATAGATAGAGAGCAACCTCGATCGACTCGGATTGTTGTCGCCTAC
CCACGACCAGCGTTCTCAGCAACAAAGCGGACAGAATACGCTCCAACCAG
TTTCGATCAACAAGTCCAAGTTTCTCAAGGCCACACATTGTACAAAATAA
GTAAAATTGAAATACCGAGGTCCATAGACTAG
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