mRNA_F-serratus_M_contig902.20438.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig902.20438.1
Unique NamemRNA_F-serratus_M_contig902.20438.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.270e-24
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = -1
Query:    2 VDNEESLEMSLETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 229
            V+ + S   SLE++ERYHFRASCLSNLAEVCQLLRWSLG+FS D+VDL  GVL  ET  SEE+ LARRGA+FLL R
Sbjct: 1340 VNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGR 1415          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.830e-23
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = -1
Query:    2 SLETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 202
            SLE++ER HFRASCLSNLAEVCQLLRWSLG+FS D+VDL  GVL  ET  SEE+ LARRGA+FLL R
Sbjct: 1302 SLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGR 1368          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.330e-18
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = -1
Query:    2 SLETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 202
            S+ETRER HFRASCLSNLAEVC LLRWSL  +++D+VDL +G L +ET + EEA   RR +A+LLSR
Sbjct:  960 SVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSR 1026          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 9.370e-14
Identity = 33/57 (57.89%), Postives = 50/57 (87.72%), Query Frame = -1
Query:    8 HFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 178
            +FR+SCLSNLAEVC LL+WSL +++QDI DL +G+L+ME ++S+EA+ ARRG+ +++
Sbjct:  130 NFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIM 186          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: K3X8E9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8E9_GLOUD)

HSP 1 Score: 65.1 bits (157), Expect = 2.390e-9
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -1
Query:    8 RASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 172
            RASCLSNLAEVC LL+WSL  F  D++    G+L++E  ++E  V  RRGAAFLL
Sbjct:  914 RASCLSNLAEVCVLLQWSLQPFLVDVMTCVFGILQLELDATESVVAVRRGAAFLL 968          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A1V9ZHW9_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHW9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.960e-8
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = -1
Query:    8 LETRERYHFRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 199
            +E+ E   FRASCLSNLAEVC LLRW++  F  D++    GVL +E   S+  V  RRGA F+L
Sbjct:  827 VESLEDATFRASCLSNLAEVCGLLRWAIHPFLADVLLCVKGVLEVERGRSDAHVALRRGAVFVL 890          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A485LCX3_9STRA (Aste57867_18971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.020e-7
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = -1
Query:    8 FRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 175
            FRASCLSNLAEVC LL+W++  +  D+V    G+L +E   ++     RRGA FLL
Sbjct:  802 FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLL 857          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A8K1C9E9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9E9_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 6.090e-7
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = -1
Query:    8 RASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLA-RRGAAFLL 172
            RASCLSNLAEVC LL W+L  F+ D++    G+L++E   + ++V++ RRGA FLL
Sbjct:  917 RASCLSNLAEVCALLGWALAPFAVDVLTCVFGILQLELDMASKSVVSVRRGAVFLL 972          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-6
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = -1
Query:    8 FRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLL 175
            FRASCLSNLAEVC LL+WS+  +  D+V    G+L +   +++     RRGA FLL
Sbjct:  809 FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLL 864          
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Match: A0A067D1X5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D1X5_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-6
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = -1
Query:    2 FRASCLSNLAEVCQLLRWSLGKFSQDIVDLGVGVLRMETSSSEEAVLARRGAAFLLSR 175
            +RASCLSNLAEVC LLRW++  F  D++     VL++E   +E  +  RRGA F+L++
Sbjct:  845 YRASCLSNLAEVCGLLRWAIHPFLTDVLLCVKDVLQVERGRAEPQIALRRGAVFVLNQ 902          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FHX3_ECTSI2.270e-2471.05RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPL2_9PHAE6.830e-2376.12RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA1.330e-1865.67RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3YE87_HETAK9.370e-1457.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3X8E9_GLOUD2.390e-958.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZHW9_9STRA3.960e-851.56RTP1_C1 domain-containing protein n=1 Tax=Achlya h... [more]
A0A485LCX3_9STRA6.020e-750.00Aste57867_18971 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1C9E9_PYTOL6.090e-751.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XAH2_9STRA1.110e-650.00RTP1_C1 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A067D1X5_SAPPC1.160e-648.28Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig902contigF-serratus_M_contig902:173108..173570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig902.20438.1prot_F-serratus_M_contig902.20438.1Fucus serratus malepolypeptideF-serratus_M_contig902 173173..173472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932631.8631349-UTR-F-serratus_M_contig902:173107..1731721622932631.8631349-UTR-F-serratus_M_contig902:173107..173172Fucus serratus maleUTRF-serratus_M_contig902 173108..173172 +
1690964395.3423095-UTR-F-serratus_M_contig902:173107..1731721690964395.3423095-UTR-F-serratus_M_contig902:173107..173172Fucus serratus maleUTRF-serratus_M_contig902 173108..173172 +
1622932631.919327-UTR-F-serratus_M_contig902:173472..1735701622932631.919327-UTR-F-serratus_M_contig902:173472..173570Fucus serratus maleUTRF-serratus_M_contig902 173473..173570 +
1690964395.3644378-UTR-F-serratus_M_contig902:173472..1735701690964395.3644378-UTR-F-serratus_M_contig902:173472..173570Fucus serratus maleUTRF-serratus_M_contig902 173473..173570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932631.9043381-CDS-F-serratus_M_contig902:173172..1734721622932631.9043381-CDS-F-serratus_M_contig902:173172..173472Fucus serratus maleCDSF-serratus_M_contig902 173173..173472 +
1690964395.351917-CDS-F-serratus_M_contig902:173172..1734721690964395.351917-CDS-F-serratus_M_contig902:173172..173472Fucus serratus maleCDSF-serratus_M_contig902 173173..173472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig902.20438.1

>prot_F-serratus_M_contig902.20438.1 ID=prot_F-serratus_M_contig902.20438.1|Name=mRNA_F-serratus_M_contig902.20438.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MRSTPTPRSTISCENFPRDHRNSWHTSARFDKQLARKWYRSLVSSDISKD
SSLSTVPSRSISPPVLSSDSFCPRLRPTSRRPSCLTLVAVIDRSFSSTR*
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mRNA from alignment at F-serratus_M_contig902:173108..173570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig902.20438.1 ID=mRNA_F-serratus_M_contig902.20438.1|Name=mRNA_F-serratus_M_contig902.20438.1|organism=Fucus serratus male|type=mRNA|length=463bp|location=Sequence derived from alignment at F-serratus_M_contig902:173108..173570+ (Fucus serratus male)
GCCGGCTCAAGAGGAAGGCAGCACCTCGCCTGGCGAGGACGGCTTCCTCC GAACTCGAGGTCTCCATGCGCAGCACGCCCACGCCCAGGTCCACGATATC CTGCGAAAACTTTCCCAGAGACCACCGCAACAGCTGGCATACCTCGGCGA GATTCGACAAGCAACTCGCTCGGAAATGGTATCGCTCCCTGGTCTCCAGC GACATTTCCAAGGATTCTTCATTGTCGACTGTTCCATCACGCTCGATATC GCCTCCAGTTCTCTCGTCGGACTCTTTTTGCCCGAGGCTTCGCCCGACAT CTCGTCGCCCGTCTTGTTTGACATTGGTCGCGGTAATTGACCGATCCTTC AGCTCCACGCGATGAGGAGCTTCCCCCAAGCACGAGGCTCTCCCCCGCGT CGCCGGAGAACCCGGGGACATGCGATTTCCTGCCCCTGACCTGTCGCGCG TCGAACGCTCCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig902:173108..173570+

>mRNA_F-serratus_M_contig902.20438.1 ID=mRNA_F-serratus_M_contig902.20438.1|Name=mRNA_F-serratus_M_contig902.20438.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig902:173108..173570+ (Fucus serratus male)
ATGCGCAGCACGCCCACGCCCAGGTCCACGATATCCTGCGAAAACTTTCC
CAGAGACCACCGCAACAGCTGGCATACCTCGGCGAGATTCGACAAGCAAC
TCGCTCGGAAATGGTATCGCTCCCTGGTCTCCAGCGACATTTCCAAGGAT
TCTTCATTGTCGACTGTTCCATCACGCTCGATATCGCCTCCAGTTCTCTC
GTCGGACTCTTTTTGCCCGAGGCTTCGCCCGACATCTCGTCGCCCGTCTT
GTTTGACATTGGTCGCGGTAATTGACCGATCCTTCAGCTCCACGCGATGA
ATGCGCAGCACGCCCACGCCCAGGTCCACGATATCCTGCGAAAACTTTCC
CAGAGACCACCGCAACAGCTGGCATACCTCGGCGAGATTCGACAAGCAAC
TCGCTCGGAAATGGTATCGCTCCCTGGTCTCCAGCGACATTTCCAAGGAT
TCTTCATTGTCGACTGTTCCATCACGCTCGATATCGCCTCCAGTTCTCTC
GTCGGACTCTTTTTGCCCGAGGCTTCGCCCGACATCTCGTCGCCCGTCTT
GTTTGACATTGGTCGCGGTAATTGACCGATCCTTCAGCTCCACGCGATGA
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