mRNA_F-serratus_M_contig9.20358.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20358.1
Unique NamemRNA_F-serratus_M_contig9.20358.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:635719..636525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20358.1prot_F-serratus_M_contig9.20358.1Fucus serratus malepolypeptideF-serratus_M_contig9 635924..636331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932611.4495993-UTR-F-serratus_M_contig9:635718..6359231622932611.4495993-UTR-F-serratus_M_contig9:635718..635923Fucus serratus maleUTRF-serratus_M_contig9 635719..635923 +
1690964385.5315993-UTR-F-serratus_M_contig9:635718..6359231690964385.5315993-UTR-F-serratus_M_contig9:635718..635923Fucus serratus maleUTRF-serratus_M_contig9 635719..635923 +
1622932611.484249-UTR-F-serratus_M_contig9:636331..6365251622932611.484249-UTR-F-serratus_M_contig9:636331..636525Fucus serratus maleUTRF-serratus_M_contig9 636332..636525 +
1690964385.5541794-UTR-F-serratus_M_contig9:636331..6365251690964385.5541794-UTR-F-serratus_M_contig9:636331..636525Fucus serratus maleUTRF-serratus_M_contig9 636332..636525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932611.4692507-CDS-F-serratus_M_contig9:635923..6363311622932611.4692507-CDS-F-serratus_M_contig9:635923..636331Fucus serratus maleCDSF-serratus_M_contig9 635924..636331 +
1690964385.5432782-CDS-F-serratus_M_contig9:635923..6363311690964385.5432782-CDS-F-serratus_M_contig9:635923..636331Fucus serratus maleCDSF-serratus_M_contig9 635924..636331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20358.1

>prot_F-serratus_M_contig9.20358.1 ID=prot_F-serratus_M_contig9.20358.1|Name=mRNA_F-serratus_M_contig9.20358.1|organism=Fucus serratus male|type=polypeptide|length=136bp
MVRRFGGKKLGVRDATPFTSESTGRRGLFALYSFVPPLFLRPPPEERCSV
CPLLGVSTIIELPFPPFLSLTQLFLPAEEAVPTAMLSPLRFFRLFEETSQ
TLREPADAVPVLKRGWSFWSGFEFAFFDIGSAGAC*
back to top

mRNA from alignment at F-serratus_M_contig9:635719..636525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20358.1 ID=mRNA_F-serratus_M_contig9.20358.1|Name=mRNA_F-serratus_M_contig9.20358.1|organism=Fucus serratus male|type=mRNA|length=807bp|location=Sequence derived from alignment at F-serratus_M_contig9:635719..636525+ (Fucus serratus male)
GCCGTTCGTTGCTCTTTTTTGGTTCAAGCCTGCATCTCTGGTGATTCCGT
TGAGCGATGCCTTTGCATCACGGTCAGCCAAGCCGTTCGTTGCTCTTTTT
CGTTTCAAGCCTGTTTTGCCACCGCCGCCACCAGCACCACCCAACGGGCC
CACATAATTGGTCCCGGTTTTTCCAAGAGTATCGATAGGCGGTCGTGAAT
CAAGGATGGTGCGCCGTTTCGGAGGGAAAAAGTTGGGTGTACGAGATGCC
ACGCCATTCACCTCTGAATCCACAGGCCGACGAGGCTTGTTTGCTTTATA
TTCGTTCGTGCCGCCGCTATTTCTGCGACCACCACCAGAGGAACGATGTT
CGGTATGTCCGCTGCTCGGCGTTTCCACAATCATAGAGTTACCGTTCCCA
CCCTTCCTGAGTCTTACCCAGTTATTTCTACCCGCAGAAGAAGCTGTACC
AACCGCGATGCTGTCACCGCTGCGCTTCTTTCGCTTATTCGAAGAGACAT
CACAAACGCTGAGAGAACCAGCTGATGCGGTCCCTGTGCTAAAGCGAGGG
TGGTCCTTCTGGAGTGGCTTCGAATTCGCTTTTTTCGACATCGGCAGCGC
TGGTGCTTGTTGAGAGCCCCGATCACCCAGCAGTAGGGTCGTCCACCTGC
TTGTGTCGGTCCCTACGTCCGAACAACCATCCCTAGAAACAATAACATCC
CTTTTCTCTCGCTCATGGTAACAATTTTAGTAGGATCTACGCTGCATTGG
AATGCGGTGTACTTGGGAGGATCTACGCTGCATTGGCATTTGAACGCTCC
CAGCCCT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig9:635719..636525+

>mRNA_F-serratus_M_contig9.20358.1 ID=mRNA_F-serratus_M_contig9.20358.1|Name=mRNA_F-serratus_M_contig9.20358.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig9:635719..636525+ (Fucus serratus male)
ATGGTGCGCCGTTTCGGAGGGAAAAAGTTGGGTGTACGAGATGCCACGCC
ATTCACCTCTGAATCCACAGGCCGACGAGGCTTGTTTGCTTTATATTCGT
TCGTGCCGCCGCTATTTCTGCGACCACCACCAGAGGAACGATGTTCGGTA
TGTCCGCTGCTCGGCGTTTCCACAATCATAGAGTTACCGTTCCCACCCTT
CCTGAGTCTTACCCAGTTATTTCTACCCGCAGAAGAAGCTGTACCAACCG
CGATGCTGTCACCGCTGCGCTTCTTTCGCTTATTCGAAGAGACATCACAA
ACGCTGAGAGAACCAGCTGATGCGGTCCCTGTGCTAAAGCGAGGGTGGTC
CTTCTGGAGTGGCTTCGAATTCGCTTTTTTCGACATCGGCAGCGCTGGTG
CTTGTTGAATGGTGCGCCGTTTCGGAGGGAAAAAGTTGGGTGTACGAGAT
GCCACGCCATTCACCTCTGAATCCACAGGCCGACGAGGCTTGTTTGCTTT
ATATTCGTTCGTGCCGCCGCTATTTCTGCGACCACCACCAGAGGAACGAT
GTTCGGTATGTCCGCTGCTCGGCGTTTCCACAATCATAGAGTTACCGTTC
CCACCCTTCCTGAGTCTTACCCAGTTATTTCTACCCGCAGAAGAAGCTGT
ACCAACCGCGATGCTGTCACCGCTGCGCTTCTTTCGCTTATTCGAAGAGA
CATCACAAACGCTGAGAGAACCAGCTGATGCGGTCCCTGTGCTAAAGCGA
GGGTGGTCCTTCTGGAGTGGCTTCGAATTCGCTTTTTTCGACATCGGCAG
CGCTGGTGCTTGTTGA
back to top