mRNA_F-serratus_M_contig90.20386.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig90.20386.1
Unique NamemRNA_F-serratus_M_contig90.20386.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: A0A6H5KUC8_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC8_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 7.420e-72
Identity = 116/143 (81.12%), Postives = 126/143 (88.11%), Query Frame = 3 
Query:   21 RLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRKPSYSGVATFIRSESGLRTIASTNSLADAAFFGSPGSFA--RGLSPDRLTAIDSEGRVLVTDHGHFVLFNVYAPCIR 443
            R+LTWNINGLRKVAA +G +K LLDQF AD+VCFQEIKITRAGLVEH LARAQGYH  F HCK+PRK SYSGVATF+RSESGL+T+AST S  D+AFFGSPGSF   R LSPDRL A+DSEGRVLVTDHGHFVLFNVYAPCIR
Sbjct:   25 RILTWNINGLRKVAASHGGVKQLLDQFNADIVCFQEIKITRAGLVEHELARAQGYHGFFHHCKLPRKVSYSGVATFVRSESGLKTVASTTSFGDSAFFGSPGSFVGERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAPCIR 167
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: D7FKG3_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG3_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 4.800e-71
Identity = 114/142 (80.28%), Postives = 127/142 (89.44%), Query Frame = 3 
Query:   21 RLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRKPSYSGVATFIRSESGLRTIASTNSLADAAFFGSPGSFA--RGLSPDRLTAIDSEGRVLVTDHGHFVLFNVYAPCI 440
            R+LTWNINGLRKVAA +G ++ LLDQF AD+VCFQEIKITRAGLVEH LARAQGYH  F+HCK+PRK SYSGVATF+RSESGL+T+AST SL D+AFFGSPGSF   R LSPDRL A+DSEGRVLVTDHGHFVLFNVYAPC+
Sbjct:   25 RILTWNINGLRKVAASHGGVQQLLDQFNADIVCFQEIKITRAGLVEHELARAQGYHGFFNHCKLPRKVSYSGVATFVRSESGLKTLASTTSLGDSAFFGSPGSFVGERRLSPDRLAALDSEGRVLVTDHGHFVLFNVYAPCV 166
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: A0A2P2J875_RHIMU (Uncharacterized protein MANES_01G146000 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J875_RHIMU)

HSP 1 Score: 110 bits (275), Expect = 1.800e-26
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCK--VPRKPSYSGVATFIRSESGLRTIASTNSLADAAFF--------------GSPGSFARGLSP---DRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            ++++T+N+NGLR+  + +GSL  LLD F+AD++CFQEIK+ R  L   +LA A GY   FS  +  V  +  YSGVATF R +S   +      +A    F              G     ARGL     D L  +DSEGR L+TDHGHFV+FNVY P
Sbjct:    1 MKIVTYNVNGLRQRISQFGSLLKLLDSFDADIICFQEIKLRRQELTA-DLAMADGYESFFSCTRTTVKGRTGYSGVATFCRVKSAFSSTELALPVAAEEGFTGLVNNNNNSKKEKGKVAEIARGLEEFERDELIKVDSEGRCLITDHGHFVIFNVYGP 157
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: A0A067FYM9_CITSI (DNA-(apurinic or apyrimidinic site) endonuclease (Fragment) n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FYM9_CITSI)

HSP 1 Score: 109 bits (273), Expect = 2.650e-26
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRK--PSYSGVATFIRSESGLR-TIASTNSLADAAFFG----SPGSFARGL---SPDRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            ++++T+N+NGLR+  + +GSL+ LLD F+AD++CFQE K+ R  L + +L  A GY   FS  +   K    YSGVATF R +S    T  +    A+  F G    S      GL   S D L  IDSEGR ++TDHGHF+LFNVY P
Sbjct:    1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQEL-KSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP 148
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: A0A2P2J895_RHIMU (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J895_RHIMU)

HSP 1 Score: 110 bits (275), Expect = 2.500e-25
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCK--VPRKPSYSGVATFIRSESGLRTIASTNSLADAAFF--------------GSPGSFARGLSP---DRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            ++++T+N+NGLR+  + +GSL  LLD F+AD++CFQEIK+ R  L   +LA A GY   FS  +  V  +  YSGVATF R +S   +      +A    F              G     ARGL     D L  +DSEGR L+TDHGHFV+FNVY P
Sbjct:    1 MKIVTYNVNGLRQRISQFGSLLKLLDSFDADIICFQEIKLRRQELTA-DLAMADGYESFFSCTRTTVKGRTGYSGVATFCRVKSAFSSTELALPVAAEEGFTGLVNNNNNSKKEKGKVAEIARGLEEFERDELIKVDSEGRCLITDHGHFVIFNVYGP 157
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: V4RVB8_CITCL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Citrus clementina TaxID=85681 RepID=V4RVB8_CITCL)

HSP 1 Score: 109 bits (273), Expect = 2.730e-25
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRK--PSYSGVATFIRSESGLR-TIASTNSLADAAFFG----SPGSFARGL---SPDRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            ++++T+N+NGLR+  + +GSL+ LLD F+AD++CFQE K+ R  L + +L  A GY   FS  +   K    YSGVATF R +S    T  +    A+  F G    S      GL   S D L  IDSEGR ++TDHGHF+LFNVY P
Sbjct:    1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQEL-KSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP 148
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: UPI000C1D1EFC (DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 n=3 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D1EFC)

HSP 1 Score: 110 bits (274), Expect = 3.340e-25
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRK--PSYSGVATFIRSESGLRTIASTNSL-ADAAFFGSPGSFA--------------RGLSPDRLTAIDSEGRVLVTDHGHFVLFNVYAPCIRC 446
            ++++T+N+NGLR   + +GSL  LLD  +AD++CFQE K++R  L   +LARA+GY   FS  +   K    YSGVATF R +S   +      L A+  F G   +F+               G S D L  +D EGR ++TDHGHFVLFNVY P   C
Sbjct:    1 MKIVTYNVNGLRPRVSQFGSLLKLLDSLDADIICFQETKLSRQEL-RADLARAEGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSKEVALPLSAEEGFTGLLENFSGYASRRDDSVVEGLEGFSVDELLKVDREGRCIITDHGHFVLFNVYGPRAEC 159
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: V4SDT1_CITCL (DNA-(apurinic or apyrimidinic site) endonuclease n=13 Tax=Citrus TaxID=2706 RepID=V4SDT1_CITCL)

HSP 1 Score: 109 bits (273), Expect = 4.730e-25
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRK--PSYSGVATFIRSESGLR-TIASTNSLADAAFFG----SPGSFARGL---SPDRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            ++++T+N+NGLR+  + +GSL+ LLD F+AD++CFQE K+ R  L + +L  A GY   FS  +   K    YSGVATF R +S    T  +    A+  F G    S      GL   S D L  IDSEGR ++TDHGHF+LFNVY P
Sbjct:    1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQEL-KSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP 148
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: A0A0K9RKC0_SPIOL (DNA-(apurinic or apyrimidinic site) endonuclease 2 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RKC0_SPIOL)

HSP 1 Score: 108 bits (271), Expect = 8.060e-25
Identity = 67/160 (41.88%), Postives = 89/160 (55.62%), Query Frame = 3 
Query:   15 VVRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRK--PSYSGVATFIRSES------------------GLRTIASTNSLADAAFFGSPGSFARGLSPDRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            +++++T+N+NG+R+  + YGSL  LLD  +AD++CFQEIK T+  L   +L  AQGY   FS  +   K    YSGVATF R +S                  GL   +S N  +   FF S     +    D L  IDSEGR ++TDHGHFVLFNVY P
Sbjct:    1 MLKIVTYNVNGIRQRISQYGSLLKLLDSLDADIICFQEIKSTKQELTA-DLIMAQGYESFFSCTRTTGKGRTGYSGVATFCRVKSAFSSTEVALPLAAEEGFTGLLDASSGNGFSSDKFF-SDMECLKEFRKDELLKIDSEGRCVITDHGHFVLFNVYGP 158
[Close]
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Match: A0A8K0E6J2_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0E6J2_9ROSA)

HSP 1 Score: 108 bits (271), Expect = 8.650e-25
Identity = 70/155 (45.16%), Postives = 88/155 (56.77%), Query Frame = 3 
Query:   18 VRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLVEHNLARAQGYHCLFSHCKVPRK--PSYSGVATFIRSESGLR-TIASTNSLADAAFFGSPGSF--ARGLSP-----------DRLTAIDSEGRVLVTDHGHFVLFNVYAP 434
            ++++T+N+NGLR   + YGSL  LLD F+AD++CFQE K+ R  L   +L  A GY   FS  +   K    YSGVATF R +S    T  S    A+  F G  G+   ARG +P           D L  ID EGR +VTDHGHFVLFNVY P
Sbjct:    1 MKIVTYNVNGLRPRISQYGSLLKLLDSFDADIICFQETKLRRQELTA-DLVMADGYESFFSCTRTCEKGRSGYSGVATFCRVKSAFSSTEVSLPLAAEQGFTGVLGNSQSARGGTPAIAPSLEEFARDELLKIDGEGRCVVTDHGHFVLFNVYGP 154
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig90.20386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUC8_9PHAE7.420e-7281.12DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
D7FKG3_ECTSI4.800e-7180.28DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A2P2J875_RHIMU1.800e-2642.41Uncharacterized protein MANES_01G146000 n=1 Tax=Rh... [more]
A0A067FYM9_CITSI2.650e-2644.30DNA-(apurinic or apyrimidinic site) endonuclease (... [more]
A0A2P2J895_RHIMU2.500e-2542.41DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
V4RVB8_CITCL2.730e-2544.30DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
UPI000C1D1EFC3.340e-2541.25DNA-(apurinic or apyrimidinic site) lyase 2 isofor... [more]
V4SDT1_CITCL4.730e-2544.30DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A0K9RKC0_SPIOL8.060e-2541.88DNA-(apurinic or apyrimidinic site) endonuclease 2... [more]
A0A8K0E6J2_9ROSA8.650e-2545.16Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig90contigF-serratus_M_contig90:164918..167578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue2.7e-60
Seed eggNOG ortholog2880.D7FKG3
Preferred nameAPEX2
KEGG koko:K02836,ko:K10772
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0001650,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0042221,GO:0042578,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901700,GO:1901701,GO:1902544,GO:1902546
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
EC4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03400
Exons3
Model size449
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig90.20386.1prot_F-serratus_M_contig90.20386.1Fucus serratus malepolypeptideF-serratus_M_contig90 164918..167573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932621.7243705-CDS-F-serratus_M_contig90:164917..1652131622932621.7243705-CDS-F-serratus_M_contig90:164917..165213Fucus serratus maleCDSF-serratus_M_contig90 164918..165213 -
1690964390.1915731-CDS-F-serratus_M_contig90:164917..1652131690964390.1915731-CDS-F-serratus_M_contig90:164917..165213Fucus serratus maleCDSF-serratus_M_contig90 164918..165213 -
1622932621.74196-CDS-F-serratus_M_contig90:165534..1655731622932621.74196-CDS-F-serratus_M_contig90:165534..165573Fucus serratus maleCDSF-serratus_M_contig90 165535..165573 -
1690964390.2057526-CDS-F-serratus_M_contig90:165534..1655731690964390.2057526-CDS-F-serratus_M_contig90:165534..165573Fucus serratus maleCDSF-serratus_M_contig90 165535..165573 -
1622932621.7606463-CDS-F-serratus_M_contig90:167464..1675731622932621.7606463-CDS-F-serratus_M_contig90:167464..167573Fucus serratus maleCDSF-serratus_M_contig90 167465..167573 -
1690964390.225329-CDS-F-serratus_M_contig90:167464..1675731690964390.225329-CDS-F-serratus_M_contig90:167464..167573Fucus serratus maleCDSF-serratus_M_contig90 167465..167573 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932621.7783554-UTR-F-serratus_M_contig90:167573..1675781622932621.7783554-UTR-F-serratus_M_contig90:167573..167578Fucus serratus maleUTRF-serratus_M_contig90 167574..167578 -
1690964390.2434483-UTR-F-serratus_M_contig90:167573..1675781690964390.2434483-UTR-F-serratus_M_contig90:167573..167578Fucus serratus maleUTRF-serratus_M_contig90 167574..167578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig90.20386.1

>prot_F-serratus_M_contig90.20386.1 ID=prot_F-serratus_M_contig90.20386.1|Name=mRNA_F-serratus_M_contig90.20386.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MGSVVRLLTWNINGLRKVAAGYGSLKALLDQFEADVVCFQEIKITRAGLV
EHNLARAQGYHCLFSHCKVPRKPSYSGVATFIRSESGLRTIASTNSLADA
AFFGSPGSFARGLSPDRLTAIDSEGRVLVTDHGHFVLFNVYAPCIRC*
back to top

mRNA from alignment at F-serratus_M_contig90:164918..167578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig90.20386.1 ID=mRNA_F-serratus_M_contig90.20386.1|Name=mRNA_F-serratus_M_contig90.20386.1|organism=Fucus serratus male|type=mRNA|length=2661bp|location=Sequence derived from alignment at F-serratus_M_contig90:164918..167578- (Fucus serratus male)
GGGCGATGGGGAGCGTCGTCCGCCTTTTGACATGGAACATCAACGGCCTC
CGGAAGGTAGCGGCGGGATATGGAAGCCTGAAGGCGCTGCTTGATCAGTT
CGAAGCAGACGTTGGTGAGGGCGGGAGGTGTGTTTTAATCAATCTGCGCG
AAGTAAAAGTCATCTCTGTCCCAGAGAGAGTGCTGCATACGACGGCATAC
AGATGCCCGGTTGGAGAAGGATTCAGCCGTCCCTTTCCCTCGTCGACCAT
GAAGTCGAATTTTGTGTACCTCACCTACGAAATAGTTGTTCTCCACTTGT
TGGGCTTTTTTGTTTTTGTTTTTGTGTGACAAAAAATGCCAGTTAGTGTG
ACTGCACTCGAACTCATGTCCCAACGTCACAAGGTTCCAAGGTTACCAAC
TGAACCACCGGAGCGACCATGTTTGTACGGTCATCACATATCAAGAGACA
GACAGCAGAGAAGGATAAAAAATTGGGAAACAGAACTGTCATCTAACAGA
AGAATGCCAGAACGGGGATAGGCCAGATGCTACCCCTAGGTCGTTACTCA
GGCTGAATATAGTGCTTACTTATGGGATTCCTCCCGAGTTCCCGGCGGCG
TTCATTTTTTTCTTTCAACCGCCATACACCATCGGGTCAGTCACGAGTTT
ATCGATTCACGCAATTGCGTACCGACGGCGTTCATTGTCGAGAGTCCACC
GGCACAGGGCCAGTAAACCTCAAGGTAGATCTAAACGGGTGCTGCCTTGC
AGGTCACCATGGACCAATTAATGCGCGTCTCTCTTTCCCATACTCACTAC
GGGCATGAAGTGGGCGTGTTGAAAGTACCGGCGGAATATGTAGTATCCCA
AATACAGTACAGTACAGTACAGTACAGTACAGTACAGTACCCGTATGGGT
GCGGGAAAAGAGGGGCGCGCATTAATTGTCCATGGCAATACCTGTAAACG
CAGCACCCGTTACCCGAACTACCTTTAGGAATACTGTCTATGCGCCGGCG
GACTCTGGGTAGTAAACGTCATCGGTACGCATTTGCATGACCTGATAAAC
TCGGGACTGGCCCGATGGTGATTGACGGTATACCAGTACAAAATATGGAA
AGCGTAGCGGGAAGAGAGAAGCGCGCGAGTACGCGCCAGATTTAGCCTGT
TTTTTTATTTTTGTTTTTGTATCTCACTTACGCCCGATGAGCCTCAACGT
GTTAGGTTACCGAATCCCACCTACTGCAATGCTGCCATCATCTATCCTGC
CTGTGGTCTCGAAGGATCTTCCCATCTTTCCCCGGTTTTCGCCTTATAAA
TTTCTATCGCGAAGCAAGTTCAGCACTCTTACAACTCGTCAACCAATGGT
TGAATTTTACTTACTCACGTTCTCACGCTTTCCGGTACGGAATCCATAAA
ATAAATTATGGATTTCACAAGAACCGAACTCACGACTTCCGCACTATTAA
TAGCAGGTGTACGTGGTTACCTACTAGACCACTCGGGCGGTGAGGGTAGA
AGTGAATCAGTTGGCTGACGCGGAACGGGACGGCCGAATCTGTCTCGTGA
GACCGAATTCCCAGGCGCGAACAGGGACAAAGAAAAATATATTTTCCCCT
TGTCAGCTCACCACGAGTAGGATTGGCAACACTCCGAGGAATGCCCAGTT
TGCTGCATCTGATAACTATACATACTATTAATACTATGAAGAACAGTAGA
TCGGTACAAAAGTTGGCATGCTTTCCAAAATAATTCTTACTTCAAGTAAC
TTGATATACAGTAAAATAGTACAGTACTGATCTACTGTTTCACCTCGCTT
TTTATCCAACACAGACAATAATAGGTTTCACGTGTAAACACGAGATTGAC
TCGTAGGGAGCTATTATACTAATATTATAGTACTATTGAATGCCACATGT
ATTTCAAAACCCTGACCGAACTTCGTGTTTTGTGCAACCTCTCCGCATAT
GAATGCTCGTAACGCCTTGTGGTTTCGTTCAACTTTTGGAACGGTCAACG
GGCAGTGTGCTTCCAAGAGATCAAAATTACCAGGGCGGGTCTAGGTGAGG
TCAAGGTGAGGTGGTCTACTTTGCCCACCTCCGTCCCCGCACTACTGTAC
CAAGCTCTCTGATGTTGGCGGTTGACTCTCGCGCGTAGCTCAAGCCCCGC
GAGAACATTTGCTTCTCCATGGTCACTGTTGTGGACTATTGGCCTAACCC
ATCGCAGCATACGAGCAGGTGTCTGTGAACAACCCCCCTTCCAGCATTTC
CTTTGTCCTCTGTCTTTAGTCATCTGTGTAATACAATGTTGATTGCCTCT
TCGCCCTTTTCGATCGGTTTCGTGCGTATTGTGAATTACTGGAACTACAC
TACCGCTACATGCAGTGGAGCACAACCTTGCGCGTGCTCAGGGATACCAT
TGCCTCTTCAGCCACTGCAAGGTACCCCGAAAGCCTTCTTATTCCGGCGT
GGCAACCTTCATCCGATCTGAGTCGGGCTTGAGAACCATAGCTTCCACGA
ACTCCCTGGCGGACGCAGCCTTTTTCGGCTCTCCTGGGAGCTTCGCGCGG
GGACTGAGCCCTGACAGACTAACGGCGATCGATTCGGAAGGCAGGGTGCT
CGTTACGGATCACGGGCACTTCGTCCTCTTCAACGTGTACGCTCCTTGCA
TCAGGTGTTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig90:164918..167578-

>mRNA_F-serratus_M_contig90.20386.1 ID=mRNA_F-serratus_M_contig90.20386.1|Name=mRNA_F-serratus_M_contig90.20386.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig90:164918..167578- (Fucus serratus male)
ATGGGGAGCGTCGTCCGCCTTTTGACATGGAACATCAACGGCCTCCGGAA
GGTAGCGGCGGGATATGGAAGCCTGAAGGCGCTGCTTGATCAGTTCGAAG
CAGACGTTGATGGGGAGCGTCGTCCGCCTTTTGACATGGAACATCAACGG
CCTCCGGAAGGTAGCGGCGGGATATGGAAGCCTGAAGGCGCTGCTTGATC
AGTTCGAAGCAGACGTTGTGTGCTTCCAAGAGATCAAAATTACCAGGGCG
GGTCTAGTGTGCTTCCAAGAGATCAAAATTACCAGGGCGGGTCTAGTGGA
GCACAACCTTGCGCGTGCTCAGGGATACCATTGCCTCTTCAGCCACTGCA
AGGTACCCCGAAAGCCTTCTTATTCCGGCGTGGCAACCTTCATCCGATCT
GAGTCGGGCTTGAGAACCATAGCTTCCACGAACTCCCTGGCGGACGCAGC
CTTTTTCGGCTCTCCTGGGAGCTTCGCGCGGGGACTGAGCCCTGACAGAC
TAACGGCGATCGATTCGGAAGGCAGGGTGCTCGTTACGGATCACGGGCAC
TTCGTCCTCTTCAACGTGTACGCTCCTTGCATCAGGTGTTGATGGAGCAC
AACCTTGCGCGTGCTCAGGGATACCATTGCCTCTTCAGCCACTGCAAGGT
ACCCCGAAAGCCTTCTTATTCCGGCGTGGCAACCTTCATCCGATCTGAGT
CGGGCTTGAGAACCATAGCTTCCACGAACTCCCTGGCGGACGCAGCCTTT
TTCGGCTCTCCTGGGAGCTTCGCGCGGGGACTGAGCCCTGACAGACTAAC
GGCGATCGATTCGGAAGGCAGGGTGCTCGTTACGGATCACGGGCACTTCG
TCCTCTTCAACGTGTACGCTCCTTGCATCAGGTGTTGA
back to top