mRNA_F-serratus_M_contig9.20381.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20381.1
Unique NamemRNA_F-serratus_M_contig9.20381.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.230e-38
Identity = 137/394 (34.77%), Postives = 173/394 (43.91%), Query Frame = 2 
Query:  230 VAITAQIYLFAVVVAVYPDSNQDGVTQINREAFASFPFDSTTRLVRRTSSAMRPAVGWKVVPCRASHA------PSASATDTPEMTPLPDISSVAALSDCQGGGFRVENVQETRQAGSEEGGGNLVGAFADLNGTARSSSSTSTASRISRKAPAET-RVCERIDALGTVEGSEGGGDEVGSRAVAAAGESEGADSPRNVQCHR---------PIYYRNSPPMHPARHTPQHILQ----------------ELGGEGGGHD----CARS-----------FAREPWQTSSGRDSDEGTDPETVEFRPNPDTSRGASSQGEAIEDDIRGAIRDRSMVRVSELPDVCAICLGKYSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNLNILPPE 1270
            VA+ +Q YL A+ V++ PD    GVTQINREAFASFPFD+T  LVRR  S  RP VGW+V   +   A      P A  T TP            A +DCQ G       Q     G   G   +V A A   G+  +    + A  +      +T  +      +G V G  G     G+  +A++     A +    QC           P+         P    P H  +                ELG   G HD    C R             ++E    SS   S +   P       N DT+             +R    D ++VRVSELPDVCAICLG+Y+ GE VHVLPCLHIFHAECLDVWI  HPSCPYCK +LN++P E
Sbjct:    2 VAVVSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRD--------AAADCQAGALVAGQAQRRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLV-GRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHCXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTA-------------VRLRANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQE 373
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.220e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 2 
Query: 1079 DRSMVRVSELPDVCAICLGKYSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNLNILPPE 1270
            D ++VRVSELPDVCAICLG+Y+ GE VHVLPCLHIFHAECLDVWI  HPSCPYCK +LN++P E
Sbjct:  404 DETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIPQE 467
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: R0GM05_9BRAS (RING-type domain-containing protein n=1 Tax=Capsella rubella TaxID=81985 RepID=R0GM05_9BRAS)

HSP 1 Score: 73.6 bits (179), Expect = 2.250e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 2 
Query: 1118 CAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNLNILPP 1267
            CAICLG+++ GERV VLP C H FH  C+D W++SH SCPYC+ +L  +PP
Sbjct:  107 CAICLGEFADGERVRVLPPCNHSFHVSCIDTWLLSHSSCPYCRHSL--IPP 155
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A175YIW7_DAUCS (RING-type domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YIW7_DAUCS)

HSP 1 Score: 73.6 bits (179), Expect = 4.230e-11
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 2 
Query: 1118 CAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNLNILPPECEVNERRDNARRYALHFVSIA 1333
            C ICLG++  GE+V VLP CLH FH +C+D W+VSH SCP C++ L  +P     ++ R  +   + H +S+A
Sbjct:  109 CPICLGEFLDGEKVRVLPDCLHNFHVKCIDKWLVSHSSCPNCRNLLIDIPNSGVADQNRSFSDNNSGHRISVA 181
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A3B5ZXE1_WHEAT (RING-type domain-containing protein n=9 Tax=Triticeae TaxID=147389 RepID=A0A3B5ZXE1_WHEAT)

HSP 1 Score: 73.6 bits (179), Expect = 5.480e-11
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 2 
Query: 1016 TSRGASSQGEAIEDDIRGAIRDRSMVRVSELPDVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCK 1243
            T+RGAS  G  I+  +  ++          + DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+
Sbjct:   89 TARGASRGGSGIKRRVLRSLPVEVYGSGEVIDDVCAICLGEFVDGEKVRVLPRCAHGFHVRCVDAWLVSHGSCPTCR 165
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A453FU13_AEGTS (RING-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FU13_AEGTS)

HSP 1 Score: 72.8 bits (177), Expect = 6.680e-11
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 2 
Query: 1112 DVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNL 1252
            DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+D++
Sbjct:   99 DVCAICLGEFEDGEKVRVLPRCGHEFHVRCVDTWLVSHDSCPTCRDSV 146
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 8.510e-11
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 2 
Query: 1118 CAICLGKYSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNL 1252
            C ICL +Y+AGE + VLPCLH FHAEC+D W+  +PSCP C+ ++
Sbjct:   47 CRICLCEYTAGEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A3B6FRK9_WHEAT (RING-type domain-containing protein n=6 Tax=Triticum TaxID=4564 RepID=A0A3B6FRK9_WHEAT)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 2 
Query: 1112 DVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNL 1252
            DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+D++
Sbjct:  128 DVCAICLGEFEDGEKVRVLPRCGHEFHVRCVDTWLVSHDSCPTCRDSV 175
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: F2DIX4_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DIX4_HORVV)

HSP 1 Score: 72.4 bits (176), Expect = 1.400e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 2 
Query: 1112 DVCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNL 1252
            DVCAICLG++  GE+V VLP C H FH  C+D W+VSH SCP C+D++
Sbjct:  120 DVCAICLGEFEDGEKVRVLPRCGHEFHVRCVDTWLVSHGSCPTCRDSV 167
[Close]
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU)

HSP 1 Score: 70.1 bits (170), Expect = 1.580e-10
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2 
Query: 1097 VSELPD-VCAICLGKYSAGERVHVLP-CLHIFHAECLDVWIVSHPSCPYCKDNLNILPPECEV 1279
            V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+ SH +CP C+ ++   PP   V
Sbjct:   51 VEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIE--PPPQHV 111
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX1_ECTSI4.230e-3834.77RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JT04_9PHAE5.220e-2578.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
R0GM05_9BRAS2.250e-1158.82RING-type domain-containing protein n=1 Tax=Capsel... [more]
A0A175YIW7_DAUCS4.230e-1143.84RING-type domain-containing protein n=1 Tax=Daucus... [more]
A0A3B5ZXE1_WHEAT5.480e-1145.45RING-type domain-containing protein n=9 Tax=Tritic... [more]
A0A453FU13_AEGTS6.680e-1160.42RING-type domain-containing protein n=1 Tax=Aegilo... [more]
A0A8C3ZMD8_9TELE8.510e-1157.78RING-type domain-containing protein n=1 Tax=Dentic... [more]
A0A3B6FRK9_WHEAT1.240e-1060.42RING-type domain-containing protein n=6 Tax=Tritic... [more]
F2DIX4_HORVV1.400e-1060.42Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
A0A4Y1RQH7_PRUDU1.580e-1046.03RING-type E3 ubiquitin transferase n=1 Tax=Prunus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:1394837..1400719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue7.4e-40
Seed eggNOG ortholog2880.D8LAX1
KEGG koko:K16271
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons6
Model size3380
Cds size1365
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20381.1prot_F-serratus_M_contig9.20381.1Fucus serratus malepolypeptideF-serratus_M_contig9 1396780..1400631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932620.7696114-UTR-F-serratus_M_contig9:1394836..13953241622932620.7696114-UTR-F-serratus_M_contig9:1394836..1395324Fucus serratus maleUTRF-serratus_M_contig9 1394837..1395324 -
1690964389.6939194-UTR-F-serratus_M_contig9:1394836..13953241690964389.6939194-UTR-F-serratus_M_contig9:1394836..1395324Fucus serratus maleUTRF-serratus_M_contig9 1394837..1395324 -
1622932620.7859821-UTR-F-serratus_M_contig9:1395340..13967791622932620.7859821-UTR-F-serratus_M_contig9:1395340..1396779Fucus serratus maleUTRF-serratus_M_contig9 1395341..1396779 -
1690964389.723016-UTR-F-serratus_M_contig9:1395340..13967791690964389.723016-UTR-F-serratus_M_contig9:1395340..1396779Fucus serratus maleUTRF-serratus_M_contig9 1395341..1396779 -
1622932620.8866174-UTR-F-serratus_M_contig9:1400631..14007191622932620.8866174-UTR-F-serratus_M_contig9:1400631..1400719Fucus serratus maleUTRF-serratus_M_contig9 1400632..1400719 -
1690964389.7988245-UTR-F-serratus_M_contig9:1400631..14007191690964389.7988245-UTR-F-serratus_M_contig9:1400631..1400719Fucus serratus maleUTRF-serratus_M_contig9 1400632..1400719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932620.8037927-CDS-F-serratus_M_contig9:1396779..13970371622932620.8037927-CDS-F-serratus_M_contig9:1396779..1397037Fucus serratus maleCDSF-serratus_M_contig9 1396780..1397037 -
1690964389.7352288-CDS-F-serratus_M_contig9:1396779..13970371690964389.7352288-CDS-F-serratus_M_contig9:1396779..1397037Fucus serratus maleCDSF-serratus_M_contig9 1396780..1397037 -
1622932620.8176317-CDS-F-serratus_M_contig9:1397249..13981221622932620.8176317-CDS-F-serratus_M_contig9:1397249..1398122Fucus serratus maleCDSF-serratus_M_contig9 1397250..1398122 -
1690964389.7475188-CDS-F-serratus_M_contig9:1397249..13981221690964389.7475188-CDS-F-serratus_M_contig9:1397249..1398122Fucus serratus maleCDSF-serratus_M_contig9 1397250..1398122 -
1622932620.8306658-CDS-F-serratus_M_contig9:1398926..13989651622932620.8306658-CDS-F-serratus_M_contig9:1398926..1398965Fucus serratus maleCDSF-serratus_M_contig9 1398927..1398965 -
1690964389.7622285-CDS-F-serratus_M_contig9:1398926..13989651690964389.7622285-CDS-F-serratus_M_contig9:1398926..1398965Fucus serratus maleCDSF-serratus_M_contig9 1398927..1398965 -
1622932620.843447-CDS-F-serratus_M_contig9:1399398..13995721622932620.843447-CDS-F-serratus_M_contig9:1399398..1399572Fucus serratus maleCDSF-serratus_M_contig9 1399399..1399572 -
1690964389.7759407-CDS-F-serratus_M_contig9:1399398..13995721690964389.7759407-CDS-F-serratus_M_contig9:1399398..1399572Fucus serratus maleCDSF-serratus_M_contig9 1399399..1399572 -
1622932620.8736844-CDS-F-serratus_M_contig9:1400610..14006311622932620.8736844-CDS-F-serratus_M_contig9:1400610..1400631Fucus serratus maleCDSF-serratus_M_contig9 1400611..1400631 -
1690964389.786886-CDS-F-serratus_M_contig9:1400610..14006311690964389.786886-CDS-F-serratus_M_contig9:1400610..1400631Fucus serratus maleCDSF-serratus_M_contig9 1400611..1400631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20381.1

>prot_F-serratus_M_contig9.20381.1 ID=prot_F-serratus_M_contig9.20381.1|Name=mRNA_F-serratus_M_contig9.20381.1|organism=Fucus serratus male|type=polypeptide|length=455bp
MNWTIFVLVGSGLLFTAGLAWFFTEAWVFAVRTHTIWLIILLTITSTVAI
TAQIYLFAVVVAVYPDSNQDGVTQINREAFASFPFDSTTRLVRRTSSAMR
PAVGWKVVPCRASHAPSASATDTPEMTPLPDISSVAALSDCQGGGFRVEN
VQETRQAGSEEGGGNLVGAFADLNGTARSSSSTSTASRISRKAPAETRVC
ERIDALGTVEGSEGGGDEVGSRAVAAAGESEGADSPRNVQCHRPIYYRNS
PPMHPARHTPQHILQELGGEGGGHDCARSFAREPWQTSSGRDSDEGTDPE
TVEFRPNPDTSRGASSQGEAIEDDIRGAIRDRSMVRVSELPDVCAICLGK
YSAGERVHVLPCLHIFHAECLDVWIVSHPSCPYCKDNLNILPPECEVNER
RDNARRYALHFVSIAEWPLEWFREHLVQGRERMRADVGAAPTAGGVVADA
TLGL*
back to top

mRNA from alignment at F-serratus_M_contig9:1394837..1400719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20381.1 ID=mRNA_F-serratus_M_contig9.20381.1|Name=mRNA_F-serratus_M_contig9.20381.1|organism=Fucus serratus male|type=mRNA|length=5883bp|location=Sequence derived from alignment at F-serratus_M_contig9:1394837..1400719- (Fucus serratus male)
CGCAGCCCCAGGTATCTCCATCACCGATCAAGTACGGCTTCTAAAGTAAA
CTGGCACTTTTTCTTGAAACCAGACGTGGATCGAAGGCATGAACTGGACT
ATTTTCGTGGTGAGACTCCAAAGTTTTGATTGATCAGGCACGATGTCCTA
TACTCAACCTACCGCAGTTGCTACAGAGTACTGCAGCAAACCTCACGGAC
AGCGATGTACCTACACCTTCCGAGACAACCACCACGATGACAACTCTACG
CCCTTTGCTGCAACAGTACAGTAGCTAATACTGTTCTTGAGCACTTTGAC
GGATCGCGGTCTTGATACAGACCCTGAAGCGCAGGCAAATCTGGGAGCTG
TTCGTGATCTCTCCTCTTTTGTTTGGCCCCGAAGTTCTCCACGCCTGTGC
AAGTATCCATTTTTAAAGAAAAACCAGAACGCGTCTATACCTTCTGAGCA
TCCTCCAGATCCATTGTTGCAGTAGGTTCAAGTACAGTGATACGTACAAT
ACTCAAAAGCAACATCAGCGCGTATAGCTCGAATTTTCGCCCACCTACAA
AGAAGGGCTCTACAGAGTACCGGTACAGTATACGGAAATACCCTACAATG
CACCTTATGCCCACTGTCCTGGCAGCACTACTATAAAACCACATCACCAT
ACCGTGGTCGTCAAGGCGTGAATACTGAGAGTTTTACGGTATACCGTCGG
GGGCGCAGCCTGAAATCCACACCGCATGAAGATACTGCCCGTGTATCAAA
CTACGTTCCTGCCACAAAACCTGGTACAAATACGAGATACACAGTGTGAC
TTTTTCCTTCTATCCATCTTGTTAGCCTGCTGATTTTTTCTGGCGACCAA
CTACTAACCGCTGTAGGTAAGCCGTTCTCGAGCACTTGTAATGCTATGGC
TAGCTACGGTACGCCTATTATCGGATTTTCGCGTCCATGCCGCACCCACG
CCCTAGTGATTGGGACAGGTGTCTTCCCTTGATGGGGTCTTGAACTGTAT
TTTTACTTGGCGGCGTGTCTCGCATAAACCTTGCTGTAAAACATTATTTA
TATTTGTTTTACTCGGCGTTACCGGTGATGGAGAACGTCACGATCCACCG
CGCATCGCGGAACAACGCCCTACCGTCGTCTGTGCGCCCTTCTACAGCTG
GTGGGGAGCGGACTCTTGTTCACGGCGGGTCTAGCCTGGTTCTTCACCGA
AGCCTGGGTTTTTGCCGTCCGCACCCACACGATCTGGCTCATAATCCTTC
TCACCATCACCTCCACGGTCGCGATCACCGCCCAGATCTACCTGTTCGCC
GTTGTCGTGGCCGTCTACCCTGTGAGTCGTGCGCTACTTCAAGCATTTAG
TGTAGGTTCTTCGCGGGGATCTGGCGTTTTCGGAGGGAAAGATCGCGAAC
GAGTTGGCCACGAGCCCTATGAGAGAGGTCGCTAACACCAACGAAACAAC
ACATGGGCCGTGGGAAATTATTTCTGGCGCAGAGAGCCCCCTCGATTCCC
TCGACGAAAGCCGTTTAAGACTCTATTACTGGCAGCCACATCGCGGTGTA
GAGTGGTAGGTGCTGCGAGCGTCGATACTGCATCTGGATACCACAGTAAA
ACCGCCCTATTGCATAAGTGCCAGAGCGCAGAATGGGGTCAAAGCACGCG
CGGGCCTCATCTAACGAGATTATTTCTCCCTCCTCCAACTACCCCAACCT
ATTTAATCTCAATCCAACTAGCTCTGTACCTCCTTTGCTTCCGCCGTTGT
TCAGGACTCAAATCAAGACGGAGTGACTCAAATCAACCGCGAGGTGAGGA
AATTCTGCCACGTGAATGCTATCCTTTTCAGGCCCATGCTTTGCCTCGTT
GACAAACGGCAGGAGCGTTTTGAGACGCTGACGAGTTGGGGTCTGACCGG
TGCCGGTACCCTGCTATTGACTTTTGGGCGACGTTGTCGCATCTATCTCT
GGCTATTTTGGCCAAGCCTGAGATGTTCCACCTGAGCACATTGCATTCAG
CTGATGAGAGGACATTATAGGTCGTACCTCCGATCGTTCTCCCCGCATGC
AAACCGCATAGTAGGTCGATTCAGAATGCGATATGCTATATTGGGTTCGT
ATACCTCTATCTGTACACCCCCCACCTTGCCATCGCCCCCCCCCCCCCCC
CCCCATCCCGCCGCCCTCTTGTCCCAAACTGCAGCCTGCCCGCCTTCGCT
TTGTTGGAAGACGAAAAATATAGATACATATATGCCGATGACGTTGGGTT
ACTGAATCAAATTGGAATATTGAGAGGAACTGTCGACAGCTGGGAGTAAC
CGCATTGGCTATCCGTACTAAGTTTCAGTGCAGTGATTTATGGTATCATA
GATCCTTACGATATCTACCTCAAACGTTTACTCCCCAATTCTATAAAAAC
AACCCAACGATAACCTTGATAACCCTTTCTTTCCCGCGGTTCGCGAGTTA
AGGTCCGTAGGGTTCCTGTTTAACTTCAATAATACCTACCTCCAGTCAAC
AAGTTGAAAATTTAATGCTGAACAGTATTGATGTTTTCGTTTATGGTGGC
ATCAATACACTTCTTCGCCCACCCGCCGTTGGCGTTGACCGCAGCAGGCG
TTCGCGTCTTTCCCGTTCGATTCCACCACTCGGCTAGTCCGACGCACGAG
CTCGGCCATGCGGCCAGCCGTCGGCTGGAAAGTCGTACCGTGCCGTGCGT
CTCACGCGCCCTCTGCTAGCGCCACGGATACTCCCGAAATGACGCCCCTT
CCTGACATTTCCTCCGTAGCAGCGCTGTCCGATTGCCAAGGAGGGGGTTT
CCGAGTGGAGAACGTCCAGGAGACACGCCAAGCAGGAAGCGAGGAGGGTG
GAGGAAATCTCGTGGGTGCGTTCGCGGATCTTAACGGCACCGCGAGGTCT
TCATCCTCCACCTCCACCGCTTCCCGCATTTCGAGGAAAGCGCCGGCAGA
AACCCGTGTGTGCGAGCGGATTGATGCGCTGGGAACAGTCGAAGGCAGTG
AAGGTGGTGGCGATGAGGTGGGTTCCAGGGCGGTGGCCGCGGCGGGAGAG
TCTGAAGGCGCTGACTCCCCAAGGAATGTGCAGTGTCACAGGCCCATTTA
CTATCGGAACAGTCCACCGATGCATCCTGCACGTCACACTCCGCAACATA
TTCTCCAAGAACTCGGAGGCGAGGGAGGAGGCCACGACTGCGCGAGAAGC
TTTGCGCGAGAGCCCTGGCAAACATCAAGCGGGCGCGATTCAGACGAGGG
CACCGACCCTGAAACCGTTGAATTCCGACCTAACCCAGACACCTCCCGAG
GGGCATCATCGCAGGGCGAAGCGATCGAGGATGATATCCGGGGCGCGATT
CGTGACAGGTCAATGGTGCGCGTCAGCGAGCTTCCAGACGTGTGCGCAAT
ATGTTTGGGGAAGTACTCCGCTGGAGAGAGAGTGCACGTTTTGCCCTGTC
TGCACATCTTCCACGCCGAGGTGATAACAAACAGGAGAAGCGCGATTTTG
GCACAGAGTTCTACTTCTCGAGAGCTTTCCTTCAATCAATGTCTACTGAT
CCCGGCACGAGGGCATTCCACGCATTTTCTTACATCAGAACGCGCAACCC
CCCCCGCTCCCTCCCTCCCCCCTCCCCCCTCCAATGCGATTCTGCGGCAT
TTTGTATTCTCGCTTCGAACGGCACTTGGCAGTGTCTGGACGTCTGGATC
GTCTCGCATCCGTCCTGCCCTTACTGCAAAGATAATCTCAATATTTTGCC
GCCGGAGTGCGAGGTCAACGAGAGGCGGGACAACGCCCGGCGCTACGCGC
TCCACTTCGTTTCTATTGCCGAGTGGCCCCTCGAGTGGTTTCGTGAGCAC
CTGGTGCAAGGGCGTGAGCGAATGAGGGCAGATGTTGGGGCGGCCCCGAC
TGCGGGAGGGGTGGTCGCAGATGCCACACTTGGCTTATGATGTCAACACG
CCCCCTTCCTCCCTTTCCCACGAGTAAAGGCTTTGCTAGAAATAGTCCTG
AAAAGCATGCGTGAGGGTTTCTTTAGGTTTTTTATTTTATCGTTTACTAG
AAACAGACTTGAGTATCATACTTTATTGGGCACGCGGTGTTTTTAGTGAT
AAACGTTTTTATCTTTATTTATTTTTCGTATTTATGGGCAATCTCTCTGA
GGCACCTAGCCGGGAGAGGTCTTTGAAGCTGGACCAGAGACATATACCGT
CAGCGAGACGTCTCCGATTATGTCAAAATCGGTTGCCCTCCCAGCTCTTC
CTGTACCGACAGGTTGCACACATCAAACAGCCACGTCGGCTGCGCCTCTT
GAGGTACTGCAAAGGGCGGGTTTTGCATGTACGCATTCAGACGTGACCAC
GACGGTGGTCTCGACTTCGTGAGAGAAGAGGGCAAAACGCCGTAAGAGGA
GGAAGCAACCCCTTTAGCGCCCGTTGACATTTCGAGAAGCAAGATTTAGA
TGAGAGGAGGTCAGACGAGATGTTATAACACCTACTGCCGCCGCGGAAGT
GTGCGCAACAACCGTTTTCATGCTTTCCTAAGCAACTCATTATTTGTCTC
AACAGGGAGGGAGAAAGGGGCGAGGGGGCGAGTAATGTTCCTGATAATAA
TGGGAGGCAACCTTGCAACCAACCAGTAAGAGATGTGCGCTATGTTTGCC
GACGTGAAACATGGAAGGGTGCGCCCTAACATTAGGCAGAGGAACTTCCG
CGAGCACAAGTTCGACGCATTTCGACATATACCTCCTTGAGCTCTTGCAG
GACAGATTCATTTGACATACGTTGCCGTGGCAGTAGCTTCGAAATTTGGT
TCACTCGACCAAGGCCATCCGAGACCAAGGCCACCCGAGGCTCGCCGCTT
ATGGTGAATGCGATTTGCGCGCGCGTGTGTGCGTACTACGTGTATTGGAG
GGCTATTATTCAGTTAATCCAGTACCTCCTGAAGGCGGCTGTATGCGCTA
TATAACATATAATAGCAAATCTATATTTCAAGGAGAGGATAGCCCAAAGC
AAGCGTAGTTGTCCTGGTTCGCTCGCCATAGCTGATTGGCCGCAAGTCGT
TCGAATTTGTATGGAAAGTTTTTGTTTCTCGATGTCATATTGCCTTTGTC
TGGCGTTCGGTATACGTTGTTTCTTTGTTTTATTTTGTTTCATTTTCGTC
TTTTTGCTTTTTATTTATTTGTTGAACCCGCGACCCTCCTTTGTTCAATT
ATTTGTCGGTGTACACGCGCCCCGACAGCCACACGCAGTTACCTAACAAC
TGCCTGTGCCCTCTTTGTTTAGTTAATTTTTTGTTGCTTTACTTTGGAGA
TCGCTTTTCCCGAGTATCTTGCACCATCATTGCCGTTTCCTTTCCTGTAT
GAAGAGTGAGTACGTTGGACGTTGTTTTTCTTCCGGATGTTTTTTTTTCT
ACCTTGTAACTACGGGCTGGGTTTCGACATCTCAGCTTATATGTGAAAAT
TCAACAATTTATTATTCAATTGATGAAATCATGGTTAGATGCGTCTTTTA
CATTTATTTGTAATCTTCTCCAAAGCGTCTGCTGAAGTTTTCTCTTTCCT
TTTTTGTAAGAGAGGGGTTCTTCCTTTCACGACGTTTTTTGTTTGTTTGT
CTGCCTGAATGGACAACGATTCACAAGCCGGACAAACAAGCAGCCGTATC
TTACTTCGTACGATACGCCACGTACGGGTAGTCATGAACTTTTTAGTTGG
AGTCCAATCGACCCTCAGGCAGGCAAATCCCGCAAACGGAACCACCTAAG
CAAGAGAAGTAGTTCGTAATTTACTGCGCTGTACTCTGCCGTTCTTAATT
CACACAGAAAGCCAAACGCAAGAACCCGCCAAAGGGTTGTTAAGGCGATT
CATAGACTACTAATGGACGGAAAGCAGGGCGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig9:1394837..1400719-

>mRNA_F-serratus_M_contig9.20381.1 ID=mRNA_F-serratus_M_contig9.20381.1|Name=mRNA_F-serratus_M_contig9.20381.1|organism=Fucus serratus male|type=CDS|length=2730bp|location=Sequence derived from alignment at F-serratus_M_contig9:1394837..1400719- (Fucus serratus male)
ATGAACTGGACTATTTTCGTGATGAACTGGACTATTTTCGTGCTGGTGGG
GAGCGGACTCTTGTTCACGGCGGGTCTAGCCTGGTTCTTCACCGAAGCCT
GGGTTTTTGCCGTCCGCACCCACACGATCTGGCTCATAATCCTTCTCACC
ATCACCTCCACGGTCGCGATCACCGCCCAGATCTACCTGTTCGCCGTTGT
CGTGGCCGTCTACCCTCTGGTGGGGAGCGGACTCTTGTTCACGGCGGGTC
TAGCCTGGTTCTTCACCGAAGCCTGGGTTTTTGCCGTCCGCACCCACACG
ATCTGGCTCATAATCCTTCTCACCATCACCTCCACGGTCGCGATCACCGC
CCAGATCTACCTGTTCGCCGTTGTCGTGGCCGTCTACCCTGACTCAAATC
AAGACGGAGTGACTCAAATCAACCGCGAGGACTCAAATCAAGACGGAGTG
ACTCAAATCAACCGCGAGGCGTTCGCGTCTTTCCCGTTCGATTCCACCAC
TCGGCTAGTCCGACGCACGAGCTCGGCCATGCGGCCAGCCGTCGGCTGGA
AAGTCGTACCGTGCCGTGCGTCTCACGCGCCCTCTGCTAGCGCCACGGAT
ACTCCCGAAATGACGCCCCTTCCTGACATTTCCTCCGTAGCAGCGCTGTC
CGATTGCCAAGGAGGGGGTTTCCGAGTGGAGAACGTCCAGGAGACACGCC
AAGCAGGAAGCGAGGAGGGTGGAGGAAATCTCGTGGGTGCGTTCGCGGAT
CTTAACGGCACCGCGAGGTCTTCATCCTCCACCTCCACCGCTTCCCGCAT
TTCGAGGAAAGCGCCGGCAGAAACCCGTGTGTGCGAGCGGATTGATGCGC
TGGGAACAGTCGAAGGCAGTGAAGGTGGTGGCGATGAGGTGGGTTCCAGG
GCGGTGGCCGCGGCGGGAGAGTCTGAAGGCGCTGACTCCCCAAGGAATGT
GCAGTGTCACAGGCCCATTTACTATCGGAACAGTCCACCGATGCATCCTG
CACGTCACACTCCGCAACATATTCTCCAAGAACTCGGAGGCGAGGGAGGA
GGCCACGACTGCGCGAGAAGCTTTGCGCGAGAGCCCTGGCAAACATCAAG
CGGGCGCGATTCAGACGAGGGCACCGACCCTGAAACCGTTGAATTCCGAC
CTAACCCAGACACCTCCCGAGGGGCATCATCGCAGGGCGAAGCGATCGAG
GATGATATCCGGGGCGCGATTCGTGACAGGTCAATGGTGCGCGTCAGCGA
GCTTCCAGACGTGTGCGCAATATGTTTGGGGAAGTACTCCGCTGGAGAGA
GAGTGCACGTTTTGCCCTGTCTGCACATCTTCCACGCCGAGGCGTTCGCG
TCTTTCCCGTTCGATTCCACCACTCGGCTAGTCCGACGCACGAGCTCGGC
CATGCGGCCAGCCGTCGGCTGGAAAGTCGTACCGTGCCGTGCGTCTCACG
CGCCCTCTGCTAGCGCCACGGATACTCCCGAAATGACGCCCCTTCCTGAC
ATTTCCTCCGTAGCAGCGCTGTCCGATTGCCAAGGAGGGGGTTTCCGAGT
GGAGAACGTCCAGGAGACACGCCAAGCAGGAAGCGAGGAGGGTGGAGGAA
ATCTCGTGGGTGCGTTCGCGGATCTTAACGGCACCGCGAGGTCTTCATCC
TCCACCTCCACCGCTTCCCGCATTTCGAGGAAAGCGCCGGCAGAAACCCG
TGTGTGCGAGCGGATTGATGCGCTGGGAACAGTCGAAGGCAGTGAAGGTG
GTGGCGATGAGGTGGGTTCCAGGGCGGTGGCCGCGGCGGGAGAGTCTGAA
GGCGCTGACTCCCCAAGGAATGTGCAGTGTCACAGGCCCATTTACTATCG
GAACAGTCCACCGATGCATCCTGCACGTCACACTCCGCAACATATTCTCC
AAGAACTCGGAGGCGAGGGAGGAGGCCACGACTGCGCGAGAAGCTTTGCG
CGAGAGCCCTGGCAAACATCAAGCGGGCGCGATTCAGACGAGGGCACCGA
CCCTGAAACCGTTGAATTCCGACCTAACCCAGACACCTCCCGAGGGGCAT
CATCGCAGGGCGAAGCGATCGAGGATGATATCCGGGGCGCGATTCGTGAC
AGGTCAATGGTGCGCGTCAGCGAGCTTCCAGACGTGTGCGCAATATGTTT
GGGGAAGTACTCCGCTGGAGAGAGAGTGCACGTTTTGCCCTGTCTGCACA
TCTTCCACGCCGAGTGTCTGGACGTCTGGATCGTCTCGCATCCGTCCTGC
CCTTACTGCAAAGATAATCTCAATATTTTGCCGCCGGAGTGCGAGGTCAA
CGAGAGGCGGGACAACGCCCGGCGCTACGCGCTCCACTTCGTTTCTATTG
CCGAGTGGCCCCTCGAGTGGTTTCGTGAGCACCTGGTGCAAGGGCGTGAG
CGAATGAGGGCAGATGTTGGGGCGGCCCCGACTGCGGGAGGGGTGGTCGC
AGATGCCACACTTGGCTTATGATGTCTGGACGTCTGGATCGTCTCGCATC
CGTCCTGCCCTTACTGCAAAGATAATCTCAATATTTTGCCGCCGGAGTGC
GAGGTCAACGAGAGGCGGGACAACGCCCGGCGCTACGCGCTCCACTTCGT
TTCTATTGCCGAGTGGCCCCTCGAGTGGTTTCGTGAGCACCTGGTGCAAG
GGCGTGAGCGAATGAGGGCAGATGTTGGGGCGGCCCCGACTGCGGGAGGG
GTGGTCGCAGATGCCACACTTGGCTTATGA
back to top