mRNA_F-serratus_M_contig9.20361.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20361.1
Unique NamemRNA_F-serratus_M_contig9.20361.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig9.20361.1 vs. uniprot
Match: A0A6H5KZC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.940e-22
Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 2 
Query:  518 IWRNRITRVIKNGTILRIVTKVETIVEEPILEACFVISHMVKIKRFRRLRSAKIIQYMIRERAALRQWSADVIGRATRCWIARVRLRRARIRRSILHHRGSLSRRPRGLPESKPKVFTAVSVTLSSREAPAREGRWWNAGP 940
            I R  I R ++N  IL I+  VET+V+E + EA F + +++ ++ F+  R+A+IIQ   R RA + + S  +I RATR W+ R  LRRARIRR I  +RGSLSRR  GL E+ P   T        RE P REGRWW++GP
Sbjct:    5 IRRAAILRAVRNRNILNIMVSVETLVQEQLDEAKFFVKNVIALRDFKTQRAARIIQGGFRHRAEVTRRSVAMIVRATRRWLMRGSLRRARIRRGIRRYRGSLSRRNLGLQETSPFALTVA------REFP-REGRWWDSGP 138
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BLAST of mRNA_F-serratus_M_contig9.20361.1 vs. uniprot
Match: D8LAZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.660e-20
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 2 
Query:  518 IWRNRITRVIKNGTILRIVTKVETIVEEPILEACFVISHMVKIKRFRRLRSAKIIQYMIRERAALRQWSADVIGRATRCWIARVRLRRARIRRSILHHRGSLSRRPRGLPESKPKVFTAVSVTLSSREAPAREGRWWNAG 937
            I R  I R ++N  IL I+   ET+V+E + EA F + +++ ++ F+  R+A+IIQ   R RA + + SA +I RATR W+ R  LRRARIRR I  +RGSLSRR  GL E+ P   T        RE P REGRWW++G
Sbjct:    5 IRRAAILRAVRNRNILSIMVSAETLVQEQLDEAKFFVKNVIALRDFKTQRAARIIQGGFRHRAEVTRRSAAMIVRATRRWLMRGSLRRARIRRGIRRYRGSLSRRNLGLKETSPFALTVA------REFP-REGRWWDSG 137
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZC1_9PHAE4.940e-2246.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAZ4_ECTSI4.660e-2045.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:656835..658185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_005850.1
Exons3
Model size942
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20361.1prot_F-serratus_M_contig9.20361.1Fucus serratus malepolypeptideF-serratus_M_contig9 656835..658043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932615.8003666-CDS-F-serratus_M_contig9:656834..6571941622932615.8003666-CDS-F-serratus_M_contig9:656834..657194Fucus serratus maleCDSF-serratus_M_contig9 656835..657194 -
1690964387.7140083-CDS-F-serratus_M_contig9:656834..6571941690964387.7140083-CDS-F-serratus_M_contig9:656834..657194Fucus serratus maleCDSF-serratus_M_contig9 656835..657194 -
1622932615.817929-CDS-F-serratus_M_contig9:657428..6577011622932615.817929-CDS-F-serratus_M_contig9:657428..657701Fucus serratus maleCDSF-serratus_M_contig9 657429..657701 -
1690964387.727457-CDS-F-serratus_M_contig9:657428..6577011690964387.727457-CDS-F-serratus_M_contig9:657428..657701Fucus serratus maleCDSF-serratus_M_contig9 657429..657701 -
1622932615.8330119-CDS-F-serratus_M_contig9:657878..6580431622932615.8330119-CDS-F-serratus_M_contig9:657878..658043Fucus serratus maleCDSF-serratus_M_contig9 657879..658043 -
1690964387.7407475-CDS-F-serratus_M_contig9:657878..6580431690964387.7407475-CDS-F-serratus_M_contig9:657878..658043Fucus serratus maleCDSF-serratus_M_contig9 657879..658043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932615.8457012-UTR-F-serratus_M_contig9:658043..6581851622932615.8457012-UTR-F-serratus_M_contig9:658043..658185Fucus serratus maleUTRF-serratus_M_contig9 658044..658185 -
1690964387.7516742-UTR-F-serratus_M_contig9:658043..6581851690964387.7516742-UTR-F-serratus_M_contig9:658043..658185Fucus serratus maleUTRF-serratus_M_contig9 658044..658185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20361.1

>prot_F-serratus_M_contig9.20361.1 ID=prot_F-serratus_M_contig9.20361.1|Name=mRNA_F-serratus_M_contig9.20361.1|organism=Fucus serratus male|type=polypeptide|length=266bp
MASAQLCEQFPSRWPREADSGGGSRMVTMAMRKRDAYKRVLLEREQEKER
RRIEESIQGLSAIEDQRRRARERKLDRERRREAYAELLERSTLTLQRCER
GRKGRRVATSRCQAAVRLSKWMARGIWRNRITRVIKNGTILRIVTKVETI
VEEPILEACFVISHMVKIKRFRRLRSAKIIQYMIRERAALRQWSADVIGR
ATRCWIARVRLRRARIRRSILHHRGSLSRRPRGLPESKPKVFTAVSVTLS
SREAPAREGRWWNAGP
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mRNA from alignment at F-serratus_M_contig9:656835..658185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20361.1 ID=mRNA_F-serratus_M_contig9.20361.1|Name=mRNA_F-serratus_M_contig9.20361.1|organism=Fucus serratus male|type=mRNA|length=1351bp|location=Sequence derived from alignment at F-serratus_M_contig9:656835..658185- (Fucus serratus male)
CGCATCCAACACCTTTCTACGGCAGCATACTCGTAGCGGCGTTATCACTG
CTAGTCGAACGCAACAAGCTGCGATCTAGCCTGTACGCTGGACTTTTGGG
TGAAGAAGCTCGCAGCGAAGCCGGATTCGCGACATATGATCTATGGCCTC
CGCTCAGCTTTGTGAACAGTTTCCAAGTAGATGGCCGCGAGAGGCAGATA
GTGGCGGGGGATCGAGAATGGTGACGATGGCAATGCGGAAGCGTGATGCG
TACAAGAGAGTTCTTCTGGAGAGGGAACAGGAGAAGGAACGCCGACGTAT
TGAAGAGGTGGGTAAGCTATGTATGGGTGAAGTCGAATGATTGGTGGCCA
CCCAGCGAAACCCTTCCATCGCCAACCATCAACCGTATTCTTCTCAACAT
AACACCGCCACAAGCAGCGCTACAGCATCGAAATAGCTTAGCTGCTGAAG
TAGGGTGCTCACGCTGCCGTACCATGCAATGCAGTCAATTCAAGGTCTCA
GCGCAATCGAGGATCAGCGAAGGAGGGCGCGAGAGCGCAAGCTGGATCGG
GAAAGGCGCAGGGAGGCCTACGCGGAACTGCTGGAGCGCAGCACGCTAAC
GTTGCAGCGCTGTGAGCGTGGGCGAAAGGGCAGGAGGGTGGCTACATCTC
GCTGCCAGGCAGCAGTGCGGCTGAGCAAGTGGATGGCTCGGGGAATATGG
AGGAACAGGATTACCAGAGTTATTAAAAACGGGACAATTCTTCGGATCGT
GACGAAGGTGCGGGGGGATCATAAACATAGATACCTATAGAAAAAAAATC
CTGCTGGGTGTCTCTTTTTTTTTTTTCTGGCAGGTCAGCCTCTCGAAGAA
TGAAGGCGGAAAGTTGTACTCGGTTTGTTTTCTGACTGCCAGGCTCGTGT
GTCGATAAGTTGGCGTCGCTCCGGCATCACTCTACCTTAGACCCAAAAAT
ATCGCCTACCGTTACCCTTGCTTTCGGTCTGTCTCGGTAAGGTGGAGACG
ATCGTTGAAGAGCCAATACTTGAGGCGTGTTTTGTAATCAGCCACATGGT
CAAGATCAAGCGATTCCGGAGGCTACGCTCCGCCAAAATCATCCAGTACA
TGATCCGCGAACGGGCCGCACTCCGCCAATGGTCGGCCGACGTCATAGGT
CGCGCAACGCGCTGCTGGATTGCCAGGGTCAGACTTCGGCGAGCGCGCAT
TCGGCGTAGCATTCTCCATCACCGCGGAAGCTTGTCTCGTCGACCTCGAG
GACTGCCCGAGTCAAAGCCCAAAGTGTTTACGGCCGTGAGCGTCACGCTC
TCGAGTCGGGAGGCGCCAGCACGAGAAGGACGCTGGTGGAACGCCGGGCC
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:656835..658185-

>mRNA_F-serratus_M_contig9.20361.1 ID=mRNA_F-serratus_M_contig9.20361.1|Name=mRNA_F-serratus_M_contig9.20361.1|organism=Fucus serratus male|type=CDS|length=1596bp|location=Sequence derived from alignment at F-serratus_M_contig9:656835..658185- (Fucus serratus male)
ATGGCCTCCGCTCAGCTTTGTGAACAGTTTCCAAGTAGATGGCCGCGAGA
GGCAGATAGTGGCGGGGGATCGAGAATGGTGACGATGGCAATGCGGAAGC
GTGATGCGTACAAGAGAGTTCTTCTGGAGAGGGAACAGGAGAAGGAACGC
CGACGTATTGAAGAGATGGCCTCCGCTCAGCTTTGTGAACAGTTTCCAAG
TAGATGGCCGCGAGAGGCAGATAGTGGCGGGGGATCGAGAATGGTGACGA
TGGCAATGCGGAAGCGTGATGCGTACAAGAGAGTTCTTCTGGAGAGGGAA
CAGGAGAAGGAACGCCGACGTATTGAAGAGTCAATTCAAGGTCTCAGCGC
AATCGAGGATCAGCGAAGGAGGGCGCGAGAGCGCAAGCTGGATCGGGAAA
GGCGCAGGGAGGCCTACGCGGAACTGCTGGAGCGCAGCACGCTAACGTTG
CAGCGCTGTGAGCGTGGGCGAAAGGGCAGGAGGGTGGCTACATCTCGCTG
CCAGGCAGCAGTGCGGCTGAGCAAGTGGATGGCTCGGGGAATATGGAGGA
ACAGGATTACCAGAGTTATTAAAAACGGGACAATTCTTCGGATCGTGACG
AAGTCAATTCAAGGTCTCAGCGCAATCGAGGATCAGCGAAGGAGGGCGCG
AGAGCGCAAGCTGGATCGGGAAAGGCGCAGGGAGGCCTACGCGGAACTGC
TGGAGCGCAGCACGCTAACGTTGCAGCGCTGTGAGCGTGGGCGAAAGGGC
AGGAGGGTGGCTACATCTCGCTGCCAGGCAGCAGTGCGGCTGAGCAAGTG
GATGGCTCGGGGAATATGGAGGAACAGGATTACCAGAGTTATTAAAAACG
GGACAATTCTTCGGATCGTGACGAAGGTGGAGACGATCGTTGAAGAGCCA
ATACTTGAGGCGTGTTTTGTAATCAGCCACATGGTCAAGATCAAGCGATT
CCGGAGGCTACGCTCCGCCAAAATCATCCAGTACATGATCCGCGAACGGG
CCGCACTCCGCCAATGGTCGGCCGACGTCATAGGTCGCGCAACGCGCTGC
TGGATTGCCAGGGTCAGACTTCGGCGAGCGCGCATTCGGCGTAGCATTCT
CCATCACCGCGGAAGCTTGTCTCGTCGACCTCGAGGACTGCCCGAGTCAA
AGCCCAAAGTGTTTACGGCCGTGAGCGTCACGCTCTCGAGTCGGGAGGCG
CCAGCACGAGAAGGACGCTGGTGGAACGCCGGGCCCGTGGAGACGATCGT
TGAAGAGCCAATACTTGAGGCGTGTTTTGTAATCAGCCACATGGTCAAGA
TCAAGCGATTCCGGAGGCTACGCTCCGCCAAAATCATCCAGTACATGATC
CGCGAACGGGCCGCACTCCGCCAATGGTCGGCCGACGTCATAGGTCGCGC
AACGCGCTGCTGGATTGCCAGGGTCAGACTTCGGCGAGCGCGCATTCGGC
GTAGCATTCTCCATCACCGCGGAAGCTTGTCTCGTCGACCTCGAGGACTG
CCCGAGTCAAAGCCCAAAGTGTTTACGGCCGTGAGCGTCACGCTCTCGAG
TCGGGAGGCGCCAGCACGAGAAGGACGCTGGTGGAACGCCGGGCCC
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