mRNA_F-serratus_M_contig90.20405.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig90.20405.1
Unique NamemRNA_F-serratus_M_contig90.20405.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig90.20405.1 vs. uniprot
Match: D7FKI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.180e-27
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 2 
Query:   95 PTPMLLLVLLAMMVQLIAA---DFEMASGPGTIRRQDRDPFKDGYFNLIIACFALMFCFIACMFGVRLCLGKKRGNTSKSFFLVA 340
            P+ + LLVLLA ++ ++ A   DFE+++G G+IR QDRDPFK+GYFN+II+CFALMF FI CMF VR+CLGKKRGN S SFFLVA
Sbjct:    3 PSMINLLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI6_ECTSI4.180e-2765.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:625934..628223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001930.1
Exons2
Model size1147
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20405.1prot_F-serratus_M_contig90.20405.1Fucus serratus malepolypeptideF-serratus_M_contig90 626738..626995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932626.4856522-UTR-F-serratus_M_contig90:625933..6267371622932626.4856522-UTR-F-serratus_M_contig90:625933..626737Fucus serratus maleUTRF-serratus_M_contig90 625934..626737 -
1690964392.398339-UTR-F-serratus_M_contig90:625933..6267371690964392.398339-UTR-F-serratus_M_contig90:625933..626737Fucus serratus maleUTRF-serratus_M_contig90 625934..626737 -
1622932626.5491242-UTR-F-serratus_M_contig90:626995..6269991622932626.5491242-UTR-F-serratus_M_contig90:626995..626999Fucus serratus maleUTRF-serratus_M_contig90 626996..626999 -
1690964392.4198031-UTR-F-serratus_M_contig90:626995..6269991690964392.4198031-UTR-F-serratus_M_contig90:626995..626999Fucus serratus maleUTRF-serratus_M_contig90 626996..626999 -
1622932626.5677493-UTR-F-serratus_M_contig90:628142..6282231622932626.5677493-UTR-F-serratus_M_contig90:628142..628223Fucus serratus maleUTRF-serratus_M_contig90 628143..628223 -
1690964392.429802-UTR-F-serratus_M_contig90:628142..6282231690964392.429802-UTR-F-serratus_M_contig90:628142..628223Fucus serratus maleUTRF-serratus_M_contig90 628143..628223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932626.5352943-CDS-F-serratus_M_contig90:626737..6269951622932626.5352943-CDS-F-serratus_M_contig90:626737..626995Fucus serratus maleCDSF-serratus_M_contig90 626738..626995 -
1690964392.409691-CDS-F-serratus_M_contig90:626737..6269951690964392.409691-CDS-F-serratus_M_contig90:626737..626995Fucus serratus maleCDSF-serratus_M_contig90 626738..626995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig90.20405.1

>prot_F-serratus_M_contig90.20405.1 ID=prot_F-serratus_M_contig90.20405.1|Name=mRNA_F-serratus_M_contig90.20405.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MSSPTPMLLLVLLAMMVQLIAADFEMASGPGTIRRQDRDPFKDGYFNLII
ACFALMFCFIACMFGVRLCLGKKRGNTSKSFFLVA*
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mRNA from alignment at F-serratus_M_contig90:625934..628223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig90.20405.1 ID=mRNA_F-serratus_M_contig90.20405.1|Name=mRNA_F-serratus_M_contig90.20405.1|organism=Fucus serratus male|type=mRNA|length=2290bp|location=Sequence derived from alignment at F-serratus_M_contig90:625934..628223- (Fucus serratus male)
GCCCTCCGCCAATACAGCATCCGAACTACGTGGTAGCTTCTCGGATAGGA
AGTCCAGACGGCTCAAATTCTTGAAAAAAAGGTGGGGAACTAGTATGAGT
GGCCCAGTCCTCTTTCCAATCGTTTTGATGAAACCTCTTCTTGAATGCGT
CCTAGACTTGCTAACTGCGTAGTGTAGTTGCAGTGCCGCGTAGTTGAATC
GAATTTCATGCTCTAATTATTCTTAGGTCAAGACCAGCCATAGTAACCTC
CCGTAACCTAACGAGCCAGCTTTGAAGAACGATAGACCGCCGCAGGCTTA
CAGCTTACGGCTGTCTGAGTTTTTGGGTGAGATTCACACAGATTGTTGCA
TTGTTGCTCTGTACGAGGTAGTTTTGGTTTGTCTAGTTGTGACGTTTCTT
ACTGCAGTATGAAGACCAAGGGCCGTTACCTTTTCTATCGTACCCCAGGA
TATACTCCAGTTTTTGATTTGTTACAATTACTCAATTGCCAGTCACTCTC
GCCGAACGCAGAGGGTACGGGAGTCCCACTCTTCATCGCAGGCATAACAA
AACCGTCTTCGCATACTGTACTTTTGTCTCCGATTCCGAGTCGTAAGTTT
TTAGCTCTGCCTGGGATCGAAGCCTCGCTTTTTGTTTATTCTGTACCAGG
TATGCATGTACAAATGTTTAGTTTCGTCGTCCCATACCAATATTTTCAGT
ACAATAGTAGTACAATTTTCAACATGTACGAGTACGTACTTGTCTACAGT
AGTACCCTCGATGTCTACTGCTTACACTGTACCAGGTACTGTATACACAA
GTAGTCTTCCCCTTTGCTTCATTACTCCCTACCTGGTATTTGTGGTATTA
GACTACAACAGATAGGTACTTGTATTACTGGTGCACCCACAGACTTCATA
CGTACAGTATCATGCGTATCACGTAATCTTACAGACTGTCAGTTGTTGTA
TACCGGGCTTGAGAGAAACTCGTCCTCTACTGGAAATAAAAGGTTCCGCT
AAGGCCGATCGTGCGCTCATTGTTGTAAATGCAACTATTAATACTCTGTA
CTACTGTATCATAGCTACAGGAGGGTTTGTTTGCGGGCTCATTTCCCGCC
AAGGAGCTCGACCGTCGCAGTCGCCTCTCTTTTTACGTACATTTTTCGCG
CGTTGAGATGTTTTCCTAATTCAATGATCTTTCCCGTCGCCCCCTCTTTC
CTTTCCCAATTCAAAATAAAACAGGAAGATGTCTTCGCCCACGCCGATGC
TGCTTCTCGTGCTGTTGGCGATGATGGTTCAGCTCATTGCGGCTGATTTC
GAGATGGCAAGCGGGCCGGGAACCATCAGGAGACAGGACCGCGACCCTTT
CAAGGACGGTTACTTCAACCTCATCATCGCGTGCTTCGCTCTGATGTTCT
GCTTCATCGCTTGCATGTTCGGTGTCCGCCTGTGCCTCGGCAAGAAGCGC
GGTAACACCTCCAAGTCTTTCTTTTTGGTAGCCTAAGTTGGGTGATGAGG
GGTGGGAGCAAAAAAGCACACGTTTACAGAGAGCAACGAATCAAGATCTA
CAGCACTAGACTATGTACGTGAACTTGCTTCCTTGCTGTTGATGCTCAGT
TTTTGGTGTTTGGTGTGGATAGCTTGGGGAAGAGGAAGGAGGAACAGGAT
GCCACGAGCGATGGGACGGTGGGAAATAAGTCGAGTGGGTGAGGTCAGGA
TGATGCAGACTTGTGGGATTATCTCGCTTCTGGTTTATCTAAGTTCTGCA
CAGGTACATTTCTGGGGTCCAAGCACGCGGTTTGGTTGAGAGAGCGCACA
CACTTATTGCCGATTCGTGGAAGTTGCTGGAAACCGTTCCCTGCCTGTTG
TGTTCACTTCTTTTTAATTTCTATAATATATAGTAGTATTTGGGAGCCGA
GAGAAGCGACATGTCGTTTCACGAAACTAAGGCGTGTACTTGTAATAACA
GTAGAAATAATAACCGTGAAGAAAGTTGGCACATCGTGGGCCAGCGTTTT
GCGCAAGCCAGACGGAAAGTCGTGAGCGGGTGCGCTCATGACGACCCTGG
GATGTATAATGATCGCTAAATAATGTGGTTCGTTCTTCGTACTTTATTAT
TATCAGGTTGACTAATATTTTAGACACTATTCCCCCAAAGCGTACCAGGT
ACAGTACTTCGTGTGCACTTTCTGCTGCAGACTCCAGGCAGCAAGAGGTG
GAAGTTTGGAAGTTTGTATATGCAAAAAAACGTCTTCGCCCCGACTTTAG
CGTTCAACCTCGCACGGACGTGCGTATTTGTGGCGGAATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig90:625934..628223-

>mRNA_F-serratus_M_contig90.20405.1 ID=mRNA_F-serratus_M_contig90.20405.1|Name=mRNA_F-serratus_M_contig90.20405.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig90:625934..628223- (Fucus serratus male)
ATGTCTTCGCCCACGCCGATGCTGCTTCTCGTGCTGTTGGCGATGATGGT
TCAGCTCATTGCGGCTGATTTCGAGATGGCAAGCGGGCCGGGAACCATCA
GGAGACAGGACCGCGACCCTTTCAAGGACGGTTACTTCAACCTCATCATC
GCGTGCTTCGCTCTGATGTTCTGCTTCATCGCTTGCATGTTCGGTGTCCG
CCTGTGCCTCGGCAAGAAGCGCGGTAACACCTCCAAGTCTTTCTTTTTGG
TAGCCTAAATGTCTTCGCCCACGCCGATGCTGCTTCTCGTGCTGTTGGCG
ATGATGGTTCAGCTCATTGCGGCTGATTTCGAGATGGCAAGCGGGCCGGG
AACCATCAGGAGACAGGACCGCGACCCTTTCAAGGACGGTTACTTCAACC
TCATCATCGCGTGCTTCGCTCTGATGTTCTGCTTCATCGCTTGCATGTTC
GGTGTCCGCCTGTGCCTCGGCAAGAAGCGCGGTAACACCTCCAAGTCTTT
CTTTTTGGTAGCCTAA
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