mRNA_F-serratus_M_contig9.20342.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: D8LAY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI) HSP 1 Score: 369 bits (948), Expect = 2.190e-117 Identity = 186/277 (67.15%), Postives = 218/277 (78.70%), Query Frame = 1
Query: 766 RGFGATWWALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEVTKRLVRNWGRGRGSHGLGKFSGVREGGAVYYGALDGGRADFACTSSCSHGHKRCEVCHLLTRDKPPS-APASSSRRKRVD 1593
R FG W + F HEVWL LQH N+LLNPLCQRLDR YGI LL+RRLYWVIA VLAAYW+REVLSML+A+PY SPLT KM+A+S++YHVGKI+L+SLDA R WSPT+GIMRLLMDHWH+SSF D+LL KR++LQGFDT THAL+VRDM+RWDE ES+ GL R LI V+VVWA+HA+ N++T+ STATLVVEV K LV NWG G + R+ G +GALDGGRA+F CT+SCSHGHK CEVCHLLTRDKP + AP RKRVD
Sbjct: 157 RRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDE-ESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGK----RPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A6H5JPB7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE) HSP 1 Score: 364 bits (934), Expect = 3.670e-115 Identity = 178/266 (66.92%), Postives = 210/266 (78.95%), Query Frame = 1
Query: 766 RGFGATWWALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEVTKRLVRNWGRGRGSHGLGKFSGVREGGAVYYGALDGGRADFACTSSCSHGHKRCEVCHLLTRDKPPSAP 1563
R FG W + FVHEVWL LQH N+LLNPLCQRLDR YG+ LL+RRLYWVIA VL+AYW+REVLSML+A+PY SPLT KM+A S++YHVGKI+L+S DA R WSPT+GIMRLLMDHWH+SSF D LL KR++LQGFDT THAL+VRDM+RWDE ES+G GL + LI V+VVWA+HA+ N++TK STATLVVEV K LV NWG G + R+ G +G LDGGRA+F CT+SCSHGHK CEVCHLLTRDKP + P
Sbjct: 157 RRFGPAWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRRLYWVIAGVLSAYWSREVLSMLIASPYASPLTLKMVATSSLYHVGKIILISRDAQRRWSPTMGIMRLLMDHWHMSSFKDALLCVKRMSLQGFDTATHALIVRDMVRWDE-ESAGRTHGLHQKLIIVSVVWAMHAIANLVTKVSTATLVVEVAKSLVGNWGSSSGK----RPPSWRQRGGGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKPAALP 417
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A836C6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA) HSP 1 Score: 283 bits (725), Expect = 6.310e-86 Identity = 146/260 (56.15%), Postives = 180/260 (69.23%), Query Frame = 1
Query: 796 LIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQG-------FDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEVTKRLVRNWGRGRGSHGLGKFSGVREGGAVYYGALDGGRADFACTSSCSHGHKRCEVCHLLTRDKPP 1554
L+ VHEVW+ LQH NVLLNPLCQRLDRGYGI+LLK+R YWVIA VL AYW RE+LSML A PYT+PLT MIAVS VYH+GKI+LVS+DA RGWSPTLGIMRLL+DHWHL S DL++SAKR ALQ FD++TH L+VRD++ S L R ++ ++VWA+HA+ N++T STATL+V + K ++ + + GG+ ALDGGR + C C HGH +C VCHLLTRD PP
Sbjct: 43 LLLVHEVWVMLQHLNVLLNPLCQRLDRGYGISLLKKRQYWVIAGVLGAYWLREILSMLAALPYTAPLTSNMIAVSCVYHLGKIILVSIDAQRGWSPTLGIMRLLIDHWHLRSLADLMISAKRFALQARQLSHCAFDSLTHVLIVRDLVSGRMTRSVASA-ELERLVVITSLVWALHALANVVTGLSTATLMVRLAKAILEVFASHPKATSTASQHNGHSGGSAL--ALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMPP 299
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A7S4KNY6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH) HSP 1 Score: 211 bits (536), Expect = 4.840e-57 Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 1
Query: 781 TWWALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEVTKRLV 1371
TW ++F HEVW+ +QH NVLLNP QRLDR YGIALL++R YWVIA VL+AYWAREVLSM+L Y S T MI +S +YH+ KI LVSLDA+R +SP LGIM LL+D WHL S D L++ KRV LQGFDT TH +V DM+ D++ L +F+A VW VHA+ +TKKSTATL VE K ++
Sbjct: 104 TW---ILFAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKICLVSLDAARKFSPRLGIMSLLIDQWHLDSLVDALITLKRVLLQGFDTATHCKIVLDMISKDKE--------LLSFAVFIAAVWFVHALACQVTKKSTATLFVETFKAVI 289
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A812Q1W1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO) HSP 1 Score: 186 bits (471), Expect = 1.330e-47 Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 1
Query: 790 ALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVE 1353
A L+ +HE W+ LQH NVLLNP CQRLDR YGI++L++ +WVIA+VL YWAREV SMLL PY S + + VSA+YH K+ + LDA R WSPTLGIM+LL+DHWH + L+S R LQG+DT+ H +V D++ G G G L + +VW +HAV N +++STATLVVE
Sbjct: 54 AALLLLHEAWVTLQHGNVLLNPFCQRLDRNYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIH-----HGGLGTGYVWWLHVLFLVWLLHAVLNQTSQQSTATLVVE 236
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A812V2L4_9DINO (CER3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO) HSP 1 Score: 187 bits (476), Expect = 6.530e-46 Identity = 95/193 (49.22%), Postives = 130/193 (67.36%), Query Frame = 1
Query: 793 LLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEVTKRLV 1371
L + +HE W+ LQH NVLLNP CQRLDR YGI++L++ +WVIA+VL YWAREV SMLL PY + + + VS +YH K+ + LDA R WSPTLGIM+LL+DHWH + L+S R +LQG+DT+ H +VRD++ G G G + L + +VW +HAV N ++++STATLVVE + L+
Sbjct: 52 LALLLHEAWVTLQHGNVLLNPFCQRLDRRYGISMLRKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSTIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFQTLGTQLVSLLRFSLQGYDTMVHVFIVRDLIH-----HGGLGTGYVKWLHILFLVWLLHAVLNQVSQQSTATLVVESWRYLL 239
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A812Z067_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO) HSP 1 Score: 181 bits (459), Expect = 3.010e-45 Identity = 93/187 (49.73%), Postives = 125/187 (66.84%), Query Frame = 1
Query: 793 LLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVE 1353
L++ +HE W+ LQH NVLLNP CQRLDR YGI++L++ +WVIA+VL YWAREV SMLL PY + + + VSA+YH K+ + LDA R WSPTLGIM+LL+DHWH + L+S R LQG+DT+ H +V D++ G G L + +VW +HAV N ++++STATLVVE
Sbjct: 57 LMLLLHEAWVTLQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFYTLGTQLVSLLRFLLQGYDTMVHVFIVSDLIH-----HGGLGTSYVWWLHVLFLVWLLHAVLNQVSQQSTATLVVE 238
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A1Q9D0R3_SYMMI (Caroteno-chlorophyll a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI) HSP 1 Score: 182 bits (461), Expect = 3.870e-44 Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 1
Query: 790 ALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVE 1353
A L+ +HE W+ +QH NVLLNP CQRLDR YGI++L++ +WVIA+VL YWAREV SMLL PY S + + VSA+YH K+ + LDA R WSPTLGIM+LL+DHWH + L+S R LQG+DT+ H +V D++ G G G L + +VW +HAV N +++STA LVVE
Sbjct: 54 AALLLLHEAWVTMQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIH-----HGGLGTGYVWWLHVLFLVWLLHAVLNQTSQQSTAKLVVE 236
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A7S3LJ98_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ98_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.760e-33 Identity = 87/209 (41.63%), Postives = 124/209 (59.33%), Query Frame = 1
Query: 784 WWALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPY---TSP----LTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLG----LRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEVTKRLVRN 1377
W LL+F HE W+ LQH NVL NPLCQRLDR YGIALLK +W IA L+AYW RE LSM L P+ ++P T ++ +S +YH K V DA + SPT GIMR+++D ++L + +++L+A R+ LQGFDT H L++RD+L S+ + + L + +W +HA N + STA+++V+ L N
Sbjct: 15 WLFLLLFCHEYWVYLQHCNVLANPLCQRLDRQYGIALLKSNQHWAIAGTLSAYWCRESLSMFLCLPFLQRSNPGAISTTQYLVLISLIYHTIKSRGVRRDALQRQSPTYGIMRVVIDKFYLHTRQEVVLTAVRLFLQGFDTWIHFLILRDLLLDSSSVSASASVSTPPIITTWLHAIFAIWVLHAAMNQYFRCSTASVMVQAWYSLTAN 223
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Match: A0A6U3TV35_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TV35_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.040e-33 Identity = 79/192 (41.15%), Postives = 118/192 (61.46%), Query Frame = 1
Query: 781 TWWALLIFVHEVWLCLQHTNVLLNPLCQRLDRGYGIALLKRRLYWVIATVLAAYWAREVLSMLLAAPYTSPLTCKMIAVSAVYHVGKILLVSLDASRGWSPTLGIMRLLMDHWHLSSFNDLLLSAKRVALQGFDTVTHALVVRDMLRWDEDESSGPGLGLRRTLIFVAVVWAVHAVGNIMTKKSTATLVVEV 1356
+W A L+ HE W+ LQH+NVL NPLCQ LDR YGIALL+ +W IA L+AYW RE + M L P+ T ++ S VYH K V LDA R +SP GIMR+++D +HL + + +L+A R+ LQG DT HA++++ + + SS + + + +++ +W HA N + STAT++V++
Sbjct: 61 SWLATLLLAHEYWVYLQHSNVLANPLCQHLDRQYGIALLRSNQHWAIAGTLSAYWCRESMCMFLCTPFLPRHTQYLVLYSLVYHTIKSRGVRLDAIRRYSPQFGIMRIVIDKFHLHTTAEAILTAVRLLLQGGDTFIHAMIIKGLFVY---LSSTSEMSMLPMIHWLSFIWITHAAMNQYLRCSTATIMVQL 249 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig9.20342.1 >prot_F-serratus_M_contig9.20342.1 ID=prot_F-serratus_M_contig9.20342.1|Name=mRNA_F-serratus_M_contig9.20342.1|organism=Fucus serratus male|type=polypeptide|length=469bp MNPTTLQSHHHLPLLLAFRVLCVILMVGRSGTSAPVDDATTIGVAPSADRback to top mRNA from alignment at F-serratus_M_contig9:125930..133299- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig9.20342.1 ID=mRNA_F-serratus_M_contig9.20342.1|Name=mRNA_F-serratus_M_contig9.20342.1|organism=Fucus serratus male|type=mRNA|length=7370bp|location=Sequence derived from alignment at F-serratus_M_contig9:125930..133299- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig9:125930..133299- >mRNA_F-serratus_M_contig9.20342.1 ID=mRNA_F-serratus_M_contig9.20342.1|Name=mRNA_F-serratus_M_contig9.20342.1|organism=Fucus serratus male|type=CDS|length=2814bp|location=Sequence derived from alignment at F-serratus_M_contig9:125930..133299- (Fucus serratus male)back to top |