mRNA_F-serratus_M_contig9.20367.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20367.1
Unique NamemRNA_F-serratus_M_contig9.20367.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig9.20367.1 vs. uniprot
Match: D8LAY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.160e-10
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:  841 AKLDGLLRETKDLTLAAETAAARDGEARNALRRAMAEADQRASEAVRAERARSDGMYALVQALEERLLERENRVRVLDAQLQDR 1092
            ++LD L R  KDLTL+A TA   D E R ALRRA+ EAD RA +AV AERA+S+ + ALVQALE+RL ER+ +V+ L AQ++DR
Sbjct:  377 SELDDLRRRVKDLTLSAATAETGDVEGRAALRRALEEADARARDAVVAERAKSESLGALVQALEQRLRERDEQVQRLTAQVKDR 460
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BLAST of mRNA_F-serratus_M_contig9.20367.1 vs. uniprot
Match: A0A6H5JTU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.120e-9
Identity = 94/278 (33.81%), Postives = 125/278 (44.96%), Query Frame = 1 
Query:  841 AKLDGLLRETKDLTLAAETAAARDGEARNALRRAMAEADQRASEAVRAERARSDGMYALVQALEERLLERENRVRVLDAQ---------------------LQDRNSRLQQAGHEVPIDESLAPIAVQKGV-----------KGNEDGNLS---GRGYSQSGSTPAAPDPLGGGGIYGMSGGDSRG---REDSSG------RDRAFGAGEEPRRSLSVTSIGQGGDGSRVGMLAWLRKDRQGSAPR---KQSSQPL-----VEDHERIGRLYSMIARK 1518
            A+LD L R  KDLTL+A +A     E R ALRRA+ EAD RA +AV AERA+S+ + ALVQALE+RL ER+ +V+ L A                      L++R    +  G       + A +A  +             +G++DG  S   G G   S S   AP  +   G  GM+     G   R  + G      RD +FG      + L+V     G    R   L W  +   G       K  S PL     V+DHER+G LYSMIAR+
Sbjct:  375 AELDDLRRRVKDLTLSAASAKTGSVEGRAALRRALEEADARARDAVVAERAKSESLGALVQALEQRLRERDEQVQRLTAXXXXXXXXXXXXXXXXXXXXXXLEERLILDKTLGEPPAQGSAAAALASDRTPPGDDDLAAPHPEGSDDGVSSPRVGLGTRSSPSLSPAPGTVAAAGT-GMAASPRLGEGNRRSTMGPGAVLSRDDSFGY---ALKGLAVGYAVGGAPSGRAEALGWWSRGGWGDGNPGMVKNQSLPLPPAVVVDDHERLGSLYSMIARR 648
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAY3_ECTSI4.160e-1058.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTU0_9PHAE9.120e-933.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:787166..792169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue4e-11
Seed eggNOG ortholog2880.D8LAY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_005990.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2464
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20367.1prot_F-serratus_M_contig9.20367.1Fucus serratus malepolypeptideF-serratus_M_contig9 787934..791197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932617.1434138-UTR-F-serratus_M_contig9:787165..7879331622932617.1434138-UTR-F-serratus_M_contig9:787165..787933Fucus serratus maleUTRF-serratus_M_contig9 787166..787933 +
1690964388.4751985-UTR-F-serratus_M_contig9:787165..7879331690964388.4751985-UTR-F-serratus_M_contig9:787165..787933Fucus serratus maleUTRF-serratus_M_contig9 787166..787933 +
1622932617.4320052-UTR-F-serratus_M_contig9:791197..7913001622932617.4320052-UTR-F-serratus_M_contig9:791197..791300Fucus serratus maleUTRF-serratus_M_contig9 791198..791300 +
1690964388.531084-UTR-F-serratus_M_contig9:791197..7913001690964388.531084-UTR-F-serratus_M_contig9:791197..791300Fucus serratus maleUTRF-serratus_M_contig9 791198..791300 +
1622932617.4470103-UTR-F-serratus_M_contig9:791329..7921691622932617.4470103-UTR-F-serratus_M_contig9:791329..792169Fucus serratus maleUTRF-serratus_M_contig9 791330..792169 +
1690964388.5417376-UTR-F-serratus_M_contig9:791329..7921691690964388.5417376-UTR-F-serratus_M_contig9:791329..792169Fucus serratus maleUTRF-serratus_M_contig9 791330..792169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932617.39025-CDS-F-serratus_M_contig9:787933..7881881622932617.39025-CDS-F-serratus_M_contig9:787933..788188Fucus serratus maleCDSF-serratus_M_contig9 787934..788188 +
1690964388.4903471-CDS-F-serratus_M_contig9:787933..7881881690964388.4903471-CDS-F-serratus_M_contig9:787933..788188Fucus serratus maleCDSF-serratus_M_contig9 787934..788188 +
1622932617.4062114-CDS-F-serratus_M_contig9:790223..7903221622932617.4062114-CDS-F-serratus_M_contig9:790223..790322Fucus serratus maleCDSF-serratus_M_contig9 790224..790322 +
1690964388.504208-CDS-F-serratus_M_contig9:790223..7903221690964388.504208-CDS-F-serratus_M_contig9:790223..790322Fucus serratus maleCDSF-serratus_M_contig9 790224..790322 +
1622932617.4201636-CDS-F-serratus_M_contig9:790798..7911971622932617.4201636-CDS-F-serratus_M_contig9:790798..791197Fucus serratus maleCDSF-serratus_M_contig9 790799..791197 +
1690964388.5160174-CDS-F-serratus_M_contig9:790798..7911971690964388.5160174-CDS-F-serratus_M_contig9:790798..791197Fucus serratus maleCDSF-serratus_M_contig9 790799..791197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20367.1

>prot_F-serratus_M_contig9.20367.1 ID=prot_F-serratus_M_contig9.20367.1|Name=mRNA_F-serratus_M_contig9.20367.1|organism=Fucus serratus male|type=polypeptide|length=251bp
MSENSLLVKSLDHLQHETLAVADDAKLDGLLRETKDLTLAAETAAARDGE
ARNALRRAMAEADQRASEAVRAERARSDGMYALVQALEERLLERENRVRV
LDAQLQDRNSRLQQAGHEVPIDESLAPIAVQKGVKGNEDGNLSGRGYSQS
GSTPAAPDPLGGGGIYGMSGGDSRGREDSSGRDRAFGAGEEPRRSLSVTS
IGQGGDGSRVGMLAWLRKDRQGSAPRKQSSQPLVEDHERIGRLYSMIARK
*
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mRNA from alignment at F-serratus_M_contig9:787166..792169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20367.1 ID=mRNA_F-serratus_M_contig9.20367.1|Name=mRNA_F-serratus_M_contig9.20367.1|organism=Fucus serratus male|type=mRNA|length=5004bp|location=Sequence derived from alignment at F-serratus_M_contig9:787166..792169+ (Fucus serratus male)
CGAGTGATCTTAAGGGCGCTTGGCAAGGCTCGGAGGGAAGGATCCCCGCC
CCCGCCCAGACCATCGAGCCACAGACGAAGAGGCCGTGCAGACAGCCACA
CCCACAGTCGCAGAGGACCACCCTCGAACGGCATCAACGGGGGGTACGGT
AACGCGGACTCCAGCAACGGCCTTGGCCGCAACAGTCGTTCCTCCCACAC
CATCGGGGCCAGCAACGGTCACGATCACGTCCATGATCGCCGACAGAAGA
GCGGCCAAATATCGGAGCGGGCGGAAAACGCCCCCCCCTGGCAATCACAC
CCCGGGTCGGCCTCGGTGCGGCTGGTCGTCGCACCTTCTCCTTCGCTCCC
CGGTGCCGCTGCCGCCGCCGCCGCCGCTGCAGCTCTTGCCCACGACCCCA
CGCGACCCGCCCGACCGGCGAGTGTTTCCATCAATCGCGGTCCGCTTGAG
GATGCAGGGGACAATTCCGAGTCCGTTCTGGCGGCGGAGGCTGCGTTAGC
GGCGGCGGCCTGGAGCCCCAAGTTCCTTCAAGAGCAGAACGGACGGGGGC
CAGACACGGGTTCGGGTACGGCTGCGGCGGCGTTTTCCTCTGGCCGGGGG
CGTGGATCTATCCGCGATGCACGCGAGCAAGAGCAGACCCGCGCAGTTGC
CGCCGGAGACGATATACATGGAAACCCGGCGGAGGCGGGAGCGACGTGGG
CGTCAGGGGGTGCAGCGGCAGCGGTGGCAGTCACTGGAGGTAATGGTTCC
CGTCCCGAGAGAAGAGTGATGTCCGAAAATTCTCTCCTGGTCAAGTCGCT
GGACCATCTGCAGCATGAGACGTTGGCAGTCGCAGACGACGCGAAGCTGG
ACGGTTTGCTCCGGGAGACAAAAGATCTGACGCTGGCAGCGGAGACAGCG
GCGGCGAGGGACGGCGAAGCGAGGAACGCGCTGCGGCGAGCAATGGCGGA
GGCGGATCAGCGCGCGTCGGAGGCCGTTAGGGCGGAGCGTGCGAGGTCGG
ACGGGATGTACGCCCTCGTCCAGGTGAGTTGCGGGGCTGGTTAAATCCGT
TCGGTAGCCCCATGGAATTTTCAAAACGTTGGGGGAAGAGGAAGGGGAGG
TTTGTAGAGGAGGGGTCGGGAACGGAATACACTTTTACCCCCTAGCGAGA
TATATTTTCAGCTGATCTGGAACTACTTGTAGAGTATACACTGAAAACAA
CAGTTTCAGAACGCCCAATCTCTTCCTTGAGGACGGTTCTCAGAAAATAT
ACTCCAGGGATAAACACCGCGTGGATATAGACAACCGCGCACCAGTTCTC
CGCTCGTCCCCCGTACACCCTGTACACCTGCTTGACCAGTGGCCGTTAGG
CGCACAAATATCGCACTCTATGGACCTTTTGAGAGTCGAATCATGTGCAG
GAGAGGGGGAAAGGGGAGTTGGTGTATCCTGCAGGCGTTTTTATTTCAGG
GAAGGGTCGGCAATTTTGTATTTTCACCTTTTGGCCTTTCAGATTTTTGG
ATAGTTTTTTGAGAATGCGCGGATGATGAAAACACCGAACCTGTGACTGT
ATATAGTGTAGGAGTCATGCTCTACGGCAAACGAACTGAGGCAGAAATAA
AACGCTATTAGGGCGGTTTTCATGGGACAAAATCTTGTCCAAAATTCTCG
ATCTTGCCCAAGATTTTCCCAACAAGATTTTGTTTCAATTTTTATGGGTA
AACCTGTTCGCAAAAATTTATCCCCAAGATTTTCAGATGGTTTGAAATAT
GCCCTCTTGGCAAAATCTTGGCCCAAGATTTTGAAATGGCAGCTGTCACG
AAAATCTTAGGACGACAAGACAAATTAATTGCGCCGCTTCTCTCTATGGA
AAATCGTAAAAACATTTTAAACAAAAACGCACACAGCATGTACGGCGGTG
ACTGCGATGCAGTGATAATCAAAGCTTCTGTCGCTGTGACCCATGTACAG
AGAAACACGAACTTGGTCGCTTCCACGATGAATATAAGATGTCATACGAA
ACGCGAATGGGAGGCCAAGTCTCCCGCTTCTCGGCAAGCATGATCAAGCT
CATTTGGAGCAGCACTCAGGTCCTCCAGCTTTTACAGCCATTGTCCCCAG
GTCGATGCCACGTGTTGGTTTTCCCTCCTCCTACTGCTCGTCCTCCAGCC
ACCAAAAAAGTCCGTTCCTGCTCGTGACAAATCAAAACCAAACAAGTCAA
GCCTCTCATCCCCAGAACCAGCCTGCTGACTGAGGCTCTGTACGCGAGTC
ACAGCGGCAGCAGCTTTGACCATCGCTGTGTTGCAGTCACCGCCGTACAT
GCTGTGTGCGTTTTTGTTTGGAGTGTTTTACGATTTTCCGCTGAGAGAAG
CGGCGCAATTGATTTGGCTCGCTGCCCTAAGATTTTCGTGACGGCTGCTA
TTTCGAAACCCTGGGCCAAGATTTTGCCAAGAGGGCACATTTCCGACCAT
CACCAGTTGAATACGGTTTAAACAAAACGACTGGAGCTGCAATTTTACCT
TCCGATGTGATCTCCACGTCCAAGAATCGATGTGATATCGATATCTCCGC
CCATGGTGTGAGAAATACAGTAGTACCAGATCATGACAACCAGATAACGT
GATGTAATGTGTAATCTTAAACCCCGCCCTAACGGCTCATTCATTGGGTG
CACTCTATAGTACGGTAGAAAGATAGATGCCACGAGTGCCCTAGAGCCTC
TACTGCGGCGCGTTATTTTACTAAAAATGCACCTTTTGACAAATATATTA
TATGTCTAAGGTTTGGATTTATCTGTGGCAGGGATTTTGCGTGCCGATTC
TTTTTACATGTACCATCGAGGACCTTCGATCTTTTGGTGCCTCTTCCCAC
CGCTGCAAGTATCCTTATCCGTTCGTGGCAGACATGAAATATTTAACCGT
AGACTCCTCTCAGAGATTAGCGGGAAGTGAGCAGAAAAACTTGCGCTGCT
CGTTCTGAAGTCGTAGCTCTCCCCTTTTGGATGACCTCTGAGTAACCCCT
TTCCCCCCGGCACGGTGACCTTGGTGGTGGGCCCTTGGCGTGTCTCCGTG
TCCTCAAGGCTCTCGAGGAACGCCTCCTTGAGAGAGAAAACCGAGTACGG
GTTCTTGATGCGCAGCTGCAGGATCGGAACTCTCGTCTGCAACAAGCGGG
GCACGAGGTGAGACAAGGCGTTTCTTGGGAGGAGTTAGGTGGGGCCTTTT
GGGAGTTGAGTTCTGCCATTGTATTCCTTATCAGTCCAAGTTGATGGTTG
ACCTCTGGAGATTGAATACGACCACACGCCTCGCCCTGACAACGAGAAAT
TTTTCCTAGAACTCCTTCGTCCATCGTCGACTTTCGGAATGGCGCCACAC
GGCAACACTTCATATCATACACCACGTTGCGCCACACATGACGCCGTCAC
GCCATGCCATTTCACGTCACACACTCGACATCATACATCGTCACACGAGA
TCATCTTACGTCACACGACGTCGTACCACATGACTAACGTCGCAGCAAAC
TCTTACGCCATCGTATACGATCCGATCACGCGATGCGTCCCAAGCCACAT
TTTCCCGTCGCGCTGAACCTCGCGCCCTCTCAAAATCCAGAGTACTTTCT
AAAAAACAATACATTTTCTCTCGAAAGAAGCAGGTCCCCATAGATGAAAG
CTTGGCTCCGATCGCAGTTCAAAAAGGAGTGAAGGGTAACGAAGACGGGA
ACCTTTCGGGGAGGGGCTATTCCCAGAGCGGATCGACTCCCGCCGCGCCT
GACCCACTGGGAGGCGGTGGGATTTACGGCATGTCTGGAGGCGACAGCCG
CGGCCGGGAAGATTCCTCTGGCAGAGACCGGGCGTTTGGAGCTGGAGAAG
AACCTCGGCGTTCCTTGTCGGTGACTTCGATAGGACAGGGTGGAGACGGT
TCACGCGTGGGAATGCTTGCATGGTTGCGGAAAGATCGGCAAGGGAGCGC
ACCGAGGAAGCAGTCGTCCCAGCCTCTGGTGGAGGATCACGAGCGTATCG
GCAGGCTGTATTCCATGATCGCGAGAAAATGAACTGACAAAAAAATGGTC
TTCACTGTAGTAACCCCGTCAGTGGTGATCTCGCTTAGATCTGTAAAAAT
AGCGCAGCATTGGTGGAAGATTAGTGAAGCTCTTTGTCTCTCTTTACGGG
GGAAGGGAAGGGAGGGAGGCGTCTGGTCTCTTGTCGATAGAATCAATGAA
ATTTTTGTGAATAATTCGGACACCGTAGGAGGAGCCAGAGGATGTGACTG
GTTCGTGTGAGCCCCAACCACAGCGTTTCCCGGCTTCGAGTTTGAGCGTT
AAAGCCTCGCCGTGTTTCTGTGGCCTCGTGTCTTGTGTGGGGTTTCCCCG
GCGGTTTGACTACTGCGGTTACGCGCGTAGGAGCGCACATGTGTTGGGGT
GTTCTTTTGACATTCGTGCTGGCAAGTGATCGACCTTAGCTATGTACTGA
GACCAAATCAAAAGCCCACGTTAGTGCACTATTCGTACGACTATAATATG
CATTCAGAGTTTGATCGCGAGTCAAAGTAGGGTTTCCACACCATGGGAGT
TGGCATGCTTAAAGAACAGGGGAGGATGATCGGTAGAGTCTCCTTTTCAG
TTGATACGCTCTCTAAACACGAAATTATTAGCGTTGTTAGCGTGCCGGTG
TGTCTTCTCATGATTATGTGTGGTGTTGATGTTTAGTTGTCTTCTTTCTG
CGGCATGGCCAGCTGTGGTACTCTTTGTTCCCCCTTTTTTTTCCTTGTTT
TTTCCTTTTTTTTTCTTTCGATTTTTAGCTGCCGCGACTCTCTTACTTTA
CAACGGTATACTGTACCCAATATAGCTATATAGGGGTTGCAATTCGGGCG
CGGTAGAGTGAAAAATATCTTCGTAGGTTTATGCAGCGCGGCAGACTGCG
TTTTCACCTTCACCGAGGGCCCTGACAACGACGAGCGAGTGTGATCAAAA
TATCTATTATATATGTCATACATGGTGCAAAGTTTTCCATGAAACGAAAG
AAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:787166..792169+

>mRNA_F-serratus_M_contig9.20367.1 ID=mRNA_F-serratus_M_contig9.20367.1|Name=mRNA_F-serratus_M_contig9.20367.1|organism=Fucus serratus male|type=CDS|length=1506bp|location=Sequence derived from alignment at F-serratus_M_contig9:787166..792169+ (Fucus serratus male)
ATGTCCGAAAATTCTCTCCTGGTCAAGTCGCTGGACCATCTGCAGCATGA
GACGTTGGCAGTCGCAGACGACGCGAAGCTGGACGGTTTGCTCCGGGAGA
CAAAAGATCTGACGCTGGCAGCGGAGACAGCGGCGGCGAGGGACGGCGAA
GCGAGGAACGCGCTGCGGCGAGCAATGGCGGAGGCGGATCAGCGCGCGTC
GGAGGCCGTTAGGGCGGAGCGTGCGAGGTCGGACGGGATGTACGCCCTCG
TCCAGATGTCCGAAAATTCTCTCCTGGTCAAGTCGCTGGACCATCTGCAG
CATGAGACGTTGGCAGTCGCAGACGACGCGAAGCTGGACGGTTTGCTCCG
GGAGACAAAAGATCTGACGCTGGCAGCGGAGACAGCGGCGGCGAGGGACG
GCGAAGCGAGGAACGCGCTGCGGCGAGCAATGGCGGAGGCGGATCAGCGC
GCGTCGGAGGCCGTTAGGGCGGAGCGTGCGAGGTCGGACGGGATGTACGC
CCTCGTCCAGGCTCTCGAGGAACGCCTCCTTGAGAGAGAAAACCGAGTAC
GGGTTCTTGATGCGCAGCTGCAGGATCGGAACTCTCGTCTGCAACAAGCG
GGGCACGAGGCTCTCGAGGAACGCCTCCTTGAGAGAGAAAACCGAGTACG
GGTTCTTGATGCGCAGCTGCAGGATCGGAACTCTCGTCTGCAACAAGCGG
GGCACGAGGTCCCCATAGATGAAAGCTTGGCTCCGATCGCAGTTCAAAAA
GGAGTGAAGGGTAACGAAGACGGGAACCTTTCGGGGAGGGGCTATTCCCA
GAGCGGATCGACTCCCGCCGCGCCTGACCCACTGGGAGGCGGTGGGATTT
ACGGCATGTCTGGAGGCGACAGCCGCGGCCGGGAAGATTCCTCTGGCAGA
GACCGGGCGTTTGGAGCTGGAGAAGAACCTCGGCGTTCCTTGTCGGTGAC
TTCGATAGGACAGGGTGGAGACGGTTCACGCGTGGGAATGCTTGCATGGT
TGCGGAAAGATCGGCAAGGGAGCGCACCGAGGAAGCAGTCGTCCCAGCCT
CTGGTGGAGGATCACGAGCGTATCGGCAGGCTGTATTCCATGATCGCGAG
AAAATGAGTCCCCATAGATGAAAGCTTGGCTCCGATCGCAGTTCAAAAAG
GAGTGAAGGGTAACGAAGACGGGAACCTTTCGGGGAGGGGCTATTCCCAG
AGCGGATCGACTCCCGCCGCGCCTGACCCACTGGGAGGCGGTGGGATTTA
CGGCATGTCTGGAGGCGACAGCCGCGGCCGGGAAGATTCCTCTGGCAGAG
ACCGGGCGTTTGGAGCTGGAGAAGAACCTCGGCGTTCCTTGTCGGTGACT
TCGATAGGACAGGGTGGAGACGGTTCACGCGTGGGAATGCTTGCATGGTT
GCGGAAAGATCGGCAAGGGAGCGCACCGAGGAAGCAGTCGTCCCAGCCTC
TGGTGGAGGATCACGAGCGTATCGGCAGGCTGTATTCCATGATCGCGAGA
AAATGA
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