mRNA_F-serratus_M_contig90.20397.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig90.20397.1
Unique NamemRNA_F-serratus_M_contig90.20397.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 1.800e-162
Identity = 235/252 (93.25%), Postives = 243/252 (96.43%), Query Frame = 1 
Query:   49 TNKKGGRKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEEVEIEEE 804
            TNKKGGRKGNKKKTVDP TLKEWYDIKAPSIFQVR PGKTLVTRTKGTKIASEGLKGRVFEFSLGDLN DEDLGYRK+KLCCEDVQGTS LTNFHGMDLTRDKLCSLIKKWQTLIE QVDVRTTDGYLLRI+CIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIM+EEASKCDLRELVLKFIPENISGEILKAVQSI+PMQNVYIRKVKALKKPKFDL KLMEMHGDNTTED+G+EMEREDEGEE  + +E
Sbjct:    6 TNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)

HSP 1 Score: 363 bits (932), Expect = 1.600e-119
Identity = 180/238 (75.63%), Postives = 204/238 (85.71%), Query Frame = 1 
Query:   67 RKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEG 780
            +KG KKK  DPF  KEWYD+KAPS F  R PGKTL+TRT+GTKIASEGL+GRVFEFSL DLN+DE+  YRKIKLC E+VQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEA+VDV+TTDGY +R+ CIGFTK+  NQIK+T YAQASQ++A+RKKM DIMTEEA KCDL+ELV KFIPE+IS EI KA Q IFP+QNV+IRKVK LKKP+FDL+KLMEMHGD   EDVG  + R  EG
Sbjct:   38 KKGGKKKITDPFLKKEWYDVKAPSFFSNRTPGKTLITRTQGTKIASEGLQGRVFEFSLADLNHDEEQAYRKIKLCVEEVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEARVDVKTTDGYFMRLFCIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)

HSP 1 Score: 356 bits (913), Expect = 5.070e-117
Identity = 181/247 (73.28%), Postives = 202/247 (81.78%), Query Frame = 1 
Query:   49 TNKKGGRKGN-KKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEE 786
            T KK G+KG  KKKTVDPFT KEWYDIKAPS F VR  GKTL+TRT GTKIASEGLKGRVFE SLGDLNNDE+ G+RKIKLCCEDVQGT+CLT FHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGY LR+ CIGFTKK D Q+K TCYA+A+Q+RA+R+KM +IMT+E SKCDL+ELV KF+ + +S  I KA + I P+QNV IRK K LKKPKFDL KLMEMH    TED G  + R    EE
Sbjct:    6 TQKKIGKKGKGKKKTVDPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGTKIASEGLKGRVFEVSLGDLNNDEEHGFRKIKLCCEDVQGTNCLTTFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYYLRVFCIGFTKKTDGQVKATCYAKAAQVRAIRRKMTEIMTDECSKCDLKELVQKFVLDTVSERITKAARGIVPLQNVLIRKCKVLKKPKFDLTKLMEMH----TEDAGAAVARPAAAEE 248
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: F0YJC6_AURAN (40S ribosomal protein S3a n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC6_AURAN)

HSP 1 Score: 337 bits (864), Expect = 1.550e-109
Identity = 166/241 (68.88%), Postives = 192/241 (79.67%), Query Frame = 1 
Query:   67 RKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEEV 789
            +KG KKK  DPF  KEWY+IKAPS+F  R  GKTLVTRT+GTKIAS+ LKGRVF+ SL DLNNDED  YRKIKL CED+QG +CLTNFHGMD+TRDKL SLIKKWQTLIE  VDV+TTDGY LR+ CI FT K  NQI + CYA ++Q+R +RKKM +IM +EA+KCDL+ELVLK IPE +  EI KA   IFP+QNV++RKVK LKKPKFDL KLME+HGD   ED G  + RE EGEEV
Sbjct:   13 KKGGKKKATDPFLKKEWYEIKAPSMFSQRNAGKTLVTRTQGTKIASDALKGRVFDLSLADLNNDEDQTYRKIKLVCEDIQGYNCLTNFHGMDMTRDKLASLIKKWQTLIEGNVDVKTTDGYTLRMFCIAFTTKMPNQIAKMCYANSAQVRLIRKKMVEIMRDEATKCDLKELVLKLIPEYMGTEIEKACAGIFPLQNVFVRKVKVLKKPKFDLTKLMELHGDAGNEDSGAAVPREGEGEEV 253
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: C5XD92_SORBI (40S ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI)

HSP 1 Score: 333 bits (855), Expect = 2.850e-108
Identity = 167/242 (69.01%), Postives = 198/242 (81.82%), Query Frame = 1 
Query:   64 GRKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEEV 789
            G+KG KKKTVDPF+ K+WYDIKAPS+F VR  GKTLV+RT+GTKIASEGLK RVFE SL DL +DED  YRKI+L  ED+QG + LTNF GM  T DKL SL+KKWQTLIEA VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I  EI KA  SIFP+QNV+IRKVK LK PKFD+ KLME+HGD   EDVGV+M+R  EG+E 
Sbjct:   12 GKKGGKKKTVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDIQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEA 253
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: A0A7S4E908_9STRA (40S ribosomal protein S3a n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E908_9STRA)

HSP 1 Score: 334 bits (856), Expect = 5.640e-108
Identity = 170/251 (67.73%), Postives = 198/251 (78.88%), Query Frame = 1 
Query:   67 RKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEEVEIEEE*TKPA 819
            +KG KKK VDPF  KEWY+IKAPS+F VR  GKTLVTRT+GTKIAS+ LKGRVFE SLGDLNNDED  YRKIKL CEDVQG +CLTNFHGM +TRDKL SLIKKWQTL+E  VDV+TTDGY LR+  IGFT K  NQ+ + CYA ++Q+R +RKKM D+M EEASKCDL++LVLK IPE + GEI KA   IFPMQNV++RKVK LKKPKFDLVKLME+H     ED G + E + E E V  E++ T+ A
Sbjct:   39 KKGGKKKAVDPFLKKEWYEIKAPSMFSVRNCGKTLVTRTQGTKIASDALKGRVFEISLGDLNNDEDQTYRKIKLICEDVQGYNCLTNFHGMGMTRDKLASLIKKWQTLVEGNVDVKTTDGYTLRMFAIGFTTKMPNQVSKMCYANSAQVRQIRKKMVDVMREEASKCDLKDLVLKLIPEYMGGEIEKACAGIFPMQNVFVRKVKVLKKPKFDLVKLMELHSGEGAEDSGDKAEGDAE-EVVAAEKDITQAA 288
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: I1HW94_BRADI (40S ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI)

HSP 1 Score: 333 bits (853), Expect = 6.100e-108
Identity = 167/242 (69.01%), Postives = 196/242 (80.99%), Query Frame = 1 
Query:   64 GRKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEEV 789
            GRKG+KKK VDPFT KEWYDIKAP +F  R  GKTLV+RT+GTKIASEGLK RVFE SL DL NDED  YRKI+L  EDVQG + LTNF GMD T DKL SL+KKWQTLIEA VDV+TTD Y++R+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM  +A+ CDL+ELV KFIPE I  EI KA  SIFP+QNVY+RKVK LK PKFDL KLME+HGD   EDVGV+++R  EG+E 
Sbjct:   12 GRKGSKKKIVDPFTKKEWYDIKAPLLFNTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMIRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEA 253
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BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: RS3A_ORYSJ (40S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4479 RepID=RS3A_ORYSJ)

HSP 1 Score: 332 bits (851), Expect = 1.100e-107
Identity = 166/240 (69.17%), Postives = 195/240 (81.25%), Query Frame = 1 
Query:   64 GRKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGE 783
            G+KG+KKKTVDPF  K+WYDIKAPS+F VR  GKTLV+RT+GTKIASEGLK RVFE SL DL NDED  YRKI+L  EDVQG + LTNF GM  T DKL SL+KKWQTLIEA VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM  +AS CDL+ELV KFIPE I  EI KA  SIFP+QNV++RKVK LK PKFDL KLME+HGD   ED+G +++R  E E
Sbjct:   12 GKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDE 251
[Close]
BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: A0A812NHF5_SYMMI (40S ribosomal protein S3a n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NHF5_SYMMI)

HSP 1 Score: 331 bits (849), Expect = 2.200e-107
Identity = 173/239 (72.38%), Postives = 197/239 (82.43%), Query Frame = 1 
Query:   64 GRKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNN-DEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQ-IKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKF--IPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMER 768
            GRKG KKKTVDPF+ KE Y +KAPSIF  R  G+T++T+T GTKIASEGLKGRVFE SL DLN  DE  GYRKIKL CEDV G   LTNFHGMD+TRDKLCSLI+KWQTLIEA VDVRTTDGY+LR+ CIGFTKKQ NQ  K TCYAQ+ Q+RA+R+KM DIMTEEASKCDL+ELV KF  +PE+I  EI KA QSIFP+QNV IRKVK L+KPKFDLVKLME+HGD+  ED G  +++
Sbjct:    8 GRKGGKKKTVDPFSRKETYQVKAPSIFATRNAGRTIITKTIGTKIASEGLKGRVFEVSLADLNGGDESQGYRKIKLVCEDVNGYEVLTNFHGMDITRDKLCSLIRKWQTLIEAFVDVRTTDGYVLRMFCIGFTKKQGNQQAKSTCYAQSGQVRAIRRKMFDIMTEEASKCDLKELVQKFCSMPESIGHEIEKACQSIFPLQNVCIRKVKVLRKPKFDLVKLMELHGDSG-EDTGAALDK 245
[Close]
BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Match: A0A7S1TRR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRR2_9STRA)

HSP 1 Score: 331 bits (848), Expect = 3.330e-107
Identity = 162/243 (66.67%), Postives = 196/243 (80.66%), Query Frame = 1 
Query:   64 GRKGNKKKTVDPFTLKEWYDIKAPSIFQVRMPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPENISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVGVEMEREDEGEEVE 792
            G+KG KKK +DPF+ KEWY + AP  F  R+ GKTLV RT GTKIAS+ LKGRVFE +L DLN DED  YRKI+L CEDVQG + LTNFHGMD+TRDK+CS+I+KWQTLIEA+ DVRTTDGY+LR+ CIGFTKK  +Q+K+ CYAQ+SQI+A+R++M + MTEEASKCDLRELVLKFIPE I  +I KA Q+I+P+QNV+IRKVK LKKPKFD+VK ME+HGD  T         ED+GE V+
Sbjct:   29 GKKGGKKKIIDPFSRKEWYSVVAPGFFSNRVAGKTLVNRTAGTKIASDALKGRVFEVNLADLNKDEDRAYRKIRLVCEDVQGDNVLTNFHGMDMTRDKICSVIRKWQTLIEARCDVRTTDGYILRMFCIGFTKKSQDQLKKACYAQSSQIKAIRRRMVERMTEEASKCDLRELVLKFIPEVIGEDIEKACQNIYPLQNVFIRKVKVLKKPKFDIVKFMELHGDMAT--------AEDKGELVD 263
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKH7_ECTSI1.800e-16293.2540S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2Y1J4_9STRA1.600e-11975.6340S ribosomal protein S3a n=1 Tax=Fibrocapsa japon... [more]
A0A835Z1K4_9STRA5.070e-11773.2840S ribosomal protein S3a n=1 Tax=Tribonema minus ... [more]
F0YJC6_AURAN1.550e-10968.8840S ribosomal protein S3a n=1 Tax=Aureococcus anop... [more]
C5XD92_SORBI2.850e-10869.0140S ribosomal protein S3a n=6 Tax=Andropogoneae Ta... [more]
A0A7S4E908_9STRA5.640e-10867.7340S ribosomal protein S3a n=3 Tax=Pelagomonas calc... [more]
I1HW94_BRADI6.100e-10869.0140S ribosomal protein S3a n=6 Tax=Pooideae TaxID=1... [more]
RS3A_ORYSJ1.100e-10769.1740S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4... [more]
A0A812NHF5_SYMMI2.200e-10772.3840S ribosomal protein S3a n=2 Tax=Symbiodinium mic... [more]
A0A7S1TRR2_9STRA3.330e-10766.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:372285..377423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.3
Seed ortholog evalue7.3e-110
Seed eggNOG ortholog2880.D7FKH7
Preferred nameRS3A
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1890@1,KOG1628@2759
EC5.3.1.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons8
Model size1684
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20397.1prot_F-serratus_M_contig90.20397.1Fucus serratus malepolypeptideF-serratus_M_contig90 374134..376546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932623.918168-UTR-F-serratus_M_contig90:372284..3723321622932623.918168-UTR-F-serratus_M_contig90:372284..372332Fucus serratus maleUTRF-serratus_M_contig90 372285..372332 +
1690964391.2876494-UTR-F-serratus_M_contig90:372284..3723321690964391.2876494-UTR-F-serratus_M_contig90:372284..372332Fucus serratus maleUTRF-serratus_M_contig90 372285..372332 +
1622932623.9412856-UTR-F-serratus_M_contig90:372991..3730321622932623.9412856-UTR-F-serratus_M_contig90:372991..373032Fucus serratus maleUTRF-serratus_M_contig90 372992..373032 +
1690964391.3004763-UTR-F-serratus_M_contig90:372991..3730321690964391.3004763-UTR-F-serratus_M_contig90:372991..373032Fucus serratus maleUTRF-serratus_M_contig90 372992..373032 +
1622932623.959095-UTR-F-serratus_M_contig90:374069..3741331622932623.959095-UTR-F-serratus_M_contig90:374069..374133Fucus serratus maleUTRF-serratus_M_contig90 374070..374133 +
1690964391.3124144-UTR-F-serratus_M_contig90:374069..3741331690964391.3124144-UTR-F-serratus_M_contig90:374069..374133Fucus serratus maleUTRF-serratus_M_contig90 374070..374133 +
1622932624.0817978-UTR-F-serratus_M_contig90:376546..3774231622932624.0817978-UTR-F-serratus_M_contig90:376546..377423Fucus serratus maleUTRF-serratus_M_contig90 376547..377423 +
1690964391.3957338-UTR-F-serratus_M_contig90:376546..3774231690964391.3957338-UTR-F-serratus_M_contig90:376546..377423Fucus serratus maleUTRF-serratus_M_contig90 376547..377423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932623.9720793-CDS-F-serratus_M_contig90:374133..3741731622932623.9720793-CDS-F-serratus_M_contig90:374133..374173Fucus serratus maleCDSF-serratus_M_contig90 374134..374173 +
1690964391.3331184-CDS-F-serratus_M_contig90:374133..3741731690964391.3331184-CDS-F-serratus_M_contig90:374133..374173Fucus serratus maleCDSF-serratus_M_contig90 374134..374173 +
1622932623.9917762-CDS-F-serratus_M_contig90:374713..3747871622932623.9917762-CDS-F-serratus_M_contig90:374713..374787Fucus serratus maleCDSF-serratus_M_contig90 374714..374787 +
1690964391.3463864-CDS-F-serratus_M_contig90:374713..3747871690964391.3463864-CDS-F-serratus_M_contig90:374713..374787Fucus serratus maleCDSF-serratus_M_contig90 374714..374787 +
1622932624.0098042-CDS-F-serratus_M_contig90:375080..3752541622932624.0098042-CDS-F-serratus_M_contig90:375080..375254Fucus serratus maleCDSF-serratus_M_contig90 375081..375254 +
1690964391.3557868-CDS-F-serratus_M_contig90:375080..3752541690964391.3557868-CDS-F-serratus_M_contig90:375080..375254Fucus serratus maleCDSF-serratus_M_contig90 375081..375254 +
1622932624.0315833-CDS-F-serratus_M_contig90:375536..3756881622932624.0315833-CDS-F-serratus_M_contig90:375536..375688Fucus serratus maleCDSF-serratus_M_contig90 375537..375688 +
1690964391.3660488-CDS-F-serratus_M_contig90:375536..3756881690964391.3660488-CDS-F-serratus_M_contig90:375536..375688Fucus serratus maleCDSF-serratus_M_contig90 375537..375688 +
1622932624.0527678-CDS-F-serratus_M_contig90:375870..3759801622932624.0527678-CDS-F-serratus_M_contig90:375870..375980Fucus serratus maleCDSF-serratus_M_contig90 375871..375980 +
1690964391.3763008-CDS-F-serratus_M_contig90:375870..3759801690964391.3763008-CDS-F-serratus_M_contig90:375870..375980Fucus serratus maleCDSF-serratus_M_contig90 375871..375980 +
1622932624.0681214-CDS-F-serratus_M_contig90:376442..3765461622932624.0681214-CDS-F-serratus_M_contig90:376442..376546Fucus serratus maleCDSF-serratus_M_contig90 376443..376546 +
1690964391.3875735-CDS-F-serratus_M_contig90:376442..3765461690964391.3875735-CDS-F-serratus_M_contig90:376442..376546Fucus serratus maleCDSF-serratus_M_contig90 376443..376546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig90.20397.1

>prot_F-serratus_M_contig90.20397.1 ID=prot_F-serratus_M_contig90.20397.1|Name=mRNA_F-serratus_M_contig90.20397.1|organism=Fucus serratus male|type=polypeptide|length=218bp
MPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNNDEDLGYRKIKLCCEDV
QGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYLLRIACIG
FTKKQDNQIKQTCYAQASQIRAVRKKMCDIMTEEASKCDLRELVLKFIPE
NISGEILKAVQSIFPMQNVYIRKVKALKKPKFDLVKLMEMHGDNTTEDVG
VEMEREDEGEEVEIEEE*
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mRNA from alignment at F-serratus_M_contig90:372285..377423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig90.20397.1 ID=mRNA_F-serratus_M_contig90.20397.1|Name=mRNA_F-serratus_M_contig90.20397.1|organism=Fucus serratus male|type=mRNA|length=5139bp|location=Sequence derived from alignment at F-serratus_M_contig90:372285..377423+ (Fucus serratus male)
ACTTCTGTGAGCGAGTTCCTCTCTCCTCGCAGCCATGGCGGTAGGTGAGT
ACTTTGCAAGCAGGCAACAACGGATTTGTAATAACATCTGCGTGGTAAAG
GGTATCAATTTATGCTTGGAAAGAGTTTAGTGAAATGGAATGTCAGCATT
GTATGGATTTGAAGGGTTGAGAGAGGTCGATGACTGGCATCCCTGCTCCC
ATGTCACTCAGAGCAGCAGCCCCACTGATTTTTCCACGGTGTAGTTGCTC
TCAAAGGAGATCGGAGCAATAGAAGTAAGACAACATTAAGCCTCCCACAA
GTATTGATAGTTTTACGACGGTCGATGTCTTTCGCTGATATGAGCTGTTG
ATTTGAAGCTGTTGACATTTCTATTGTAACACTCTTTCTACAGACGTAAA
CCAAAATCATAATGAAGCTTACTCTATTTTACCAGTATGTTACAGGGTTT
CGTTCCTCAGTTTCCTCGACTTCTGTACCCCAGTTGGCCATCAAGAGCTA
GGCATCCTTTTAAGGATATTTGGACGACTGGTCGCTTCAAACCTTCCGCT
CGTGTCGACTCTCCACCATCTAAAGTTTAATGTTTTTGAGTTGTCACCTG
TATAGGGTGCGCTGCTTACTCCGCCTCCACTTTTTCGTTCGCCGTTTGCC
TAACTTTCCTGCCACTGTACTTTGCGTGGTATCTAAACCTAAATCTTCAC
AGGTAAGACAAACAAGAAGGGCGGCCGTAAGGGCAACAAAAAGAAAACGT
GAGTCACCACACAATTTCTTGGATTCTTTacAACACGAACGTCTTATTTT
CAtactggtacCTGGTATTACAGAGAATGCTTGCAGAAGTTAGAGGTTCC
CGTATAGACTAGACTATGTACTTATTACTAATAGTAGATGTACTGATACT
TGATCAGCCGGGTAAGGTTGCCAATCCTGCTCATGGTCAACTGAACAGGG
AAAGTACATATTTCCCTGTCCCCGTTCGCGCCTGAGAATGAGGTAGCGCG
AAATAGTTTAGGCAGTCCCGTCCCGCGTCAGCCTGCTAATCTCGATACCC
AGGCTGAATCTGGTGCCTCCAGGATCCCTCCTTATTTCCGCGGCGACGTC
CATTTCTTTATTTAAACCACCACACGCTATCGCGTCAGCCCTGAGTTTAT
TGGGTCACACAATTTCGTGCCGATGGCGTTTACTGCCGAGAGTCTCTCGG
CACATTGATATTTGCCTCTCTTTCCCACACCCGCTTGAAGTGGGCATGTT
GACCACTATTGATATGAAGTGGGCATGTTGAAAATACCGGCAGAATTCTA
CGCCGTAGTTCCCCGTACAGTAAAAATTGTTTGTACTGTAGACTTATAGA
ACCTCGTGACGATAATTTCGGCTTACCGTAACTTCCATCTATTATTATAG
TAGGAGTAATTATCATTGCAAAAGGTGTGGTGCTTACAAGTGCCGCACGC
TTCAATTTTGAAGGGGTCTTTCAAAGCATGCAAAATGTGTGCTTACACGT
ACCGTCGTACGCTGTGATTTCGAAGGGGTCTTCCAAAGCAAAAATATCGA
ACATGTACCACAAGCATCAATCACACTTTGTGGCTTTTTTTTACGTGCGA
CGTCGTAGCCCGATATTAGCGTCTGTATCAGCAAACAAACTATTCGCACA
CTATTTATGGCGCTCTAACGCCGTGGATTGTGTCTGCTGATACAGACGCT
AATATCAATGTCCACTTCAATTTTTGACGTTGTCGTGTTCCGGCCATTGC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTGTGGACCCTTTCAC
CCTCAAGGAGTGGTACGACATCAAGGCGCCCTCCATCTTCCAAGTGCGTA
TGCCGGGCAAGACCCTCGTTACGCGCACCAAGGGAACGAGTGAGTCAACC
CTTTCACCTTAAGCCAACGTTTGGGTTCAAACGTTTTCGTTGTTTATGTA
AAGATTTTGAGGCGTTACGGGCGTTGTTGTTAGCGCATTGGTTGCGTTAG
GAATCCCGCTCGTGGTCTGCTGAAAAAAATTTGCTCGTTCGGAGAAAAAT
AATTAGGAACTTGTGAAAAGAGTCGAGTTCAGGCTCCTGTGTGCAACGCA
CCTTAGGGACTAATATACCTGTCCCAGTTTTTTTAGAAAAAAATTTTGTT
GGCAGCACAGGAGGTGGCCATTTCAGCGATTCAGCAGTATGCCGCTGAGA
ATTATAAGGGAGGAATCGTTTCACCCTAGGGGGGATGTCGGAACACTCTT
ACCTGCATGGACAAGGTGTCTGCTTTGTATTATGTACGCTATTCGGAGAA
GTCCCAGATTGAAACTGCATGAATGGAACGACAACCCGGACGAGCTATAT
CGCATGTTAAACATACTATCGTGTCTCGACTGTATGGCGCTTGACTTTCA
CCGTGCTTGGCCGTCCTCTCATGAAACAGAGATCGCCTCCGAGGGGCTGA
AGGGGCGCGTGTTCGAGTTCTCTCTGGGCGACCTCAACAACGACGAGGAC
CTGGTGAGAGAGGAGACATGTGATCACCGTTCCTTTTCCAAGTATATAGT
CGCTAGACCCACCGGCGCGTGGACCACCCAATCTAGCACATTTGGTCTCA
TGGTAATGCAATCAACTCAGAAAGCTCTGTACTCTCTTTTTCGACACAAC
TCGTCCTGGTAATATCGTGTCTTGTCCAATGGCCGATGGGCTGTGAAATG
CGAGTCGCTTCTTCTACATTATCGATTTGTTTTAATACCTATAATGTCAA
GACCTCCGTAACCGTACTCTACAATACGCATATCATACTCTGGCAGGGGT
ACCGGAAGATTAAGCTTTGTTGCGAGGATGTCCAGGGCACCTCGTGCTTG
ACCAACTTCCATGGCATGGACCTTACGCGCGACAAGCTCTGCTCGCTAAT
CAAGAAGTGGCAGACGCTTATCGAGGCGCAGGTTGACGTCCGCACAACCG
ATGGATACCTTCTCCGGATCGTGAGTATCCTAGCTCTAAAGTAGCAGCTA
TCATACAAGTAACTGCTGGCGGGGCCACGTGAATTCTTACGTAAGAGGAC
CCTTCTTGATCGTTGCTACCCAATTTTTATCTTGAGAATTTAACTATGGG
ATGCTGTTTTCTTCTGAAGTGGCGAATTATCGTCCACCATGCGTTACAAC
CAAACATATGCGGCACACATGACAATCGAATATCTTGCCGTACGCAGATG
CTCCGCACCGCCGGATTAACCAACCCTACAACCGCACTGTGCTTTGCTTC
AGGCGTGCATCGGCTTCACAAAGAAGCAGGACAACCAGATCAAGCAGACA
TGCTACGCGCAGGCGTCGCAGATCCGAGCGGTTCGCAAGAAGATGTGCGA
CATCATGACGGAGGAAGCGTCCAAGTGTGACCTCAGGGAGCTCGTCCTGA
AGTTGTGAGTGGCGTTGAATGCTAGCCCGTTGGTTTACGTAAGCATTGCG
TATGGGTATCAAAGCATCCACCTCGCCGTGTGCATGCAGTTTGATGCAAT
ATCTCGCGGGTAAACGTGACATCGATCGTGGATACTTTCCTTCGTTTCTC
CCCTGACATCTCCGTGTGTCGTTCCCGATTTCGCAGCATCCCCGAAAACA
TCTCTGGAGAAATCCTGAAGGCTGTGCAAAGCATTTTCCCAATGCAGAAC
GTCTACATCCGCAAAGTCAAGGCGCTCAAGAAGCCCAAGTTCGACTGTAA
GTTTGCCTTACGCGGAATACCGCTTCTTTTTTCTAACAACTCTAATCTGA
AGGGGCATGGTAAAACGTCGACGCGTACCCGTTACTTTCTTTACCCCCCT
TGGATAGTTTTTGAGAGTTTTTAAAGCGCGATTACTACCCTATGGGACGT
CTCTTGAAACCTTGCTTCAGGTCACATTTCGAAGCTTGATAGAAATATTT
TTATCGTTGCCCCGGAAGACAAATAATGTCGAAGACCCCAGACTTTGCTT
TTATTTCTCATCGATGATGTAAATGCGTTGCAAATCTAGTGTGGGACATG
AAGTGCGCTTCTCTATTTAACGCTGTATTGTAAAGGCACTACTGCTCGAC
AAGGTGTAGTAACAAATGTTGCATTTTGTCGGCATCGTGCACTGACGTTC
GATACGACTGGCCTTACCCTCTGCTATGTTGTTGTGTCATGTGGGGCAAC
TATTGCAGTGGTTAAGCTTATGGAGATGCACGGCGATAACACTACCGAAG
ACGTCGGGGTGGAGATGGAGAGAGAAGACGAGGGCGAGGAAGTGGAGATA
GAGGAAGAGTGAACGAAGCCTGCCTTCCTTCATTTTGCCTTCTAGTCCAT
ATATGCCTCCGTCGCCTGTGGCATTTCGCCGATGATACCCGCCATTGGTT
ATGTCACTTTTCAATGTTCAGCATTGTTGGAGATTGGCGGGTTGTTCCAG
CAGGCGCGAGGTGGTCTAGGCTCGAGGGGTTTGGAATGGGGGAGGGGATG
TTGGGGAACACTGCATCAGACCGAGAGGACCTTAATTTGCCTCTTGATTG
CCCTTTGCTGATGTCATAATGCGATCTTAAGCTCACAGAATTTTCAAACG
CGTCGACGATGATCAGCCGCCCAGTGCCATCCGGGGGCATTCTTTCCAGG
TCCCGTAAAACCTCTCGTGTTCACTTACACTCCGTGTACGGGTGACACTC
GTTGCTGGGATGACAGTCGCGATGAAAAACTATTACCACGTACTGTACTG
TTACAACCACGCAGTGTACCTTACATCGAAATAAACATAACATGGGTGGA
AAACAGAACGGACACAAAATGATACCAAATTGTCCGCGGCAAGCGATATA
TTAGTAATGAAGTCGGAAATACTGAACCGATTAAGCTCACAAATGCTCAA
AAGAAGGCGTTCTTACATGAAAAACATGAAAATATTTTGGTTTTGCGCAA
AACACAACTAAAGATGTTGAAAGTTTAAAAAAAGTCGCTTCGGAAAGAAA
AAACGTACGACGTACTGTTTAAAGAAAAATGCGAATGCGCCTAGACCTTC
ATCATTCTGATCCGCCCCCGGTAGGGGGGAAAAAAATCAAAACGTTTAGG
TGGGCTCAAAGGCTGCAGATACAAAACCTCTTCATGGCATTTAAACGGGT
TCCCCGATGCATATAACATTGGGTCAACAGTATAATGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig90:372285..377423+

>mRNA_F-serratus_M_contig90.20397.1 ID=mRNA_F-serratus_M_contig90.20397.1|Name=mRNA_F-serratus_M_contig90.20397.1|organism=Fucus serratus male|type=CDS|length=1308bp|location=Sequence derived from alignment at F-serratus_M_contig90:372285..377423+ (Fucus serratus male)
ATGCCGGGCAAGACCCTCGTTACGCGCACCAAGGGAACGAATGCCGGGCA
AGACCCTCGTTACGCGCACCAAGGGAACGAAGATCGCCTCCGAGGGGCTG
AAGGGGCGCGTGTTCGAGTTCTCTCTGGGCGACCTCAACAACGACGAGGA
CCTGAGATCGCCTCCGAGGGGCTGAAGGGGCGCGTGTTCGAGTTCTCTCT
GGGCGACCTCAACAACGACGAGGACCTGGGGTACCGGAAGATTAAGCTTT
GTTGCGAGGATGTCCAGGGCACCTCGTGCTTGACCAACTTCCATGGCATG
GACCTTACGCGCGACAAGCTCTGCTCGCTAATCAAGAAGTGGCAGACGCT
TATCGAGGCGCAGGTTGACGTCCGCACAACCGATGGATACCTTCTCCGGA
TCGGGTACCGGAAGATTAAGCTTTGTTGCGAGGATGTCCAGGGCACCTCG
TGCTTGACCAACTTCCATGGCATGGACCTTACGCGCGACAAGCTCTGCTC
GCTAATCAAGAAGTGGCAGACGCTTATCGAGGCGCAGGTTGACGTCCGCA
CAACCGATGGATACCTTCTCCGGATCGCGTGCATCGGCTTCACAAAGAAG
CAGGACAACCAGATCAAGCAGACATGCTACGCGCAGGCGTCGCAGATCCG
AGCGGTTCGCAAGAAGATGTGCGACATCATGACGGAGGAAGCGTCCAAGT
GTGACCTCAGGGAGCTCGTCCTGAAGTTGCGTGCATCGGCTTCACAAAGA
AGCAGGACAACCAGATCAAGCAGACATGCTACGCGCAGGCGTCGCAGATC
CGAGCGGTTCGCAAGAAGATGTGCGACATCATGACGGAGGAAGCGTCCAA
GTGTGACCTCAGGGAGCTCGTCCTGAAGTTCATCCCCGAAAACATCTCTG
GAGAAATCCTGAAGGCTGTGCAAAGCATTTTCCCAATGCAGAACGTCTAC
ATCCGCAAAGTCAAGGCGCTCAAGAAGCCCAAGTTCGACTCATCCCCGAA
AACATCTCTGGAGAAATCCTGAAGGCTGTGCAAAGCATTTTCCCAATGCA
GAACGTCTACATCCGCAAAGTCAAGGCGCTCAAGAAGCCCAAGTTCGACT
TGGTTAAGCTTATGGAGATGCACGGCGATAACACTACCGAAGACGTCGGG
GTGGAGATGGAGAGAGAAGACGAGGGCGAGGAAGTGGAGATAGAGGAAGA
GTGATGGTTAAGCTTATGGAGATGCACGGCGATAACACTACCGAAGACGT
CGGGGTGGAGATGGAGAGAGAAGACGAGGGCGAGGAAGTGGAGATAGAGG
AAGAGTGA
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