mRNA_F-serratus_M_contig901.20422.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig901.20422.1
Unique NamemRNA_F-serratus_M_contig901.20422.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig901.20422.1 vs. uniprot
Match: D7FW43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW43_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-6
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:    2 DVCLERAVINFGIGVVTAGLTGIVLTHSP 88
            DVCLER VINFG GVV AGL G+VLT SP
Sbjct:   20 DVCLERTVINFGAGVVAAGLAGVVLTRSP 48
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig901.20422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW43_ECTSI1.690e-679.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig901contigF-serratus_M_contig901:340328..341113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size289
Cds size159
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig901.20422.1prot_F-serratus_M_contig901.20422.1Fucus serratus malepolypeptideF-serratus_M_contig901 340328..340983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932628.2989817-CDS-F-serratus_M_contig901:340327..3404071622932628.2989817-CDS-F-serratus_M_contig901:340327..340407Fucus serratus maleCDSF-serratus_M_contig901 340328..340407 +
1690964393.3314168-CDS-F-serratus_M_contig901:340327..3404071690964393.3314168-CDS-F-serratus_M_contig901:340327..340407Fucus serratus maleCDSF-serratus_M_contig901 340328..340407 +
1622932628.3199353-CDS-F-serratus_M_contig901:340904..3409831622932628.3199353-CDS-F-serratus_M_contig901:340904..340983Fucus serratus maleCDSF-serratus_M_contig901 340905..340983 +
1690964393.3431702-CDS-F-serratus_M_contig901:340904..3409831690964393.3431702-CDS-F-serratus_M_contig901:340904..340983Fucus serratus maleCDSF-serratus_M_contig901 340905..340983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932628.334073-UTR-F-serratus_M_contig901:340983..3411131622932628.334073-UTR-F-serratus_M_contig901:340983..341113Fucus serratus maleUTRF-serratus_M_contig901 340984..341113 +
1690964393.3521402-UTR-F-serratus_M_contig901:340983..3411131690964393.3521402-UTR-F-serratus_M_contig901:340983..341113Fucus serratus maleUTRF-serratus_M_contig901 340984..341113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig901.20422.1

>prot_F-serratus_M_contig901.20422.1 ID=prot_F-serratus_M_contig901.20422.1|Name=mRNA_F-serratus_M_contig901.20422.1|organism=Fucus serratus male|type=polypeptide|length=53bp
GRLFGEGCDQLRDWSCHCGFDRHRPNTLSGVNVIGTQLRELINSGLTRCR
LV*
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mRNA from alignment at F-serratus_M_contig901:340328..341113+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig901.20422.1 ID=mRNA_F-serratus_M_contig901.20422.1|Name=mRNA_F-serratus_M_contig901.20422.1|organism=Fucus serratus male|type=mRNA|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig901:340328..341113+ (Fucus serratus male)
GGACGTTTGTTTGGAGAGGGCTGTGATCAACTTCGGGATTGGAGTTGTCA
CTGCGGGTTTGACCGGCATCGTCCTAACACGTGAGTATCTGGATTTGAAA
GCTACTCTGTTTCGTATAAATAAACTATTTAGTACGAAGTACAAATTAGA
ACAGTGGAAAAGTTTCACGAGTACCCGATTTTTGTGTCTTGACCTACAGT
AGTACCGCAGGACCATTGCCACCAAGGCATCACCCGAATACTGAAGTGTG
GTACTGCTTGCGTCGAAGTCCGAGTAGCCAACGAAGTATGGCCTGATGGT
TTTCATATTCCTTCTCCCAATAGAAATCGGTAGACTCAAGATGGTATACT
CCCAACGTTTTAAAATATGTTGCAAGCATTCATACCGTAAAGGGAAGTTG
TGTCAAAACGTTTACTGCGCTGTAGTTGGGAACATTACATTCGGAAACAG
CCAATGTTCAATTTCTCACCTACACAAGTGAACGTTTTGACGATTTCCCC
CCTGCCTGAGGGATGCTCAGAAGGTTTAGATGCGTTCAGTTTTTTCTTAA
AAAAACTCTTGCTCGTGCATCTTCCAGACTCTCCGGAGTGAACGTCATCG
GTACGCAATTGCGTGAGCTGATAAACTCGGGACTGACCCGATGTCGGTTG
GTATAAACGGAAGCCGTCGCGGAAAGCGGGAGGAACCCCGTGAGTAAGCC
CAGATTCAGCCTGACTGTGGAGAATGAGCAGGCTGACGCGGGACGGGACG
GCCGAACCTGTCCCACGTGACCAAATTCTCAGGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig901:340328..341113+

>mRNA_F-serratus_M_contig901.20422.1 ID=mRNA_F-serratus_M_contig901.20422.1|Name=mRNA_F-serratus_M_contig901.20422.1|organism=Fucus serratus male|type=CDS|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig901:340328..341113+ (Fucus serratus male)
GGACGTTTGTTTGGAGAGGGCTGTGATCAACTTCGGGATTGGAGTTGTCA
CTGCGGGTTTGACCGGCATCGTCCTAACACGGACGTTTGTTTGGAGAGGG
CTGTGATCAACTTCGGGATTGGAGTTGTCACTGCGGGTTTGACCGGCATC
GTCCTAACACACTCTCCGGAGTGAACGTCATCGGTACGCAATTGCGTGAG
CTGATAAACTCGGGACTGACCCGATGTCGGTTGGTATAAACTCTCCGGAG
TGAACGTCATCGGTACGCAATTGCGTGAGCTGATAAACTCGGGACTGACC
CGATGTCGGTTGGTATAA
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