mRNA_F-serratus_M_contig903.20459.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig903.20459.1
Unique NamemRNA_F-serratus_M_contig903.20459.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig903.20459.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.160e-53
Identity = 121/242 (50.00%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 GRGGRYASWDALVKPFKQQWDHIEPPLEEPAVEALRGADVDIVEGP---------------------------CSRFSARPQPDDAAAFSVDQCSARAHPTAVASYVLRVRCGHGAHVVRRTWDDLVTLCTMLGATSPAPPRSEATPRGVVGIAEGIRGGSRPAATTVACAEGLGLEFAPPDVLGREAASSFLRDLLERPSMVWAIPARRFLELEYLDGTLKGGPIDDQGGYMARQVVSAAA 763
            G GG YASWD LVKP KQQWDHIE P  E       GA      GP                           CS FSA+P P+  AAFSV+QCSA+AHP AVASYVLRVRC  GAH+VRRTWDD+V LCTML     A                  R   + AA          +EF P DVL  +AAS FL+DLL RP M WA PARRFLELEYLDGTL+GG  DD     ARQV S AA
Sbjct:  326 GLGGGYASWDVLVKPLKQQWDHIEGPSAEARGGRRGGA------GPKPSAYSAXXXXXXXXXXXXXXXXXXXVCSVFSAQPCPNSTAAFSVEQCSAQAHPAAVASYVLRVRCAGGAHIVRRTWDDIVNLCTMLDRDVLA------------------RSAKKEAA----------IEFTPADVLAPDAASGFLKDLLVRPGMAWATPARRFLELEYLDGTLRGGVADDSRATAARQVASLAA 533
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig903.20459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE1.160e-5350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig903contigF-serratus_M_contig903:303734..304613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size880
Cds size879
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932637.0253885-CDS-F-serratus_M_contig903:303733..3046121622932637.0253885-CDS-F-serratus_M_contig903:303733..304612Fucus serratus maleCDSF-serratus_M_contig903 303734..304612 +
1690964397.9111938-CDS-F-serratus_M_contig903:303733..3046121690964397.9111938-CDS-F-serratus_M_contig903:303733..304612Fucus serratus maleCDSF-serratus_M_contig903 303734..304612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig903.20459.1prot_F-serratus_M_contig903.20459.1Fucus serratus malepolypeptideF-serratus_M_contig903 303734..304612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig903.20459.1

>prot_F-serratus_M_contig903.20459.1 ID=prot_F-serratus_M_contig903.20459.1|Name=mRNA_F-serratus_M_contig903.20459.1|organism=Fucus serratus male|type=polypeptide|length=293bp
EAEEQWLAFEGSAAEIRDKRTAGVKQSRRRRGAKCKRCHRPWRKVRFVGR
AGEAVQAAVGPHRATLGRTGGRGSTGSRRRHRRRPVLALLCPTATRRRRG
VQRGSVLRPGPSHGSCLLRSPRAMRPRGTRRAPHMGRPRHLVHHAWGYLP
CPPEKRSHTARSRWYRRGHTWRLQTSCYYGGMRRGVGARVRTSGRLGARS
GIEFPTGSAGATKHGLGDPCKALSRARVPRWNAEGRSDRRPGWIHGSAGG
FGSSGSVRYIGGEQDFIYATTKLVGRDAAAPATARSGLSRRLK
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mRNA from alignment at F-serratus_M_contig903:303734..304613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig903.20459.1 ID=mRNA_F-serratus_M_contig903.20459.1|Name=mRNA_F-serratus_M_contig903.20459.1|organism=Fucus serratus male|type=mRNA|length=880bp|location=Sequence derived from alignment at F-serratus_M_contig903:303734..304613+ (Fucus serratus male)
GAAGCGGAAGAGCAGTGGCTTGCCTTCGAAGGGTCGGCGGCGGAGATCCG
CGACAAGCGGACCGCGGGGGTCAAGCAAAGTCGGCGGCGGAGGGGGGCGA
AATGTAAGCGGTGTCACCGGCCGTGGAGGAAGGTACGCTTCGTGGGACGC
GCTGGTGAAGCCGTTCAAGCAGCAGTGGGACCACATCGAGCCACCCTTGG
AAGAACCGGCGGTCGAGGCTCTACGGGGAGCCGACGTCGACATCGTCGAA
GGCCCGTGCTCGCGCTTCTCTGCCCGACCGCAACCCGACGACGCCGCGGC
GTTCAGCGTGGATCAGTGCTCCGCCCGGGCCCATCCCACGGCAGTTGCCT
CCTACGTTCTCCGCGTGCGATGCGGCCACGGGGCACACGTCGTGCGCCGC
ACATGGGACGACCTCGTCACCTTGTGCACCATGCTTGGGGCTACCTCCCC
TGCCCCCCCGAGAAGCGAAGCCACACCGCGCGGAGTCGTTGGTATCGCCG
AGGGCATACGTGGCGGCTCCAGACCAGCTGCTACTACGGTGGCATGCGCA
GAGGGGTTGGGGCTCGAGTTCGCACCTCCGGACGTCTTGGGGCGCGAAGC
GGCATCGAGTTTCCTACGGGATCTGCTGGAGCGACCAAGCATGGTCTGGG
CGATCCCTGCAAGGCGCTTTCTCGAGCTAGAGTACCTCGATGGAACGCTG
AAGGGCGGTCCGATCGACGACCAGGGTGGATACATGGCTCGGCAGGTGGT
TTCGGCAGCAGCGGTAGCGTCCGTTACATCGGTGGAGAACAAGATTTCAT
CTACGCTACAACAAAGCTCGTCGGTCGAGACGCCGCAGCACCAGCAACCG
CGCGAAGCGGCCTCAGTAGGAGGCTTAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig903:303734..304613+

>mRNA_F-serratus_M_contig903.20459.1 ID=mRNA_F-serratus_M_contig903.20459.1|Name=mRNA_F-serratus_M_contig903.20459.1|organism=Fucus serratus male|type=CDS|length=1758bp|location=Sequence derived from alignment at F-serratus_M_contig903:303734..304613+ (Fucus serratus male)
GAAGCGGAAGAGCAGTGGCTTGCCTTCGAAGGGTCGGCGGCGGAGATCCG
CGACAAGCGGACCGCGGGGGTCAAGCAAAGTCGGCGGCGGAGGGGGGCGA
AATGTAAGCGGTGTCACCGGCCGTGGAGGAAGGTACGCTTCGTGGGACGC
GCTGGTGAAGCCGTTCAAGCAGCAGTGGGACCACATCGAGCCACCCTTGG
AAGAACCGGCGGTCGAGGCTCTACGGGGAGCCGACGTCGACATCGTCGAA
GGCCCGTGCTCGCGCTTCTCTGCCCGACCGCAACCCGACGACGCCGCGGC
GTTCAGCGTGGATCAGTGCTCCGCCCGGGCCCATCCCACGGCAGTTGCCT
CCTACGTTCTCCGCGTGCGATGCGGCCACGGGGCACACGTCGTGCGCCGC
ACATGGGACGACCTCGTCACCTTGTGCACCATGCTTGGGGCTACCTCCCC
TGCCCCCCCGAGAAGCGAAGCCACACCGCGCGGAGTCGTTGGTATCGCCG
AGGGCATACGTGGCGGCTCCAGACCAGCTGCTACTACGGTGGCATGCGCA
GAGGGGTTGGGGCTCGAGTTCGCACCTCCGGACGTCTTGGGGCGCGAAGC
GGCATCGAGTTTCCTACGGGATCTGCTGGAGCGACCAAGCATGGTCTGGG
CGATCCCTGCAAGGCGCTTTCTCGAGCTAGAGTACCTCGATGGAACGCTG
AAGGGCGGTCCGATCGACGACCAGGGTGGATACATGGCTCGGCAGGTGGT
TTCGGCAGCAGCGGTAGCGTCCGTTACATCGGTGGAGAACAAGATTTCAT
CTACGCTACAACAAAGCTCGTCGGTCGAGACGCCGCAGCACCAGCAACCG
CGCGAAGCGGCCTCAGTAGGAGGCTTAAAGAAGCGGAAGAGCAGTGGCTT
GCCTTCGAAGGGTCGGCGGCGGAGATCCGCGACAAGCGGACCGCGGGGGT
CAAGCAAAGTCGGCGGCGGAGGGGGGCGAAATGTAAGCGGTGTCACCGGC
CGTGGAGGAAGGTACGCTTCGTGGGACGCGCTGGTGAAGCCGTTCAAGCA
GCAGTGGGACCACATCGAGCCACCCTTGGAAGAACCGGCGGTCGAGGCTC
TACGGGGAGCCGACGTCGACATCGTCGAAGGCCCGTGCTCGCGCTTCTCT
GCCCGACCGCAACCCGACGACGCCGCGGCGTTCAGCGTGGATCAGTGCTC
CGCCCGGGCCCATCCCACGGCAGTTGCCTCCTACGTTCTCCGCGTGCGAT
GCGGCCACGGGGCACACGTCGTGCGCCGCACATGGGACGACCTCGTCACC
TTGTGCACCATGCTTGGGGCTACCTCCCCTGCCCCCCCGAGAAGCGAAGC
CACACCGCGCGGAGTCGTTGGTATCGCCGAGGGCATACGTGGCGGCTCCA
GACCAGCTGCTACTACGGTGGCATGCGCAGAGGGGTTGGGGCTCGAGTTC
GCACCTCCGGACGTCTTGGGGCGCGAAGCGGCATCGAGTTTCCTACGGGA
TCTGCTGGAGCGACCAAGCATGGTCTGGGCGATCCCTGCAAGGCGCTTTC
TCGAGCTAGAGTACCTCGATGGAACGCTGAAGGGCGGTCCGATCGACGAC
CAGGGTGGATACATGGCTCGGCAGGTGGTTTCGGCAGCAGCGGTAGCGTC
CGTTACATCGGTGGAGAACAAGATTTCATCTACGCTACAACAAAGCTCGT
CGGTCGAGACGCCGCAGCACCAGCAACCGCGCGAAGCGGCCTCAGTAGGA
GGCTTAAA
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