mRNA_F-serratus_M_contig9.20351.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20351.1
Unique NamemRNA_F-serratus_M_contig9.20351.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:528017..528342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20351.1prot_F-serratus_M_contig9.20351.1Fucus serratus malepolypeptideF-serratus_M_contig9 528080..528325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932610.9073129-UTR-F-serratus_M_contig9:528016..5280791622932610.9073129-UTR-F-serratus_M_contig9:528016..528079Fucus serratus maleUTRF-serratus_M_contig9 528017..528079 +
1690964385.3184469-UTR-F-serratus_M_contig9:528016..5280791690964385.3184469-UTR-F-serratus_M_contig9:528016..528079Fucus serratus maleUTRF-serratus_M_contig9 528017..528079 +
1622932611.003424-UTR-F-serratus_M_contig9:528325..5283421622932611.003424-UTR-F-serratus_M_contig9:528325..528342Fucus serratus maleUTRF-serratus_M_contig9 528326..528342 +
1690964385.354864-UTR-F-serratus_M_contig9:528325..5283421690964385.354864-UTR-F-serratus_M_contig9:528325..528342Fucus serratus maleUTRF-serratus_M_contig9 528326..528342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932610.9225438-CDS-F-serratus_M_contig9:528079..5281241622932610.9225438-CDS-F-serratus_M_contig9:528079..528124Fucus serratus maleCDSF-serratus_M_contig9 528080..528124 +
1690964385.3341255-CDS-F-serratus_M_contig9:528079..5281241690964385.3341255-CDS-F-serratus_M_contig9:528079..528124Fucus serratus maleCDSF-serratus_M_contig9 528080..528124 +
1622932610.9802046-CDS-F-serratus_M_contig9:528169..5283251622932610.9802046-CDS-F-serratus_M_contig9:528169..528325Fucus serratus maleCDSF-serratus_M_contig9 528170..528325 +
1690964385.3450117-CDS-F-serratus_M_contig9:528169..5283251690964385.3450117-CDS-F-serratus_M_contig9:528169..528325Fucus serratus maleCDSF-serratus_M_contig9 528170..528325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20351.1

>prot_F-serratus_M_contig9.20351.1 ID=prot_F-serratus_M_contig9.20351.1|Name=mRNA_F-serratus_M_contig9.20351.1|organism=Fucus serratus male|type=polypeptide|length=67bp
MCDNPTRKQHVRGQDVTRKYNKRLIRVNKFSGSIGSPCSLVTQATSTAKF
SVQSIGTNGTLEVTSV*
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mRNA from alignment at F-serratus_M_contig9:528017..528342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20351.1 ID=mRNA_F-serratus_M_contig9.20351.1|Name=mRNA_F-serratus_M_contig9.20351.1|organism=Fucus serratus male|type=mRNA|length=326bp|location=Sequence derived from alignment at F-serratus_M_contig9:528017..528342+ (Fucus serratus male)
CTAGCCTGCAGTCAATGCGTCGAAAGATTTGCTCCTTTTCAATGTCGGCA
CACTTTTGAAATAATGTGTGATAATCCGACGAGAAAACAACATGTCAGAG
GACAGGATGAAATGAACCGTGCCGAGGACATGGTAAAAACACGGAGAATA
TTCGTGACTCGAAAGTACAACAAGCGACTAATACGAGTGAATAAGTTCAG
CGGAAGTATAGGCTCTCCCTGTTCGCTCGTTACTCAAGCTACAAGTACTG
CAAAATTCAGTGTGCAGTCTATAGGAACTAACGGCACGCTTGAAGTTACA
TCGGTCTAGACTGAATTCCGAAACAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:528017..528342+

>mRNA_F-serratus_M_contig9.20351.1 ID=mRNA_F-serratus_M_contig9.20351.1|Name=mRNA_F-serratus_M_contig9.20351.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig9:528017..528342+ (Fucus serratus male)
ATGTGTGATAATCCGACGAGAAAACAACATGTCAGAGGACAGGATATGTG
TGATAATCCGACGAGAAAACAACATGTCAGAGGACAGGATGTGACTCGAA
AGTACAACAAGCGACTAATACGAGTGAATAAGTTCAGCGGAAGTATAGGC
TCTCCCTGTTCGCTCGTTACTCAAGCTACAAGTACTGCAAAATTCAGTGT
GCAGTCTATAGGAACTAACGGCACGCTTGAAGTTACATCGGTCTAGGTGA
CTCGAAAGTACAACAAGCGACTAATACGAGTGAATAAGTTCAGCGGAAGT
ATAGGCTCTCCCTGTTCGCTCGTTACTCAAGCTACAAGTACTGCAAAATT
CAGTGTGCAGTCTATAGGAACTAACGGCACGCTTGAAGTTACATCGGTCT
AG
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