mRNA_F-serratus_M_contig9.20372.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20372.1
Unique NamemRNA_F-serratus_M_contig9.20372.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 190 bits (483), Expect = 7.140e-50
Identity = 93/225 (41.33%), Postives = 144/225 (64.00%), Query Frame = 1
Query:    1 VARPKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKR 675
            V RP+D+ +IG+K ++K K G DG+VEKY+ RLVAQGF QVEG+ Y E ++P   + SIR+LLA+AA  D E+   D K +FL  ++EE+I +K+P   +    AVWRL KA+YGL QA R W  K   ++  +GF R +AD CVF+K +D    ++ V +VDD    +     + K  ++LG +F + D+G+  + ++  +TRNR+ R ++  Q  Y+E +++R
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAV-YVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILER 1253          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.610e-46
Identity = 90/244 (36.89%), Postives = 147/244 (60.25%), Query Frame = 1
Query:   10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGVPTLSKAD 741
            P+ +  +  K  +  K   +GK+ K++ RLVA+GF ++  V Y    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E+I +++P    +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +++V++VDD+     D+   ++ +A L KKF  K++G+  ++  C I R+ +A  LK  Q  Y+++MVKRFDV+   +IPA+ GV    K D
Sbjct:  201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPGVDLGPKRD 443          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.600e-45
Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query:   10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
            P+ +  + +K  +  K  ++GK++ ++ RLVA+GF Q+  V Y    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E++ +K+P    +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +++V++VDDI     D+   ++ +A L KKF  K++G+  ++  C I R+ +A  L+  Q  Y++SMV+RFDVK   +IPA  G 
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1011          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.720e-45
Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query:   10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
            P+ +  + +K  +  K  ++GK++ ++ RLVA+GF Q+  V Y    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E++ +K+P    +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +++V++VDDI     D+   ++ +A L KKF  K++G+  ++  C I R+ +A  L+  Q  Y++SMV+RFDVK   +IPA  G 
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1390          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.740e-45
Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query:   10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
            P+ +  + +K  +  K  ++GK++ ++ RLVA+GF Q+  V Y    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E++ +K+P    +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +++V++VDDI     D+   ++ +A L KKF  K++G+  ++  C I R+ +A  L+  Q  Y++SMV+RFDVK   +IPA  G 
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1410          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.760e-45
Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query:   10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
            P+ +  + +K  +  K  ++GK++ ++ RLVA+GF Q+  V Y    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E++ +K+P    +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +++V++VDDI     D+   ++ +A L KKF  K++G+  ++  C I R+ +A  L+  Q  Y++SMV+RFDVK   +IPA  G 
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1553          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.060e-45
Identity = 89/244 (36.48%), Postives = 147/244 (60.25%), Query Frame = 1
Query:   10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGVPTLSKAD 741
            P+ +  + +K  +  K  ++GK++ ++ RLVA+GF Q+  V Y    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E++ +K+P    +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +++V++VDDI     D+   ++ +A L KKF  K++ +  ++  C I R+ +   L+  Q  Y++SMVKRFDV+   +IPA+ GV    K D
Sbjct:  330 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRD 572          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.630e-44
Identity = 82/211 (38.86%), Postives = 131/211 (62.09%), Query Frame = 1
Query:   55 KLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVK 687
            K  ++GKV+K++  LVA+GF Q+  V +    SP PS+ASI+++LA+A  K   L H+D K+++  A ++E++ ++IP  + +    + +  +AIYGL Q+GR W     D +   GFE+ KADPCVF K+VD    +V+V++VDDI     D+   ++ +A L KKF  K+ G+  ++  C I R+ +    K  Q  Y++SMVKRFDV+
Sbjct:   10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKISQTAYIDSMVKRFDVQ 219          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 173 bits (438), Expect = 2.850e-44
Identity = 93/249 (37.35%), Postives = 146/249 (58.63%), Query Frame = 1
Query:    1 VARPKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVK--KAIKIPAASGVPTLSKAD 741
            V RP+D+ V+G K +++ K G DG++EKY+ R+VA+GF QVEGV YT+ ++P    ASIR LLA+AA  D E+   D K +FL  +++E+I +  P  FQ     VW+L KA+YGL QA R W  K   +  ++GF R+ AD  VF+K  DG   ++V V++DD+         ++   A+LG  + + D+G+A   ++  I R+R  R ++  Q  YVES++    +   + +  P A  +  L  +D
Sbjct:  317 VERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVL-LIVAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESILTHQGMADCRPVSTPMAQNLKLLKLSD 564          
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 169 bits (427), Expect = 4.540e-44
Identity = 91/245 (37.14%), Postives = 150/245 (61.22%), Query Frame = 1
Query:   28 IGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFP--GAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIK--IPAASGVPTLSKADGPR 750
            IG K +YK+K+G DGKVE Y+ RLVA+G+ Q EG+ Y E +SP     SIR+LLA+AA  D E+   D K +FL  +++E++ +  PE F        V +L ++IYGL QA R WN +F + +    F + + +PCV+ K+  G + + +V++VDDI     D  +M      L ++F +KD+G+A Y +   I R+R  R L   Q +Y+++++KR++++K+ +  +P   GV +LS+ + P+
Sbjct:  137 IGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPK 379          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK7.140e-5041.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JLS1_9PHAE2.610e-4636.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.600e-4537.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.720e-4537.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.740e-4537.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.760e-4537.13Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE3.060e-4536.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIS9_9PHAE1.630e-4438.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1C7MSU6_GRIFR2.850e-4437.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MAN7_TRIPR4.540e-4437.14Retrotransposon protein putative Ty1-copia subclas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:1148955..1150120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score124.0
Seed ortholog evalue7.7e-26
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons2
Model size1136
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20372.1prot_F-serratus_M_contig9.20372.1Fucus serratus malepolypeptideF-serratus_M_contig9 1149135..1149728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932619.6000319-UTR-F-serratus_M_contig9:1148954..11491341622932619.6000319-UTR-F-serratus_M_contig9:1148954..1149134Fucus serratus maleUTRF-serratus_M_contig9 1148955..1149134 +
1690964389.1742706-UTR-F-serratus_M_contig9:1148954..11491341690964389.1742706-UTR-F-serratus_M_contig9:1148954..1149134Fucus serratus maleUTRF-serratus_M_contig9 1148955..1149134 +
1622932619.6303961-UTR-F-serratus_M_contig9:1149728..11499141622932619.6303961-UTR-F-serratus_M_contig9:1149728..1149914Fucus serratus maleUTRF-serratus_M_contig9 1149729..1149914 +
1690964389.1963828-UTR-F-serratus_M_contig9:1149728..11499141690964389.1963828-UTR-F-serratus_M_contig9:1149728..1149914Fucus serratus maleUTRF-serratus_M_contig9 1149729..1149914 +
1622932619.6980348-UTR-F-serratus_M_contig9:1149944..11501201622932619.6980348-UTR-F-serratus_M_contig9:1149944..1150120Fucus serratus maleUTRF-serratus_M_contig9 1149945..1150120 +
1690964389.2075841-UTR-F-serratus_M_contig9:1149944..11501201690964389.2075841-UTR-F-serratus_M_contig9:1149944..1150120Fucus serratus maleUTRF-serratus_M_contig9 1149945..1150120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932619.6147485-CDS-F-serratus_M_contig9:1149134..11497281622932619.6147485-CDS-F-serratus_M_contig9:1149134..1149728Fucus serratus maleCDSF-serratus_M_contig9 1149135..1149728 +
1690964389.1855528-CDS-F-serratus_M_contig9:1149134..11497281690964389.1855528-CDS-F-serratus_M_contig9:1149134..1149728Fucus serratus maleCDSF-serratus_M_contig9 1149135..1149728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20372.1

>prot_F-serratus_M_contig9.20372.1 ID=prot_F-serratus_M_contig9.20372.1|Name=mRNA_F-serratus_M_contig9.20372.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLN
KAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVV
HVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARE
LKFDQHLYVESMVKRFDVKKAIKIPAASGVPTLSKADGPRNPMRRRK*
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mRNA from alignment at F-serratus_M_contig9:1148955..1150120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20372.1 ID=mRNA_F-serratus_M_contig9.20372.1|Name=mRNA_F-serratus_M_contig9.20372.1|organism=Fucus serratus male|type=mRNA|length=1166bp|location=Sequence derived from alignment at F-serratus_M_contig9:1148955..1150120+ (Fucus serratus male)
GTGGCTCGGCCGAAGGATAAGCTCGTGATTGGCACGAAAACGATATACAA GCAAAAACTCGGACAGGACGGCAAGGTCGAGAAGTACAGGTGTCGACTTG TCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGTATTACACGGAAAAGTAC TCGCCCACGCCATCAACCGCGTCAATCCGGATGCTTTTGGCGATGGCAGC GGCCAAGGACGGAGAGCTGCGCCATTTCGACGCAAAGCGGTCATTTTTGA AAGCGGATATTGAGGAAAAAATATGCATTAAGATCCCTGAGGAGTTTCAG GAGTTTCCGGGGGCAGTGTGGCGGCTAAACAAGGCCATTTACGGACTCGT GCAGGCGGGGAGGTGCTGGAACAATAAGTTCTGTGACGACATGACGGCCA TTGGGTTCGAGCGGGCAAAGGCGGACCCGTGCGTGTTCCACAAGGTCGTT GACGGTGAGGCGGAGGTGGTGGTGGTCGTACACGTAGACGACATCTTTGC CCACGCCAAAGACCAAGCGACGATGGATAAATTCGTTGCTGAGCTTGGGA AGAAGTTCAGATTGAAGGACATGGGCGACGCCGGGTACTACATGAGCTGT CACATCACAAGGAACCGCAAGGCGCGCGAGTTGAAGTTCGACCAACACTT GTACGTGGAGTCAATGGTAAAAAGGTTTGACGTCAAGAAGGCAATTAAGA TACCGGCTGCGTCGGGGGTGCCGACGCTCTCAAAGGCGGATGGACCGCGG AACCCAATGAGAAGGAGGAAATGAGGAAGTTCCCGTACCGAGAGGCAGTG GGGGCGCTCATGTGGACAGCGACGATGACACGGCCGGATATTGCGTGCGC CGTACGCGCTGTGGCCAGGTTCTGTGAAAACCCTAGGCCGGCGCATAAGA AGGCAGTGATGAAGATTTTCCGGTATCGCCTTCACACGAAAGAATGGGGG ATTAAGTGCGGTGGATAGGGCTGTGGACTTTGCTTGGGAGTGTATACGTA CTCTGATTTTGGAGGCTGCCTGAACACAAGACGGTCGGTTTCGGGTGCGG TGTTGATGTTGGCGAAGGGAGCGATCAGCTGGCACTCAAGGATGCAAGAA GTGACAGCGTCGGGTACCTCGGAGGCAGAGTACGTTGCCTTATCAGAGGT GGTAAAGGAAGTACTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:1148955..1150120+

>mRNA_F-serratus_M_contig9.20372.1 ID=mRNA_F-serratus_M_contig9.20372.1|Name=mRNA_F-serratus_M_contig9.20372.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig9:1148955..1150120+ (Fucus serratus male)
ATGCTTTTGGCGATGGCAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGA
CGCAAAGCGGTCATTTTTGAAAGCGGATATTGAGGAAAAAATATGCATTA
AGATCCCTGAGGAGTTTCAGGAGTTTCCGGGGGCAGTGTGGCGGCTAAAC
AAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGCTGGAACAATAAGTT
CTGTGACGACATGACGGCCATTGGGTTCGAGCGGGCAAAGGCGGACCCGT
GCGTGTTCCACAAGGTCGTTGACGGTGAGGCGGAGGTGGTGGTGGTCGTA
CACGTAGACGACATCTTTGCCCACGCCAAAGACCAAGCGACGATGGATAA
ATTCGTTGCTGAGCTTGGGAAGAAGTTCAGATTGAAGGACATGGGCGACG
CCGGGTACTACATGAGCTGTCACATCACAAGGAACCGCAAGGCGCGCGAG
TTGAAGTTCGACCAACACTTGTACGTGGAGTCAATGGTAAAAAGGTTTGA
CGTCAAGAAGGCAATTAAGATACCGGCTGCGTCGGGGGTGCCGACGCTCT
CAAAGGCGGATGGACCGCGGAACCCAATGAGAAGGAGGAAATGAATGCTT
TTGGCGATGGCAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGACGCAAA
GCGGTCATTTTTGAAAGCGGATATTGAGGAAAAAATATGCATTAAGATCC
CTGAGGAGTTTCAGGAGTTTCCGGGGGCAGTGTGGCGGCTAAACAAGGCC
ATTTACGGACTCGTGCAGGCGGGGAGGTGCTGGAACAATAAGTTCTGTGA
CGACATGACGGCCATTGGGTTCGAGCGGGCAAAGGCGGACCCGTGCGTGT
TCCACAAGGTCGTTGACGGTGAGGCGGAGGTGGTGGTGGTCGTACACGTA
GACGACATCTTTGCCCACGCCAAAGACCAAGCGACGATGGATAAATTCGT
TGCTGAGCTTGGGAAGAAGTTCAGATTGAAGGACATGGGCGACGCCGGGT
ACTACATGAGCTGTCACATCACAAGGAACCGCAAGGCGCGCGAGTTGAAG
TTCGACCAACACTTGTACGTGGAGTCAATGGTAAAAAGGTTTGACGTCAA
GAAGGCAATTAAGATACCGGCTGCGTCGGGGGTGCCGACGCTCTCAAAGG
CGGATGGACCGCGGAACCCAATGAGAAGGAGGAAATGA
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