mRNA_F-serratus_M_contig9.20356.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI) HSP 1 Score: 191 bits (484), Expect = 9.870e-58 Identity = 111/191 (58.12%), Postives = 140/191 (73.30%), Query Frame = 1
Query: 169 IQLLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQWEVLKELVPTGASQVRLDLDLRRGGASRSHGGSRNKKSKSSETFKANKPFTLKEKEEQQKANLAKAEAKMKKRQ-QGLNVKR 738
+QLLKDA V SYEPRV++HLV RMR YT E+L DARDYADHAGR + + DVRLA RKKQ+AL+AGP +RED I A+EVNRIPLP IPD+FG+RLPP ++Q TLP+LQWE E P +D+D + + S G+RNKK+K++ + KP TLKEK+EQ++AN AKAEAK +R+ Q N KR
Sbjct: 1 MQLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAE-PPVHDEAGEMDVDPEQAPSPLS--GNRNKKAKTTPGLETKKPLTLKEKKEQEEANRAKAEAKAARRRLQAQNAKR 188
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: A0A485L1Y3_9STRA (Aste57867_14710 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1Y3_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.660e-18 Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 175 LLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTT 480
+L V YEPRV+T L+ + YT+E+L DA++Y+ +A + I DD+RLAA + A +RE ++ LAE+ N IPLPPIP E+G+RLPP E Q T
Sbjct: 56 ILDSMGVDKYEPRVITQLLEFIHRYTSEVLVDAQEYSSYANKSSIDADDIRLAAMSRLNHNYAQMPSRELMMELAEKRNTIPLPPIPSEYGVRLPPVEHQLT 157
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: F4P4F0_BATDJ (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4P4F0_BATDJ) HSP 1 Score: 86.7 bits (213), Expect = 5.520e-18 Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 151 RDHQSMIQLLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQ 495
RD + + +L+ A V YEPR++ L+ Y ++L D++ +ADHAG + +DD+RLA + GP +RE ++ LAE+ N IPLP IP++FGLRLPP T + Q
Sbjct: 2 RDAKLISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 116
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: T0Q747_SAPDV (Transcription initiation factor TFIID subunit 9B n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q747_SAPDV) HSP 1 Score: 88.6 bits (218), Expect = 7.890e-18 Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 175 LLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQ 474
+L+ V YEPRV+T L+ + YT E+L DA++++ +A + +I DDVRLAA + A RE ++ LAE+ N IPLP IP+E+G+RLPPPE Q
Sbjct: 43 ILESMGVDKYEPRVVTQLLEFVHRYTTEVLVDAQEFSQYANKAEIDADDVRLAAMARLNHTYAQMPARELMMELAEKRNAIPLPLIPNEYGVRLPPPELQ 142
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: A0A1S8VMC7_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VMC7_9FUNG) HSP 1 Score: 87.4 bits (215), Expect = 3.280e-17 Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 151 RDHQSMIQLLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQ 495
RD + + +L+ A V YEPR++ L+ Y ++L D++ +ADHAG ++ +DDVRLA + GP +RE ++ LAE+ N IPLP IP++FGLRLPP T + Q
Sbjct: 16 RDAKLVSLILQAADVDDYEPRLIPQLLEFAHRYVQDVLQDSQVFADHAGHKELEVDDVRLAIESRVAHSFTGPPSRETMMELAEKKNSIPLPLIPEKFGLRLPPERNTLTKANFQ 130
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: A0A1V9ZX43_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX43_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.090e-17 Identity = 42/100 (42.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 175 LLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQ 474
+L+ V+ YEPRV++ L+ + YT +L DA++Y+ +A + ++ DD+RLAA + + RE ++ LAE+ N IPLPPIP+E+G+RLP PE+Q
Sbjct: 45 ILESMGVVKYEPRVISQLLEFVHRYTTNVLVDAQEYSHYASKPEMDQDDIRLAAMSRLHHTYSQMPPRELMMELAEKRNAIPLPPIPNEYGVRLPSPEYQ 144
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: UPI000644E8C7 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E8C7) HSP 1 Score: 89.0 bits (219), Expect = 5.540e-17 Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 145 EERDHQSMIQLLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQWEVLK 510
E RD + + +LK V S++PRV+ L+ M Y E+L D+ Y++H+GR +I + D+RL+ + + P RE ++ ++EE NRIPLPPIP +FG+ LPP E+ P+ Q + K
Sbjct: 170 EPRDSRVIKNILKTMGVQSHDPRVVNQLLEFMFKYVYEVLQDSIAYSEHSGRSEIDISDIRLSIQSRVNFSFTQPPPRELLLSISEEKNRIPLPPIPQKFGVLLPPDEYCLNYPNYQVDPAK 291
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: A0A177WG97_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WG97_BATDL) HSP 1 Score: 86.7 bits (213), Expect = 6.740e-17 Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 151 RDHQSMIQLLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQ 495
RD + + +L+ A V YEPR++ L+ Y ++L D++ +ADHAG + +DD+RLA + GP +RE ++ LAE+ N IPLP IP++FGLRLPP T + Q
Sbjct: 16 RDAKLISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 130
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: A0A151Z337_9MYCE (Transcription initiation factor TFIID subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z337_9MYCE) HSP 1 Score: 88.2 bits (217), Expect = 7.070e-17 Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 145 EERDHQSMIQLLKDAHVLSYEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQWEVLKELV 519
E RD + + +L V SY+PRV+ L+ M Y +IL D++ YA+H+G+ ++ + DVRL+ + + + P RE V+ +AEE N+IPLP IP++FG+ LPP E+ T P+ Q K LV
Sbjct: 61 EPRDARIIKSILNTMGVQSYDPRVVNQLLEFMTKYVFDILQDSQVYAEHSGKTEMDVSDVRLSIQSRVNHTSTPP-PREMVVGIAEEQNKIPLPAIPNKFGVFLPPDEYCITNPNYQIVPNKPLV 184
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Match: W4FUK8_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FUK8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.700e-17 Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 202 YEPRVLTHLVHRMRAYTAEILADARDYADHAGRVKISLDDVRLAARKKQEALAAGPLTREDVIWLAEEVNRIPLPPIPDEFGLRLPPPEFQTTLPDLQW---EVLKELVPTGASQVRLDL 552
YEPRV+ L+ + YT+EIL DA++Y+ A + I DD+RLAA + + A +RE ++ LAE+ N +PLPPIP E+G+RLPP E Q T +++ +L P A+ V L L
Sbjct: 69 YEPRVIPQLLEFVHRYTSEILVDAQEYSTFANKPAIDADDIRLAAASRLKHTYAQIPSRELMMELAEKRNALPLPPIPSEYGVRLPPVEHQLTAENIRLYPNHHPSQLQPPTATTVPLPL 188 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig9.20356.1 >prot_F-serratus_M_contig9.20356.1 ID=prot_F-serratus_M_contig9.20356.1|Name=mRNA_F-serratus_M_contig9.20356.1|organism=Fucus serratus male|type=polypeptide|length=247bp HEGVTRYARSPSHLELGLSTKLDPMPSNSTSKLPPNPRAVENRMKAALEEback to top mRNA from alignment at F-serratus_M_contig9:626744..630479+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig9.20356.1 ID=mRNA_F-serratus_M_contig9.20356.1|Name=mRNA_F-serratus_M_contig9.20356.1|organism=Fucus serratus male|type=mRNA|length=3736bp|location=Sequence derived from alignment at F-serratus_M_contig9:626744..630479+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig9:626744..630479+ >mRNA_F-serratus_M_contig9.20356.1 ID=mRNA_F-serratus_M_contig9.20356.1|Name=mRNA_F-serratus_M_contig9.20356.1|organism=Fucus serratus male|type=CDS|length=1482bp|location=Sequence derived from alignment at F-serratus_M_contig9:626744..630479+ (Fucus serratus male)back to top |