mRNA_F-serratus_M_contig9.20341.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig9.20341.1
Unique NamemRNA_F-serratus_M_contig9.20341.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:124089..124940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size854
Cds size852
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932611.2698772-CDS-F-serratus_M_contig9:124088..1249401622932611.2698772-CDS-F-serratus_M_contig9:124088..124940Fucus serratus maleCDSF-serratus_M_contig9 124089..124940 +
1690964385.4481473-CDS-F-serratus_M_contig9:124088..1249401690964385.4481473-CDS-F-serratus_M_contig9:124088..124940Fucus serratus maleCDSF-serratus_M_contig9 124089..124940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20341.1prot_F-serratus_M_contig9.20341.1Fucus serratus malepolypeptideF-serratus_M_contig9 124089..124940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig9.20341.1

>prot_F-serratus_M_contig9.20341.1 ID=prot_F-serratus_M_contig9.20341.1|Name=mRNA_F-serratus_M_contig9.20341.1|organism=Fucus serratus male|type=polypeptide|length=284bp
GYNDDWVSTTRAGVFDEVTAQKGGEEAWTKAYHDRQKTGTAVEAGLARAR
TSDLGRSQEESVKIYANLRASAQNGTWQTALGIITHMKNNGLTPNVRMVT
MAITACSKGRRWEEALMLLRDMPRMGTEPNVVTYNACIHACARGGQWEIS
VELLKEMAREGISPDVTSYSAAIGGCANAKMFRRAIRLLREMPTKGINPG
VVAYNNAVRSCRNSQQWELAVDLLREMIAIGVEPNTITFSMAIAACANNR
RLGDALDLLAEMRGLGMNPDSNCWKAVMRALGGG
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mRNA from alignment at F-serratus_M_contig9:124089..124940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig9.20341.1 ID=mRNA_F-serratus_M_contig9.20341.1|Name=mRNA_F-serratus_M_contig9.20341.1|organism=Fucus serratus male|type=mRNA|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig9:124089..124940+ (Fucus serratus male)
GGTTACAACGACGATTGGGTTTCAACCACTCGCGCAGGCGTCTTCGACGA
GGTCACGGCACAGAAAGGAGGGGAGGAGGCATGGACAAAGGCCTATCATG
ACCGGCAGAAGACTGGAACGGCGGTTGAAGCGGGTCTCGCTAGAGCACGG
ACATCGGACCTGGGCAGGTCACAAGAAGAGAGCGTGAAGATCTACGCGAA
CTTGCGCGCGTCGGCTCAGAACGGAACGTGGCAGACTGCGCTCGGCATCA
TCACGCACATGAAGAACAACGGGTTGACGCCCAACGTTCGGATGGTAACC
ATGGCAATAACCGCCTGTTCGAAGGGCCGTAGGTGGGAGGAGGCTCTAAT
GTTGCTGAGGGACATGCCTCGGATGGGGACCGAGCCCAACGTCGTGACGT
ACAATGCCTGCATACATGCGTGCGCGAGGGGGGGGCAGTGGGAGATATCA
GTGGAACTGTTAAAAGAGATGGCGCGAGAGGGAATTTCCCCCGACGTCAC
GAGCTACTCGGCCGCCATTGGTGGATGTGCAAACGCTAAGATGTTTCGGC
GAGCGATACGCCTTCTTCGCGAGATGCCAACCAAAGGGATCAATCCTGGT
GTCGTCGCTTACAACAATGCGGTGAGATCTTGCCGCAACAGCCAACAGTG
GGAACTCGCTGTGGATCTTCTCAGGGAGATGATTGCAATCGGGGTGGAGC
CGAACACAATCACGTTCTCGATGGCGATCGCAGCCTGCGCGAACAACCGC
CGCCTCGGCGATGCGCTTGACTTGTTGGCGGAGATGAGAGGGCTGGGCAT
GAACCCTGACTCGAATTGTTGGAAAGCGGTCATGCGTGCCTTGGGTGGCG
GG
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Coding sequence (CDS) from alignment at F-serratus_M_contig9:124089..124940+

>mRNA_F-serratus_M_contig9.20341.1 ID=mRNA_F-serratus_M_contig9.20341.1|Name=mRNA_F-serratus_M_contig9.20341.1|organism=Fucus serratus male|type=CDS|length=1704bp|location=Sequence derived from alignment at F-serratus_M_contig9:124089..124940+ (Fucus serratus male)
GGTTACAACGACGATTGGGTTTCAACCACTCGCGCAGGCGTCTTCGACGA
GGTCACGGCACAGAAAGGAGGGGAGGAGGCATGGACAAAGGCCTATCATG
ACCGGCAGAAGACTGGAACGGCGGTTGAAGCGGGTCTCGCTAGAGCACGG
ACATCGGACCTGGGCAGGTCACAAGAAGAGAGCGTGAAGATCTACGCGAA
CTTGCGCGCGTCGGCTCAGAACGGAACGTGGCAGACTGCGCTCGGCATCA
TCACGCACATGAAGAACAACGGGTTGACGCCCAACGTTCGGATGGTAACC
ATGGCAATAACCGCCTGTTCGAAGGGCCGTAGGTGGGAGGAGGCTCTAAT
GTTGCTGAGGGACATGCCTCGGATGGGGACCGAGCCCAACGTCGTGACGT
ACAATGCCTGCATACATGCGTGCGCGAGGGGGGGGCAGTGGGAGATATCA
GTGGAACTGTTAAAAGAGATGGCGCGAGAGGGAATTTCCCCCGACGTCAC
GAGCTACTCGGCCGCCATTGGTGGATGTGCAAACGCTAAGATGTTTCGGC
GAGCGATACGCCTTCTTCGCGAGATGCCAACCAAAGGGATCAATCCTGGT
GTCGTCGCTTACAACAATGCGGTGAGATCTTGCCGCAACAGCCAACAGTG
GGAACTCGCTGTGGATCTTCTCAGGGAGATGATTGCAATCGGGGTGGAGC
CGAACACAATCACGTTCTCGATGGCGATCGCAGCCTGCGCGAACAACCGC
CGCCTCGGCGATGCGCTTGACTTGTTGGCGGAGATGAGAGGGCTGGGCAT
GAACCCTGACTCGAATTGTTGGAAAGCGGTCATGCGTGCCTTGGGTGGCG
GGGGTTACAACGACGATTGGGTTTCAACCACTCGCGCAGGCGTCTTCGAC
GAGGTCACGGCACAGAAAGGAGGGGAGGAGGCATGGACAAAGGCCTATCA
TGACCGGCAGAAGACTGGAACGGCGGTTGAAGCGGGTCTCGCTAGAGCAC
GGACATCGGACCTGGGCAGGTCACAAGAAGAGAGCGTGAAGATCTACGCG
AACTTGCGCGCGTCGGCTCAGAACGGAACGTGGCAGACTGCGCTCGGCAT
CATCACGCACATGAAGAACAACGGGTTGACGCCCAACGTTCGGATGGTAA
CCATGGCAATAACCGCCTGTTCGAAGGGCCGTAGGTGGGAGGAGGCTCTA
ATGTTGCTGAGGGACATGCCTCGGATGGGGACCGAGCCCAACGTCGTGAC
GTACAATGCCTGCATACATGCGTGCGCGAGGGGGGGGCAGTGGGAGATAT
CAGTGGAACTGTTAAAAGAGATGGCGCGAGAGGGAATTTCCCCCGACGTC
ACGAGCTACTCGGCCGCCATTGGTGGATGTGCAAACGCTAAGATGTTTCG
GCGAGCGATACGCCTTCTTCGCGAGATGCCAACCAAAGGGATCAATCCTG
GTGTCGTCGCTTACAACAATGCGGTGAGATCTTGCCGCAACAGCCAACAG
TGGGAACTCGCTGTGGATCTTCTCAGGGAGATGATTGCAATCGGGGTGGA
GCCGAACACAATCACGTTCTCGATGGCGATCGCAGCCTGCGCGAACAACC
GCCGCCTCGGCGATGCGCTTGACTTGTTGGCGGAGATGAGAGGGCTGGGC
ATGAACCCTGACTCGAATTGTTGGAAAGCGGTCATGCGTGCCTTGGGTGG
CGGG
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