mRNA_F-serratus_M_contig9.20370.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 402 bits (1032), Expect = 5.090e-129 Identity = 254/472 (53.81%), Postives = 296/472 (62.71%), Query Frame = 1
Query: 13 VTDVAIDDHPSVFFKISIDLLLDGCEPGSDEDDTVGDRPLSSRLHDPGAVEARCVASRLLGRISAEGFTDGIRRMDRNKASKSALDALCCAVETAVSANLGLSTPSADVFVRENLFPGAISASRRRLAAVAREQRAIVAWGNTNTQARDFRGALEQAESTGRPVRFLRWGYELPRLGLDELSRRNVYRFATTGRYVETAAIETALARVARLYASTDGGDPARLALAAGFRMDTSGRVSSLSSHSSSKAAGNGTNTPKPRSGVLTTGDPAARVGGDGGGSDLSEKSSPLRSGGGSELCTSASVFKTPDYGYLGDGRPSPQAISPSGSPPVARPMPFRRLAGETEEMGRFGAVGSVGKLGLAQEWSPRGG--------RRLATDGGGLITASTRGRRQAWASPTVMFAREWKNMREWRRNGYSDDDIDPTMGACYFPKPANSTGVLKRFD-ADGTNADMEEMDLVRRIRNFRQK 1401
V DV IDDHPSV+ KI LLL GC G ED + R LS RL DPG VE R VA RL G ISAE F + R +AS +A+ ALC AVE+AVS N +STP+ DVFVRENLFP AIS+S+ RLAA AR++ +VAWGNTNTQARD+RGALEQAE TGRPVRFLRWG+ELP L L+ELSRRNV RFA TGRYVETAAIE ALARV +LYAST GGDPARLALAAGF+MD SGRV S S + G+ + R G D +A GG G SE R G S + F G + ++ P PP+ARP+P T R + LGLAQEW+PRGG RR +D GG PTVMF EW REWRR GY+DDDIDP MG+C+F PANSTGVL+R D +GT AD+EEM+LVRRI++ RQ+
Sbjct: 343 VADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGEC-RGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGRVHSQPSPPRRRGNGSWEKNTRRRVGGGGRADTSAHSGG---GIGSSEGVVRGRDGAWDNRGGSETWFHDQASGRTMRREATSHSVPPP--PPMARPIPAAGPDRFTLGADRRRYEYTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGGGAGGPE------GVPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQR 802
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 376 bits (965), Expect = 9.740e-123 Identity = 252/478 (52.72%), Postives = 301/478 (62.97%), Query Frame = 1
Query: 46 VFFKISIDLLLDGCEPGSDEDDTVGDRPLSSRLHDPGAVEARCVASRLLGRISAEGFTDGIRRMDRNKASKSALDALCCAVETAVSANLGLSTPSADVFVRENLFPGAISASRRRLAAVAREQRAIVAWGNTNTQARDFRGALEQAESTGRPVRFLRWGYELPRLGLDELSRRNVYRFATTGRYVETAAIETALARVARLYASTDGGDPARLALAAGFRMDTSGRVSSLSS-----HSSSKAA---GNGT---NTPKPRSGVLTTGDPAARVGGDGGGSDLSEKSSPLRSGGGSELCTSASVFKTPDYGYLGDGRPSPQAISPSGSPP---VARPMPFR---RLAGETEEMGRFGAVGSVGKLGLAQEWSPRGG--------RRLATDGGGLITASTRGRRQAWASPTVMFAREWKNMREWRRNGYSDDDIDPTMGACYFPKPANSTGVLKRFD-ADGTNADMEEMDLVRRIRNFRQK 1401
V+ KI LLL GC GS ED + RPLS RL DPG VE R V RL G ISAE F + R +AS +A+ ALC AVE+AVS N+ +STP+ DVFVRENLFP AIS+S+ RLAA A ++ +VAWGNTNTQARD+RGALEQAE TGRPVRFLRWG+ELP L L+ELSRRNV RFA TGRYVETAAIE ALARV +LYAST GGDPARLALAAGF+MD SG V S SS H S ++ GNG+ NT + R G T D +A GG GGS+ + R G S + F R + + + G P +A+P P R E + R+ G+ LGLAQEW+PRGG RR +D G + A PTVMF EW REWRR GY+DDDIDP MG+C+F PANSTGVL+R D +G AD+EEM+LVRRI++FRQ+
Sbjct: 40 VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGEC-RGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRR-RVGGGGTADTSAYSGGGIGGSEGVVRG---RDGAWDNRGGSGTWFHDE-----ASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAP--LGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGP------AGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQR 499
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 172 bits (435), Expect = 9.110e-44 Identity = 104/244 (42.62%), Postives = 144/244 (59.02%), Query Frame = 1
Query: 10 RVTDVAIDDHPSVFFKISIDLLLDGCEPGSDEDDTVGDRPLSSRLHDPGAVEARCVASRLLGRISAEGFTDG-IRRMDRNKASKSALDAL-CCAVETAVSANLGLSTPSADVFVRENLFPGAISASRRRLAAVAREQRAIVAWGNTNTQARDFRGALEQAESTGRPVRFLRWGYELPRLGLDELSRRNVYRFATTGRYVETAAIETALARVARLYASTDGGDPARLALAAGFRMDTSGRVSSLS 735
R+ DVAIDDHP V++K+ LD +D + D+ +S R+ D V VA RL G ++A+ F + + ++ ++ L AVE AV+A L + TP+ D+FV +P + S RRL VAWGNTNT+++D+R ALE A++ RPVR+LRWG+ELP + L +L R++ RFA TGRYV A+ AL RV LYA TDGGDPA L AAGF+M RV ++S
Sbjct: 120 RICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAAVEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAAGFQMGAGARVRAVS 363
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.410e-34 Identity = 142/467 (30.41%), Postives = 202/467 (43.25%), Query Frame = 1
Query: 13 VTDVAIDDHPSVFFKISIDLLLDGCEPGSDEDDTVGDRPLSSRLHDPGAVEARCVASRLLGRISAEGFTDGIRRM-------DRNKASKSALDALCC-AVETAVSANLGLSTPSADVFVRENLFPGAISASRRRLAAVAREQRAIVAWGNTNTQARDFRGALEQAESTGRPVRFLRWGYELPRLGLDELSRRNVYRFATTGRYVETAAIETALARVARLYASTDGGDPARLALAAGFRMDTSGRV-SSLSSHSSSKAAGNGTNTPKPRSGVLTTGDPAARVGGDGGGSDLSEKSSPLRSGGGSELCTSASVFKTPDYGYLGDGRPSPQAISPSGSPPVARPMPFRRLAGETEEMGRFGAVGSVGKLGLAQEWSPRGGRRLATDGGGLITASTRGRRQAWASPTVMFAREWKNMREWRRNGYSDDDIDPTMGACYFPKPANSTGVLKRFDADGTNADMEEMDLVRRIR 1386
V DVAID+HP V++++ +LD ED T+ R LS RL G VA RL G +S+ F + + DR+ +D + +VE AV+ + L P+ D+F+ E P + L +R VAWGNTNT+ARD+ AL A+ RPV F+R+G+E+P + + EL RN+ RFA TGR++ + A RV LYA T GG+PARLA AAGF MD GRV + +SH+++ A L A + SP + GY G A+SP+ +PP+ R+A T G + A+ S G R S RG EW +R WR ++ +D+DP PK GV K D+ D + +DLV+ I+
Sbjct: 91 VFDVAIDEHPDVYYELPTAYILDPTSTTL-EDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEAEWKAIAGPYLLADRD------VDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAAGFIMDDEGRVRAEPTSHAAAALA-------------LHVAPRAVQ--------------SPW------QQXXXXXXXXXXQRGYAAAGGAVALALSPA-APPLPWDAAAARIADAT--CGAWEALTSSAAXXXXXXXXXXRGAR----------GSRRG--------------EWSRIRAWRHMQWTREDLDPQFPPFLDPKNGTGNGVKKTGDS---YVDFDTIDLVKIIK 487
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.100e-10 Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 352 NLFPGAISASRRRLAAVAREQRAI-----VAWGNTNTQARDFRGALEQAESTGRPVRFLRWGYELPR-LGLDELSRRNVYRFATTGRYVETAAIETALAR 633
+L P AI S +RL+ R++ VAWGNTN++ARDF+ A+ A GR VRFLRWG EL + +G +EL RNV+R G+YV AI AL R
Sbjct: 102 DLLPQAIRRSYQRLS------RSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALER 195
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 6.860e-10 Identity = 74/244 (30.33%), Postives = 103/244 (42.21%), Query Frame = 1
Query: 13 VTDVAIDDHPSVFFKISIDLLLDGCEPGSDE-------DDTVGDRPLSSRLHDPGAVEARCVASRLLGRISAEGFTDGIRRM-----------------------DRNKASKSALDALC-----CAVETAVSANLGLSTPSADVF--VRENLFPGAISASRRRLAAVAREQRAI-----VAWGNTNTQARDFRGALEQAESTGRPVRFLRWGYELPR-LGLDELSRRNVYRFATTGRYVETAAI 615
+ DVAIDD ++ + + L L+G D + R LSSR D VE+R V L G E +R + + ++ L AL A T V S P+A + +L P AI S +RL R++ VAWGNTN++ARDF+ A+ A GR V F+RWG EL + +G +EL RNV+R G+YV I
Sbjct: 118 LVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLT------RSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTI 355 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig9.20370.1 >prot_F-serratus_M_contig9.20370.1 ID=prot_F-serratus_M_contig9.20370.1|Name=mRNA_F-serratus_M_contig9.20370.1|organism=Fucus serratus male|type=polypeptide|length=468bp ANFRVTDVAIDDHPSVFFKISIDLLLDGCEPGSDEDDTVGDRPLSSRLHDback to top mRNA from alignment at F-serratus_M_contig9:929655..932966- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig9.20370.1 ID=mRNA_F-serratus_M_contig9.20370.1|Name=mRNA_F-serratus_M_contig9.20370.1|organism=Fucus serratus male|type=mRNA|length=3312bp|location=Sequence derived from alignment at F-serratus_M_contig9:929655..932966- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig9:929655..932966- >mRNA_F-serratus_M_contig9.20370.1 ID=mRNA_F-serratus_M_contig9.20370.1|Name=mRNA_F-serratus_M_contig9.20370.1|organism=Fucus serratus male|type=CDS|length=2808bp|location=Sequence derived from alignment at F-serratus_M_contig9:929655..932966- (Fucus serratus male)back to top |