mRNA_F-serratus_M_contig9.20360.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20360.1
Unique NamemRNA_F-serratus_M_contig9.20360.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:653734..656687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1531
Cds size1530
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20360.1prot_F-serratus_M_contig9.20360.1Fucus serratus malepolypeptideF-serratus_M_contig9 653735..656687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932611.0869162-CDS-F-serratus_M_contig9:653734..6546311622932611.0869162-CDS-F-serratus_M_contig9:653734..654631Fucus serratus maleCDSF-serratus_M_contig9 653735..654631 -
1690964385.363839-CDS-F-serratus_M_contig9:653734..6546311690964385.363839-CDS-F-serratus_M_contig9:653734..654631Fucus serratus maleCDSF-serratus_M_contig9 653735..654631 -
1622932611.1109488-CDS-F-serratus_M_contig9:655067..6551701622932611.1109488-CDS-F-serratus_M_contig9:655067..655170Fucus serratus maleCDSF-serratus_M_contig9 655068..655170 -
1690964385.3732631-CDS-F-serratus_M_contig9:655067..6551701690964385.3732631-CDS-F-serratus_M_contig9:655067..655170Fucus serratus maleCDSF-serratus_M_contig9 655068..655170 -
1622932611.1294436-CDS-F-serratus_M_contig9:655555..6556411622932611.1294436-CDS-F-serratus_M_contig9:655555..655641Fucus serratus maleCDSF-serratus_M_contig9 655556..655641 -
1690964385.385517-CDS-F-serratus_M_contig9:655555..6556411690964385.385517-CDS-F-serratus_M_contig9:655555..655641Fucus serratus maleCDSF-serratus_M_contig9 655556..655641 -
1622932611.147051-CDS-F-serratus_M_contig9:655866..6559981622932611.147051-CDS-F-serratus_M_contig9:655866..655998Fucus serratus maleCDSF-serratus_M_contig9 655867..655998 -
1690964385.4038093-CDS-F-serratus_M_contig9:655866..6559981690964385.4038093-CDS-F-serratus_M_contig9:655866..655998Fucus serratus maleCDSF-serratus_M_contig9 655867..655998 -
1622932611.1608222-CDS-F-serratus_M_contig9:656375..6566871622932611.1608222-CDS-F-serratus_M_contig9:656375..656687Fucus serratus maleCDSF-serratus_M_contig9 656376..656687 -
1690964385.4181638-CDS-F-serratus_M_contig9:656375..6566871690964385.4181638-CDS-F-serratus_M_contig9:656375..656687Fucus serratus maleCDSF-serratus_M_contig9 656376..656687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20360.1

>prot_F-serratus_M_contig9.20360.1 ID=prot_F-serratus_M_contig9.20360.1|Name=mRNA_F-serratus_M_contig9.20360.1|organism=Fucus serratus male|type=polypeptide|length=510bp
ATARPNKGRININSDRFSTGAKMATEYERGAAKRRRALTLSLRETKEAAF
KHDVMMAQALTNIPLNSTEFKKLTVREKHLIRQIQFEAQNQKRRRVVEEK
RQQKEREKAQKVAVEAEQRAIKLELSRRREEEREQLRQAKLQEHLKKKEA
RDIAARKAAAAKRVQERHIREQAEAERCGAKVIFQERKTQRLDPMRRKRR
SEEEASQRSRREPTNTESTRTLGLIKKAAAAGRRRVLTPIETGNSEEGDR
KRQREGRLRWAGAPEVVVGVWRSKAVAKVRDGRRKLPYGSRVPALPVAPG
RKEMPEGNDRGDRKRIRRRPPREGEAAQVRVGKVGGGRFPGVLSVEDGTI
LEQLLPKPSGGQGLMNGGRGSVIISTSIGSTQGGVGLEGTGAEHTSVHRS
NKTRFHHGVGEGKTTTQGGERCPHGIPFEDNEGVTLETLYTVFPVPGLAA
GGGGDCGLGATSPLNGTSSGRSSYGSLSSKEREALSSGWSDSEEKVLSSS
SSVAAGSIEG
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mRNA from alignment at F-serratus_M_contig9:653734..656687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20360.1 ID=mRNA_F-serratus_M_contig9.20360.1|Name=mRNA_F-serratus_M_contig9.20360.1|organism=Fucus serratus male|type=mRNA|length=2954bp|location=Sequence derived from alignment at F-serratus_M_contig9:653734..656687- (Fucus serratus male)
GCAACGGCTCGGCCAAATAAAGGCCGCATAAATATCAATTCAGATAGATT
CAGTACGGGGGCCAAGATGGCGACGGAGTATGAGAGAGGGGCTGCCAAGC
GGAGACGGGCTTTGACGCTAAGTCTTCGCGAGACGAAAGAGGCGGCGTTC
AAGCACGATGTGATGATGGCGCAAGCGCTGACAAACATTCCACTCAACTC
GACGGAGTTCAAGAAACTGACCGTGCGGGAAAAGCACCTAATTCGACAGA
TACAGTTCGAGGCCCAGAATCAGAAGCGGAGACGTGTGGTTGAGGAGAAG
AGGCAGCAAAAGGTCTGCCCAGTCCGGCAATATCCCAATATCGACTCTAT
TAATGGTGCTGTTTCTATCCGAACTGGTACCTGGTAGAAGGAGCCCAGTT
TTTGTCGGCAGCGCTTCACGCGGTTTACGGGGCGCGAGATCACTTTTGAT
TTTTTGTGCGCGCATCTAGAGATTTGCCAAGGCGTTCTCTTCCAAAACTG
AGTGCGCGTTCGTCAGGGACCATCCATGTAGCTCAAACAGTTGCGCTTTG
TAAAGACTATGTCGGTGGGTCCGTAGAAGTCGCCACAGGTACTATACCGC
CCAGAAATAAGATTGCAGTTCGTAAGCTTCCAGAGCACGCGCTAGGCGAC
GCTAAATCTCGAAGCCGACGACGGGCGGGGTACGAGCAGGAACGCGAGAA
GGCTCAAAAGGTGGCGGTGGAGGCCGAGCAGCGAGCCATCAAGCTCGAGC
TCTCTCGTAGACGAGAGGAGGAACGCGAGCAACTACGCCAGGCAAAACTC
CAGGAACACCTAAAGAAAAAGGTATGCGCGTCTCTCTGCCGCATCACGCC
CGCGAGTCTTCACACTTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TAATGTTTGCGTTTTTCAGCGGGTTAGCGGCTGAGACGTGAGCGATGCCG
AAATCTTTTCTCCACCCATTTGCGCGACTGATCCCTACCGATGAGCACCT
CGAGCGCAACAAAACGCCTTCGGATCCCGCGCGCGCACGGAAAAAGGAGG
CCAGAGATATCGCCGCCAGGAAGGCGGCGGCTGCGAAGAGGGTTCAGGAA
CGGCACATCCGTGAGCAGGCCGAGGCCGAGCGGTGAGCTATCGAGCCCCA
CCGTACTTTCGCCAACCAAAACACACCGCGCTTCGACTGAAGGCCGTTTA
AGGGGATATTTGATGGAGTCATCTTATCGCGCTCCGGTAGCACCTGTCTC
CGCTGAAGAGCAACGAGCCAAGCCCCACTCCTTTCCCAGGCGCGTTTCGA
GTTTTTGCATCTCGCGAACTACACTCCCCCTCTCACATCGAACCAGGAGC
GTAACGAACACGTTACCACACAAGTTTTTAGTAAAAGTAAAGTTCTCTTA
ACCTATGGGCACACGTTTCCGTCCGCCAGTCACCGACAAAGCTGCTTTCG
CCCCCTCAAGTACCTGGAACGTTGCTGAAACCCTTCCGGCGAACAATAAA
CACGTGCTCGATGAAAGGTGCGGCGCAAAAGTAATCTTCCAGGAGCGAAA
AACTCAGCGCTTGGATCCGATGAGGCGAAAACGGCGCTCCGAAGAGGAGG
CGAGCCAAAGGAGTCGACGGGTAAGACCGCATTGTTGGGAAGTGGTGCTT
GCCCTTGTCCTGAGAGAGCGGATCTTGGCGTGAGCCCCCCGACAATATCG
ACGTCGTGCTGGATTGTACCGGGAAACTTCGCTCAAGTGATTCATTGAGA
CGAATGGTCGCGCCGTTTGGTGCGCTAGCCAGCGGGAGAGTAGAGCGCGC
CTCGTGAAATTTTCGTAAGGACCTGTACGAGAACAGCGGGAAGTGCTGGA
AAATTCCACTACTAATGCACTCGTTCTTTGGAGGATCCAAGGTGGACGCA
AGAGCTGTCGCGTCGCGTCGCTAATTTCTTGCATCTCCCGGCACCCCGTT
CACCGCCACCTGAACTGAGTTCGACACGCGAGCAACTTTGATGTAAGCAC
GCCATAACCCACACAACGCGCGAAAACAAAACCACTACTGAAAATAAATA
TGCCAGGAACCGACAAACACAGAGAGTACGCGGACACTGGGTCTGATCAA
GAAAGCGGCGGCGGCCGGGAGGCGCCGGGTCCTTACCCCCATCGAGACCG
GAAATTCCGAAGAGGGTGATAGGAAGCGTCAGCGAGAAGGACGGCTGAGG
TGGGCCGGAGCACCGGAGGTCGTTGTGGGTGTGTGGCGATCGAAGGCAGT
CGCCAAGGTGCGCGACGGGAGGCGTAAGCTGCCGTACGGATCTCGCGTAC
CGGCGCTGCCAGTGGCTCCGGGGCGGAAGGAAATGCCTGAGGGAAACGAC
CGCGGAGATAGGAAAAGGATCAGACGGCGACCTCCGAGGGAGGGGGAAGC
CGCGCAAGTACGCGTGGGAAAGGTGGGAGGGGGTCGTTTCCCCGGGGTCT
TGAGTGTGGAAGATGGCACGATTCTAGAGCAATTGTTGCCGAAGCCTTCA
GGGGGACAGGGATTGATGAACGGAGGGCGTGGCAGCGTCATCATTTCCAC
TTCAATCGGTTCGACCCAAGGGGGTGTTGGGTTGGAAGGGACAGGGGCGG
AACACACGTCTGTACATCGCTCGAACAAAACCCGTTTTCATCATGGGGTG
GGAGAAGGGAAGACTACCACCCAGGGAGGCGAGAGATGTCCCCACGGGAT
CCCCTTCGAGGACAATGAAGGGGTTACTCTGGAAACCCTGTATACAGTGT
TTCCGGTTCCAGGGTTGGCGGCCGGAGGAGGCGGCGACTGTGGCCTTGGC
GCGACGAGCCCACTTAACGGGACATCATCGGGGAGGAGCAGCTATGGCAG
TCTCAGTAGCAAAGAAAGAGAAGCCTTGAGCAGCGGTTGGAGCGACTCAG
AAGAAAAGGTGCTATCGTCATCCAGCAGTGTTGCCGCTGGCAGCATAGAG
GGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:653734..656687-

>mRNA_F-serratus_M_contig9.20360.1 ID=mRNA_F-serratus_M_contig9.20360.1|Name=mRNA_F-serratus_M_contig9.20360.1|organism=Fucus serratus male|type=CDS|length=3060bp|location=Sequence derived from alignment at F-serratus_M_contig9:653734..656687- (Fucus serratus male)
GCAACGGCTCGGCCAAATAAAGGCCGCATAAATATCAATTCAGATAGATT
CAGTACGGGGGCCAAGATGGCGACGGAGTATGAGAGAGGGGCTGCCAAGC
GGAGACGGGCTTTGACGCTAAGTCTTCGCGAGACGAAAGAGGCGGCGTTC
AAGCACGATGTGATGATGGCGCAAGCGCTGACAAACATTCCACTCAACTC
GACGGAGTTCAAGAAACTGACCGTGCGGGAAAAGCACCTAATTCGACAGA
TACAGTTCGAGGCCCAGAATCAGAAGCGGAGACGTGTGGTTGAGGAGAAG
AGGCAGCAAAAGGCAACGGCTCGGCCAAATAAAGGCCGCATAAATATCAA
TTCAGATAGATTCAGTACGGGGGCCAAGATGGCGACGGAGTATGAGAGAG
GGGCTGCCAAGCGGAGACGGGCTTTGACGCTAAGTCTTCGCGAGACGAAA
GAGGCGGCGTTCAAGCACGATGTGATGATGGCGCAAGCGCTGACAAACAT
TCCACTCAACTCGACGGAGTTCAAGAAACTGACCGTGCGGGAAAAGCACC
TAATTCGACAGATACAGTTCGAGGCCCAGAATCAGAAGCGGAGACGTGTG
GTTGAGGAGAAGAGGCAGCAAAAGGAACGCGAGAAGGCTCAAAAGGTGGC
GGTGGAGGCCGAGCAGCGAGCCATCAAGCTCGAGCTCTCTCGTAGACGAG
AGGAGGAACGCGAGCAACTACGCCAGGCAAAACTCCAGGAACACCTAAAG
AAAAAGGAACGCGAGAAGGCTCAAAAGGTGGCGGTGGAGGCCGAGCAGCG
AGCCATCAAGCTCGAGCTCTCTCGTAGACGAGAGGAGGAACGCGAGCAAC
TACGCCAGGCAAAACTCCAGGAACACCTAAAGAAAAAGGAGGCCAGAGAT
ATCGCCGCCAGGAAGGCGGCGGCTGCGAAGAGGGTTCAGGAACGGCACAT
CCGTGAGCAGGCCGAGGCCGAGCGGAGGCCAGAGATATCGCCGCCAGGAA
GGCGGCGGCTGCGAAGAGGGTTCAGGAACGGCACATCCGTGAGCAGGCCG
AGGCCGAGCGGTGCGGCGCAAAAGTAATCTTCCAGGAGCGAAAAACTCAG
CGCTTGGATCCGATGAGGCGAAAACGGCGCTCCGAAGAGGAGGCGAGCCA
AAGGAGTCGACGGGTGCGGCGCAAAAGTAATCTTCCAGGAGCGAAAAACT
CAGCGCTTGGATCCGATGAGGCGAAAACGGCGCTCCGAAGAGGAGGCGAG
CCAAAGGAGTCGACGGGAACCGACAAACACAGAGAGTACGCGGACACTGG
GTCTGATCAAGAAAGCGGCGGCGGCCGGGAGGCGCCGGGTCCTTACCCCC
ATCGAGACCGGAAATTCCGAAGAGGGTGATAGGAAGCGTCAGCGAGAAGG
ACGGCTGAGGTGGGCCGGAGCACCGGAGGTCGTTGTGGGTGTGTGGCGAT
CGAAGGCAGTCGCCAAGGTGCGCGACGGGAGGCGTAAGCTGCCGTACGGA
TCTCGCGTACCGGCGCTGCCAGTGGCTCCGGGGCGGAAGGAAATGCCTGA
GGGAAACGACCGCGGAGATAGGAAAAGGATCAGACGGCGACCTCCGAGGG
AGGGGGAAGCCGCGCAAGTACGCGTGGGAAAGGTGGGAGGGGGTCGTTTC
CCCGGGGTCTTGAGTGTGGAAGATGGCACGATTCTAGAGCAATTGTTGCC
GAAGCCTTCAGGGGGACAGGGATTGATGAACGGAGGGCGTGGCAGCGTCA
TCATTTCCACTTCAATCGGTTCGACCCAAGGGGGTGTTGGGTTGGAAGGG
ACAGGGGCGGAACACACGTCTGTACATCGCTCGAACAAAACCCGTTTTCA
TCATGGGGTGGGAGAAGGGAAGACTACCACCCAGGGAGGCGAGAGATGTC
CCCACGGGATCCCCTTCGAGGACAATGAAGGGGTTACTCTGGAAACCCTG
TATACAGTGTTTCCGGTTCCAGGGTTGGCGGCCGGAGGAGGCGGCGACTG
TGGCCTTGGCGCGACGAGCCCACTTAACGGGACATCATCGGGGAGGAGCA
GCTATGGCAGTCTCAGTAGCAAAGAAAGAGAAGCCTTGAGCAGCGGTTGG
AGCGACTCAGAAGAAAAGGTGCTATCGTCATCCAGCAGTGTTGCCGCTGG
CAGCATAGAGGGAGAACCGACAAACACAGAGAGTACGCGGACACTGGGTC
TGATCAAGAAAGCGGCGGCGGCCGGGAGGCGCCGGGTCCTTACCCCCATC
GAGACCGGAAATTCCGAAGAGGGTGATAGGAAGCGTCAGCGAGAAGGACG
GCTGAGGTGGGCCGGAGCACCGGAGGTCGTTGTGGGTGTGTGGCGATCGA
AGGCAGTCGCCAAGGTGCGCGACGGGAGGCGTAAGCTGCCGTACGGATCT
CGCGTACCGGCGCTGCCAGTGGCTCCGGGGCGGAAGGAAATGCCTGAGGG
AAACGACCGCGGAGATAGGAAAAGGATCAGACGGCGACCTCCGAGGGAGG
GGGAAGCCGCGCAAGTACGCGTGGGAAAGGTGGGAGGGGGTCGTTTCCCC
GGGGTCTTGAGTGTGGAAGATGGCACGATTCTAGAGCAATTGTTGCCGAA
GCCTTCAGGGGGACAGGGATTGATGAACGGAGGGCGTGGCAGCGTCATCA
TTTCCACTTCAATCGGTTCGACCCAAGGGGGTGTTGGGTTGGAAGGGACA
GGGGCGGAACACACGTCTGTACATCGCTCGAACAAAACCCGTTTTCATCA
TGGGGTGGGAGAAGGGAAGACTACCACCCAGGGAGGCGAGAGATGTCCCC
ACGGGATCCCCTTCGAGGACAATGAAGGGGTTACTCTGGAAACCCTGTAT
ACAGTGTTTCCGGTTCCAGGGTTGGCGGCCGGAGGAGGCGGCGACTGTGG
CCTTGGCGCGACGAGCCCACTTAACGGGACATCATCGGGGAGGAGCAGCT
ATGGCAGTCTCAGTAGCAAAGAAAGAGAAGCCTTGAGCAGCGGTTGGAGC
GACTCAGAAGAAAAGGTGCTATCGTCATCCAGCAGTGTTGCCGCTGGCAG
CATAGAGGGA
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